Coexpression cluster: Cluster_320 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0098739 import across plasma membrane 6.76% (5/74) 7.55 0.0 0.0
GO:0099587 inorganic ion import across plasma membrane 6.76% (5/74) 7.56 0.0 0.0
GO:0098659 inorganic cation import across plasma membrane 6.76% (5/74) 7.56 0.0 0.0
GO:0015081 sodium ion transmembrane transporter activity 6.76% (5/74) 7.7 0.0 0.0
GO:0006814 sodium ion transport 6.76% (5/74) 7.59 0.0 0.0
GO:0035725 sodium ion transmembrane transport 6.76% (5/74) 7.71 0.0 0.0
GO:0015386 potassium:proton antiporter activity 6.76% (5/74) 7.3 0.0 0.0
GO:0022821 solute:potassium antiporter activity 6.76% (5/74) 7.3 0.0 0.0
GO:0015385 sodium:proton antiporter activity 6.76% (5/74) 7.72 0.0 0.0
GO:0098719 sodium ion import across plasma membrane 6.76% (5/74) 7.72 0.0 0.0
GO:0006109 regulation of carbohydrate metabolic process 5.41% (4/74) 8.26 0.0 0.0
GO:0051139 metal cation:proton antiporter activity 6.76% (5/74) 6.71 0.0 0.0
GO:0140828 metal cation:monoatomic cation antiporter activity 6.76% (5/74) 6.71 0.0 0.0
GO:0051453 regulation of intracellular pH 6.76% (5/74) 6.44 0.0 0.0
GO:0030641 regulation of cellular pH 6.76% (5/74) 6.44 0.0 0.0
GO:2000904 regulation of starch metabolic process 4.05% (3/74) 9.87 0.0 0.0
GO:0045165 cell fate commitment 4.05% (3/74) 9.62 0.0 0.0
GO:0016109 tetraterpenoid biosynthetic process 5.41% (4/74) 7.46 0.0 0.0
GO:0016117 carotenoid biosynthetic process 5.41% (4/74) 7.46 0.0 0.0
GO:0006885 regulation of pH 6.76% (5/74) 6.12 0.0 0.0
GO:0043036 starch grain 4.05% (3/74) 9.21 0.0 0.0
GO:0016767 geranylgeranyl-diphosphate geranylgeranyltransferase activity 4.05% (3/74) 9.11 0.0 0.0
GO:0016116 carotenoid metabolic process 5.41% (4/74) 6.9 0.0 1e-06
GO:0016108 tetraterpenoid metabolic process 5.41% (4/74) 6.9 0.0 1e-06
GO:0004337 geranyltranstransferase activity 4.05% (3/74) 8.82 0.0 1e-06
GO:0032881 regulation of polysaccharide metabolic process 4.05% (3/74) 8.74 0.0 1e-06
GO:0071805 potassium ion transmembrane transport 6.76% (5/74) 5.6 0.0 1e-06
GO:1902600 proton transmembrane transport 6.76% (5/74) 5.52 0.0 1e-06
GO:0098657 import into cell 6.76% (5/74) 5.43 0.0 1e-06
GO:0015079 potassium ion transmembrane transporter activity 6.76% (5/74) 5.35 0.0 2e-06
GO:0010158 abaxial cell fate specification 4.05% (3/74) 8.13 0.0 2e-06
GO:0006813 potassium ion transport 6.76% (5/74) 5.31 0.0 2e-06
GO:0046148 pigment biosynthetic process 5.41% (4/74) 6.34 0.0 2e-06
GO:0030003 intracellular monoatomic cation homeostasis 6.76% (5/74) 5.14 0.0 3e-06
GO:0005982 starch metabolic process 4.05% (3/74) 7.75 0.0 3e-06
GO:0015078 proton transmembrane transporter activity 6.76% (5/74) 5.02 1e-06 4e-06
GO:0042440 pigment metabolic process 5.41% (4/74) 6.0 1e-06 4e-06
GO:0006873 intracellular monoatomic ion homeostasis 6.76% (5/74) 5.03 1e-06 4e-06
GO:0001708 cell fate specification 4.05% (3/74) 7.57 1e-06 4e-06
GO:0032501 multicellular organismal process 6.76% (5/74) 4.97 1e-06 5e-06
GO:0030001 metal ion transport 8.11% (6/74) 4.3 1e-06 5e-06
GO:0046873 metal ion transmembrane transporter activity 8.11% (6/74) 4.28 1e-06 5e-06
GO:0055080 monoatomic cation homeostasis 6.76% (5/74) 4.89 1e-06 6e-06
GO:0055082 intracellular chemical homeostasis 6.76% (5/74) 4.86 1e-06 6e-06
GO:0050801 monoatomic ion homeostasis 6.76% (5/74) 4.75 1e-06 8e-06
GO:2001070 starch binding 4.05% (3/74) 7.15 1e-06 9e-06
GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity 4.05% (3/74) 7.11 2e-06 9e-06
GO:0022853 active monoatomic ion transmembrane transporter activity 6.76% (5/74) 4.7 2e-06 1e-05
GO:0019725 cellular homeostasis 6.76% (5/74) 4.65 2e-06 1.1e-05
GO:0015297 antiporter activity 6.76% (5/74) 4.65 2e-06 1.1e-05
GO:0032968 positive regulation of transcription elongation by RNA polymerase II 4.05% (3/74) 6.81 3e-06 1.6e-05
GO:0034243 regulation of transcription elongation by RNA polymerase II 4.05% (3/74) 6.76 3e-06 1.8e-05
GO:0065007 biological regulation 21.62% (16/74) 1.93 3e-06 1.8e-05
GO:0006812 monoatomic cation transport 8.11% (6/74) 3.88 4e-06 1.9e-05
GO:0022890 inorganic cation transmembrane transporter activity 8.11% (6/74) 3.82 5e-06 2.4e-05
GO:0070816 obsolete phosphorylation of RNA polymerase II C-terminal domain 4.05% (3/74) 6.56 5e-06 2.5e-05
GO:0048878 chemical homeostasis 6.76% (5/74) 4.31 6e-06 3e-05
GO:0015291 secondary active transmembrane transporter activity 6.76% (5/74) 4.29 6e-06 3.1e-05
GO:0140994 RNA polymerase II CTD heptapeptide repeat modifying activity 4.05% (3/74) 6.39 7e-06 3.4e-05
GO:0006811 monoatomic ion transport 8.11% (6/74) 3.68 8e-06 3.8e-05
GO:0008324 monoatomic cation transmembrane transporter activity 8.11% (6/74) 3.68 8e-06 3.8e-05
GO:0004659 prenyltransferase activity 4.05% (3/74) 6.26 9e-06 4e-05
GO:0016114 terpenoid biosynthetic process 5.41% (4/74) 4.97 9e-06 4e-05
GO:0042592 homeostatic process 6.76% (5/74) 4.18 9e-06 4e-05
GO:0098655 monoatomic cation transmembrane transport 6.76% (5/74) 4.19 9e-06 4.1e-05
GO:0098662 inorganic cation transmembrane transport 6.76% (5/74) 4.13 1.1e-05 4.6e-05
GO:0034220 monoatomic ion transmembrane transport 6.76% (5/74) 4.12 1.1e-05 4.7e-05
GO:0032786 positive regulation of DNA-templated transcription, elongation 4.05% (3/74) 6.14 1.2e-05 4.8e-05
GO:0065008 regulation of biological quality 6.76% (5/74) 4.08 1.3e-05 5.2e-05
GO:0098660 inorganic ion transmembrane transport 6.76% (5/74) 4.03 1.5e-05 6.1e-05
GO:0015318 inorganic molecular entity transmembrane transporter activity 8.11% (6/74) 3.52 1.6e-05 6.1e-05
GO:0006721 terpenoid metabolic process 5.41% (4/74) 4.74 1.7e-05 6.5e-05
GO:0007275 multicellular organism development 4.05% (3/74) 5.97 1.7e-05 6.6e-05
GO:0048869 cellular developmental process 4.05% (3/74) 5.91 1.9e-05 7.2e-05
GO:0008299 isoprenoid biosynthetic process 5.41% (4/74) 4.65 2.2e-05 7.9e-05
GO:0032784 regulation of DNA-templated transcription elongation 4.05% (3/74) 5.85 2.1e-05 8e-05
GO:0015075 monoatomic ion transmembrane transporter activity 8.11% (6/74) 3.39 2.5e-05 9e-05
GO:1901702 salt transmembrane transporter activity 6.76% (5/74) 3.85 2.7e-05 9.8e-05
GO:0110165 cellular anatomical entity 37.84% (28/74) 1.1 3.2e-05 0.000113
GO:0004311 farnesyltranstransferase activity 2.7% (2/74) 7.94 3.2e-05 0.000113
GO:0000307 cyclin-dependent protein kinase holoenzyme complex 4.05% (3/74) 5.51 4.3e-05 0.000148
GO:0006720 isoprenoid metabolic process 5.41% (4/74) 4.2 7.3e-05 0.000245
GO:0022804 active transmembrane transporter activity 8.11% (6/74) 3.11 7.3e-05 0.000247
GO:0005634 nucleus 14.86% (11/74) 2.01 8.6e-05 0.000284
GO:0009640 photomorphogenesis 2.7% (2/74) 7.21 8.9e-05 0.000292
GO:0005575 cellular_component 39.19% (29/74) 0.97 0.000114 0.00037
GO:0006357 regulation of transcription by RNA polymerase II 6.76% (5/74) 3.35 0.000141 0.000446
GO:1902554 serine/threonine protein kinase complex 4.05% (3/74) 4.94 0.000139 0.000447
GO:1902911 protein kinase complex 4.05% (3/74) 4.91 0.000148 0.000465
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors 4.05% (3/74) 4.86 0.000164 0.000508
GO:0043231 intracellular membrane-bounded organelle 20.27% (15/74) 1.53 0.000167 0.000513
GO:0043227 membrane-bounded organelle 20.27% (15/74) 1.52 0.000182 0.000551
GO:0009639 response to red or far red light 2.7% (2/74) 6.36 0.000287 0.000862
GO:0080090 regulation of primary metabolic process 12.16% (9/74) 2.06 0.000307 0.000912
GO:0030247 polysaccharide binding 4.05% (3/74) 4.53 0.000317 0.000931
GO:0045944 positive regulation of transcription by RNA polymerase II 4.05% (3/74) 4.48 0.000355 0.001032
GO:0009532 plastid stroma 4.05% (3/74) 4.44 0.000383 0.001091
GO:0009570 chloroplast stroma 4.05% (3/74) 4.44 0.000383 0.001091
GO:0016719 9,9'-di-cis-zeta-carotene desaturase activity 1.35% (1/74) 10.99 0.000492 0.001374
GO:0016635 oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor 1.35% (1/74) 10.99 0.000492 0.001374
GO:0043226 organelle 20.27% (15/74) 1.31 0.000828 0.002243
GO:0043229 intracellular organelle 20.27% (15/74) 1.31 0.000827 0.002263
GO:0048856 anatomical structure development 4.05% (3/74) 4.06 0.000822 0.002271
GO:0009791 post-embryonic development 2.7% (2/74) 5.44 0.001013 0.002717
GO:0019222 regulation of metabolic process 12.16% (9/74) 1.78 0.001187 0.003153
GO:0044042 glucan metabolic process 4.05% (3/74) 3.78 0.001422 0.003742
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups 4.05% (3/74) 3.76 0.001489 0.003882
GO:0006629 lipid metabolic process 8.11% (6/74) 2.26 0.001628 0.004207
GO:0045893 positive regulation of DNA-templated transcription 4.05% (3/74) 3.69 0.001689 0.004246
GO:1902680 positive regulation of RNA biosynthetic process 4.05% (3/74) 3.69 0.001689 0.004246
GO:0006810 transport 12.16% (9/74) 1.71 0.001666 0.004265
GO:0050789 regulation of biological process 14.86% (11/74) 1.49 0.001738 0.00433
GO:0051234 establishment of localization 12.16% (9/74) 1.65 0.002256 0.005571
GO:0032502 developmental process 4.05% (3/74) 3.45 0.002732 0.006629
GO:0061695 transferase complex, transferring phosphorus-containing groups 4.05% (3/74) 3.45 0.002715 0.006645
GO:0051254 positive regulation of RNA metabolic process 4.05% (3/74) 3.44 0.002774 0.006671
GO:0051179 localization 12.16% (9/74) 1.59 0.002883 0.006876
GO:0031328 positive regulation of cellular biosynthetic process 4.05% (3/74) 3.4 0.002993 0.00696
GO:0010557 positive regulation of macromolecule biosynthetic process 4.05% (3/74) 3.4 0.002993 0.00696
GO:0009891 positive regulation of biosynthetic process 4.05% (3/74) 3.4 0.002993 0.00696
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 4.05% (3/74) 3.36 0.003235 0.00746
GO:0004740 pyruvate dehydrogenase (acetyl-transferring) kinase activity 1.35% (1/74) 8.23 0.00332 0.007592
GO:0005886 plasma membrane 8.11% (6/74) 2.04 0.00343 0.00778
GO:0022857 transmembrane transporter activity 9.46% (7/74) 1.83 0.003575 0.008044
GO:0008610 lipid biosynthetic process 5.41% (4/74) 2.68 0.003669 0.00806
GO:0005976 polysaccharide metabolic process 4.05% (3/74) 3.3 0.003667 0.008119
GO:0060255 regulation of macromolecule metabolic process 10.81% (8/74) 1.67 0.003662 0.008174
GO:0055085 transmembrane transport 8.11% (6/74) 2.0 0.003979 0.008674
GO:0010906 regulation of glucose metabolic process 1.35% (1/74) 7.86 0.004301 0.009302
GO:0005215 transporter activity 9.46% (7/74) 1.76 0.00463 0.009937
GO:0043335 protein unfolding 1.35% (1/74) 7.7 0.004791 0.010205
GO:0009416 response to light stimulus 2.7% (2/74) 4.2 0.005466 0.011467
GO:0031325 positive regulation of cellular metabolic process 4.05% (3/74) 3.09 0.00545 0.011518
GO:0030246 carbohydrate binding 4.05% (3/74) 3.07 0.005683 0.011832
GO:0008150 biological_process 41.89% (31/74) 0.59 0.006391 0.013111
GO:0009314 response to radiation 2.7% (2/74) 4.08 0.006355 0.013134
GO:0048522 positive regulation of cellular process 4.05% (3/74) 2.91 0.007611 0.015499
GO:0051173 positive regulation of nitrogen compound metabolic process 4.05% (3/74) 2.89 0.007947 0.016067
GO:0009893 positive regulation of metabolic process 4.05% (3/74) 2.87 0.008253 0.016446
GO:0051083 'de novo' cotranslational protein folding 1.35% (1/74) 6.9 0.00834 0.016502
GO:0010604 positive regulation of macromolecule metabolic process 4.05% (3/74) 2.87 0.008239 0.016538
GO:0005524 ATP binding 12.16% (9/74) 1.3 0.010492 0.020614
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 2.7% (2/74) 3.63 0.011594 0.02262
GO:0048518 positive regulation of biological process 4.05% (3/74) 2.65 0.012388 0.024002
GO:0000987 cis-regulatory region sequence-specific DNA binding 2.7% (2/74) 3.54 0.013058 0.024952
GO:0016020 membrane 13.51% (10/74) 1.17 0.013047 0.025105
GO:0004674 protein serine/threonine kinase activity 5.41% (4/74) 2.13 0.013642 0.025891
GO:0044255 cellular lipid metabolic process 5.41% (4/74) 2.09 0.014753 0.027811
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific 2.7% (2/74) 3.4 0.015691 0.029381
GO:0035639 purine ribonucleoside triphosphate binding 12.16% (9/74) 1.2 0.016016 0.029789
GO:0042752 regulation of circadian rhythm 1.35% (1/74) 5.93 0.016247 0.03002
GO:0005739 mitochondrion 4.05% (3/74) 2.47 0.017387 0.031913
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 2.7% (2/74) 3.31 0.017595 0.032086
GO:0016887 ATP hydrolysis activity 4.05% (3/74) 2.42 0.01904 0.034494
GO:0009628 response to abiotic stimulus 2.7% (2/74) 3.14 0.022034 0.039661
GO:0003674 molecular_function 47.3% (35/74) 0.42 0.022822 0.040816
GO:0009987 cellular process 28.38% (21/74) 0.62 0.023935 0.042535
GO:0006468 protein phosphorylation 8.11% (6/74) 1.4 0.026272 0.046392
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (74) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms