Coexpression cluster: Cluster_6432 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0070990 snRNP binding 33.33% (1/3) 12.12 0.000225 0.010333
GO:1990446 U1 snRNP binding 33.33% (1/3) 12.12 0.000225 0.010333
GO:1903313 positive regulation of mRNA metabolic process 33.33% (1/3) 9.14 0.001776 0.012256
GO:0043226 organelle 100.0% (3/3) 3.62 0.000542 0.012476
GO:0043487 regulation of RNA stability 33.33% (1/3) 9.25 0.001647 0.012623
GO:0016070 RNA metabolic process 66.67% (2/3) 4.78 0.001738 0.012623
GO:0030135 coated vesicle 33.33% (1/3) 9.28 0.001612 0.013083
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 33.33% (1/3) 11.33 0.000389 0.013432
GO:0007030 Golgi organization 33.33% (1/3) 9.32 0.001562 0.01347
GO:0016071 mRNA metabolic process 66.67% (2/3) 6.85 0.0001 0.013739
GO:0061013 regulation of mRNA catabolic process 33.33% (1/3) 9.36 0.001517 0.013955
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment 33.33% (1/3) 10.25 0.000819 0.014119
GO:0061014 positive regulation of mRNA catabolic process 33.33% (1/3) 9.55 0.001337 0.014196
GO:0031331 positive regulation of cellular catabolic process 33.33% (1/3) 9.55 0.001337 0.014196
GO:0034249 negative regulation of amide metabolic process 33.33% (1/3) 8.77 0.002285 0.014331
GO:0017148 negative regulation of translation 33.33% (1/3) 8.77 0.002285 0.014331
GO:0043488 regulation of mRNA stability 33.33% (1/3) 9.4 0.001482 0.014608
GO:0043229 intracellular organelle 100.0% (3/3) 3.62 0.000542 0.014966
GO:0030134 COPII-coated ER to Golgi transport vesicle 33.33% (1/3) 10.32 0.000784 0.015448
GO:0051248 negative regulation of protein metabolic process 33.33% (1/3) 8.31 0.003137 0.01546
GO:0031329 regulation of cellular catabolic process 33.33% (1/3) 8.33 0.003107 0.01588
GO:1903311 regulation of mRNA metabolic process 33.33% (1/3) 8.5 0.002768 0.015917
GO:0000932 P-body 33.33% (1/3) 8.54 0.002678 0.016071
GO:0035770 ribonucleoprotein granule 33.33% (1/3) 8.36 0.003047 0.016174
GO:0030015 CCR4-NOT core complex 33.33% (1/3) 9.88 0.001058 0.016223
GO:0050779 RNA destabilization 33.33% (1/3) 9.58 0.001302 0.016339
GO:0061157 mRNA destabilization 33.33% (1/3) 9.58 0.001302 0.016339
GO:0009896 positive regulation of catabolic process 33.33% (1/3) 8.16 0.003481 0.016563
GO:0036464 cytoplasmic ribonucleoprotein granule 33.33% (1/3) 8.38 0.003002 0.016573
GO:0034248 regulation of amide metabolic process 33.33% (1/3) 7.79 0.004496 0.018249
GO:0006417 regulation of translation 33.33% (1/3) 7.79 0.004496 0.018249
GO:0090304 nucleic acid metabolic process 66.67% (2/3) 4.06 0.004664 0.018391
GO:0000956 nuclear-transcribed mRNA catabolic process 33.33% (1/3) 7.83 0.004402 0.018982
GO:0060090 molecular adaptor activity 33.33% (1/3) 7.83 0.004377 0.019484
GO:0043021 ribonucleoprotein complex binding 33.33% (1/3) 7.87 0.004257 0.019584
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 33.33% (1/3) 7.59 0.005168 0.019811
GO:0110165 cellular anatomical entity 100.0% (3/3) 2.5 0.005519 0.020044
GO:0006402 mRNA catabolic process 33.33% (1/3) 7.51 0.005467 0.020389
GO:0009894 regulation of catabolic process 33.33% (1/3) 7.43 0.00577 0.020417
GO:0006401 RNA catabolic process 33.33% (1/3) 7.27 0.006471 0.021262
GO:0009987 cellular process 100.0% (3/3) 2.44 0.006253 0.021571
GO:0006139 nucleobase-containing compound metabolic process 66.67% (2/3) 3.83 0.006416 0.021594
GO:0046483 heterocycle metabolic process 66.67% (2/3) 3.73 0.007347 0.023577
GO:0034641 cellular nitrogen compound metabolic process 66.67% (2/3) 3.64 0.008265 0.023761
GO:1901360 organic cyclic compound metabolic process 66.67% (2/3) 3.65 0.008135 0.023885
GO:0051172 negative regulation of nitrogen compound metabolic process 33.33% (1/3) 6.96 0.008026 0.024078
GO:0006725 cellular aromatic compound metabolic process 66.67% (2/3) 3.69 0.007686 0.024105
GO:0005575 cellular_component 100.0% (3/3) 2.32 0.00799 0.024504
GO:0010608 post-transcriptional regulation of gene expression 33.33% (1/3) 6.83 0.008756 0.024659
GO:0031410 cytoplasmic vesicle 33.33% (1/3) 6.65 0.009927 0.026343
GO:0097708 intracellular vesicle 33.33% (1/3) 6.65 0.009927 0.026343
GO:0099080 supramolecular complex 33.33% (1/3) 6.62 0.01012 0.02635
GO:0048193 Golgi vesicle transport 33.33% (1/3) 6.7 0.00956 0.026384
GO:0006397 mRNA processing 33.33% (1/3) 6.55 0.010606 0.027104
GO:0051254 positive regulation of RNA metabolic process 33.33% (1/3) 6.48 0.011171 0.027528
GO:0051246 regulation of protein metabolic process 33.33% (1/3) 6.5 0.011022 0.027655
GO:0034655 nucleobase-containing compound catabolic process 33.33% (1/3) 6.37 0.012043 0.027698
GO:0010629 negative regulation of gene expression 33.33% (1/3) 6.34 0.012275 0.02777
GO:0065008 regulation of biological quality 33.33% (1/3) 6.39 0.011899 0.027831
GO:0005794 Golgi apparatus 33.33% (1/3) 6.31 0.012567 0.027973
GO:0031982 vesicle 33.33% (1/3) 6.39 0.011879 0.028264
GO:0046700 heterocycle catabolic process 33.33% (1/3) 6.25 0.013127 0.028304
GO:0044270 cellular nitrogen compound catabolic process 33.33% (1/3) 6.25 0.013127 0.028304
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 33.33% (1/3) 6.4 0.0118 0.028568
GO:0043227 membrane-bounded organelle 66.67% (2/3) 3.24 0.014275 0.028969
GO:0009893 positive regulation of metabolic process 33.33% (1/3) 5.91 0.016552 0.029284
GO:0031325 positive regulation of cellular metabolic process 33.33% (1/3) 6.13 0.01423 0.029309
GO:0005783 endoplasmic reticulum 33.33% (1/3) 6.17 0.013824 0.02935
GO:0043231 intracellular membrane-bounded organelle 66.67% (2/3) 3.25 0.014067 0.029413
GO:0019439 aromatic compound catabolic process 33.33% (1/3) 6.07 0.014764 0.029528
GO:1901361 organic cyclic compound catabolic process 33.33% (1/3) 6.05 0.015021 0.029612
GO:0051173 positive regulation of nitrogen compound metabolic process 33.33% (1/3) 5.93 0.016325 0.029643
GO:0010604 positive regulation of macromolecule metabolic process 33.33% (1/3) 5.91 0.016542 0.029647
GO:0009890 negative regulation of biosynthetic process 33.33% (1/3) 5.93 0.01631 0.030011
GO:0031327 negative regulation of cellular biosynthetic process 33.33% (1/3) 5.94 0.016241 0.030287
GO:0048522 positive regulation of cellular process 33.33% (1/3) 5.95 0.016068 0.030375
GO:0006886 intracellular protein transport 33.33% (1/3) 5.96 0.016004 0.030674
GO:0010558 negative regulation of macromolecule biosynthetic process 33.33% (1/3) 5.98 0.015787 0.030684
GO:0009892 negative regulation of metabolic process 33.33% (1/3) 5.77 0.01817 0.030957
GO:0010605 negative regulation of macromolecule metabolic process 33.33% (1/3) 5.8 0.017786 0.031069
GO:0031324 negative regulation of cellular metabolic process 33.33% (1/3) 5.78 0.018072 0.031174
GO:0048518 positive regulation of biological process 33.33% (1/3) 5.69 0.019235 0.032372
GO:0015031 protein transport 33.33% (1/3) 5.62 0.020147 0.033497
GO:0008150 biological_process 100.0% (3/3) 1.85 0.021524 0.035362
GO:0044877 protein-containing complex binding 33.33% (1/3) 5.51 0.02183 0.035442
GO:0048523 negative regulation of cellular process 33.33% (1/3) 5.4 0.023477 0.037673
GO:0048519 negative regulation of biological process 33.33% (1/3) 5.38 0.023895 0.037902
GO:0016192 vesicle-mediated transport 33.33% (1/3) 5.35 0.024371 0.038219
GO:0045184 establishment of protein localization 33.33% (1/3) 5.32 0.024892 0.038596
GO:0033036 macromolecule localization 33.33% (1/3) 5.15 0.027839 0.04044
GO:0009057 macromolecule catabolic process 33.33% (1/3) 5.2 0.026874 0.040753
GO:0070727 cellular macromolecule localization 33.33% (1/3) 5.16 0.027785 0.040791
GO:0140535 intracellular protein-containing complex 33.33% (1/3) 5.22 0.026628 0.04083
GO:0051649 establishment of localization in cell 33.33% (1/3) 5.12 0.028574 0.041075
GO:0008104 protein localization 33.33% (1/3) 5.16 0.027721 0.041135
GO:0046907 intracellular transport 33.33% (1/3) 5.16 0.027628 0.041443
GO:0044248 cellular catabolic process 33.33% (1/3) 5.03 0.030336 0.043158
GO:0043170 macromolecule metabolic process 66.67% (2/3) 2.61 0.032981 0.046443
GO:0071705 nitrogen compound transport 33.33% (1/3) 4.89 0.033365 0.046508
GO:0006396 RNA processing 33.33% (1/3) 4.79 0.035701 0.049267
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (3) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms