Coexpression cluster: Cluster_2084 (Co-expression clusters of Hoang et al 2017 (PRJNA356226))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0022625 cytosolic large ribosomal subunit 13.92% (11/79) 7.01 0.0 0.0
GO:0015934 large ribosomal subunit 13.92% (11/79) 6.72 0.0 0.0
GO:1990904 ribonucleoprotein complex 21.52% (17/79) 4.65 0.0 0.0
GO:0044391 ribosomal subunit 13.92% (11/79) 5.99 0.0 0.0
GO:0006412 translation 15.19% (12/79) 5.53 0.0 0.0
GO:0043043 peptide biosynthetic process 15.19% (12/79) 5.41 0.0 0.0
GO:0005840 ribosome 13.92% (11/79) 5.81 0.0 0.0
GO:0003735 structural constituent of ribosome 13.92% (11/79) 5.59 0.0 0.0
GO:0006518 peptide metabolic process 15.19% (12/79) 5.15 0.0 0.0
GO:0043604 amide biosynthetic process 15.19% (12/79) 5.02 0.0 0.0
GO:0043603 amide metabolic process 15.19% (12/79) 4.59 0.0 0.0
GO:0005198 structural molecule activity 13.92% (11/79) 4.87 0.0 0.0
GO:0009059 macromolecule biosynthetic process 17.72% (14/79) 3.81 0.0 0.0
GO:0003723 RNA binding 21.52% (17/79) 3.29 0.0 0.0
GO:0032991 protein-containing complex 27.85% (22/79) 2.59 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 16.46% (13/79) 3.73 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 15.19% (12/79) 3.32 0.0 0.0
GO:0003676 nucleic acid binding 27.85% (22/79) 2.08 0.0 0.0
GO:0043228 non-membrane-bounded organelle 13.92% (11/79) 3.48 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 13.92% (11/79) 3.48 0.0 0.0
GO:0044249 cellular biosynthetic process 18.99% (15/79) 2.66 0.0 0.0
GO:1901576 organic substance biosynthetic process 18.99% (15/79) 2.53 0.0 1e-06
GO:0005575 cellular_component 46.84% (37/79) 1.23 0.0 1e-06
GO:0009058 biosynthetic process 18.99% (15/79) 2.46 0.0 1e-06
GO:0019538 protein metabolic process 24.05% (19/79) 1.89 1e-06 1e-05
GO:0005488 binding 46.84% (37/79) 1.05 2e-06 3.1e-05
GO:0043170 macromolecule metabolic process 30.38% (24/79) 1.48 2e-06 3.5e-05
GO:0097159 organic cyclic compound binding 35.44% (28/79) 1.3 2e-06 4e-05
GO:1901564 organonitrogen compound metabolic process 25.32% (20/79) 1.61 5e-06 8e-05
GO:0043226 organelle 24.05% (19/79) 1.56 1.5e-05 0.000222
GO:0043229 intracellular organelle 24.05% (19/79) 1.56 1.5e-05 0.000229
GO:0034641 cellular nitrogen compound metabolic process 18.99% (15/79) 1.83 1.7e-05 0.000244
GO:0006807 nitrogen compound metabolic process 29.11% (23/79) 1.27 4e-05 0.00055
GO:0110165 cellular anatomical entity 36.71% (29/79) 1.05 4.5e-05 0.000609
GO:0071704 organic substance metabolic process 32.91% (26/79) 1.11 7.5e-05 0.000974
GO:0044237 cellular metabolic process 27.85% (22/79) 1.25 7.8e-05 0.000996
GO:0008152 metabolic process 32.91% (26/79) 1.04 0.000167 0.002068
GO:0003674 molecular_function 55.7% (44/79) 0.66 0.000175 0.00211
GO:0044238 primary metabolic process 30.38% (24/79) 1.08 0.000214 0.00251
GO:0008150 biological_process 46.84% (37/79) 0.75 0.000245 0.002802
GO:0009987 cellular process 35.44% (28/79) 0.94 0.000256 0.002849
GO:0005948 acetolactate synthase complex 1.27% (1/79) 10.89 0.000526 0.005721
GO:0002181 cytoplasmic translation 2.53% (2/79) 5.85 0.000575 0.00611
GO:2000637 positive regulation of miRNA-mediated gene silencing 1.27% (1/79) 10.31 0.000789 0.006552
GO:2000636 positive regulation of primary miRNA processing 1.27% (1/79) 10.31 0.000789 0.006552
GO:2000634 regulation of primary miRNA processing 1.27% (1/79) 10.31 0.000789 0.006552
GO:2000628 regulation of miRNA metabolic process 1.27% (1/79) 10.31 0.000789 0.006552
GO:1903800 positive regulation of miRNA processing 1.27% (1/79) 10.31 0.000789 0.006552
GO:1903798 regulation of miRNA processing 1.27% (1/79) 10.31 0.000789 0.006552
GO:1900370 positive regulation of post-transcriptional gene silencing by RNA 1.27% (1/79) 10.31 0.000789 0.006552
GO:0060148 positive regulation of post-transcriptional gene silencing 1.27% (1/79) 10.31 0.000789 0.006552
GO:0060964 regulation of miRNA-mediated gene silencing 1.27% (1/79) 10.31 0.000789 0.006552
GO:2000630 positive regulation of miRNA metabolic process 1.27% (1/79) 10.31 0.000789 0.006552
GO:1900368 regulation of post-transcriptional gene silencing by regulatory ncRNA 1.27% (1/79) 10.31 0.000789 0.006552
GO:0042273 ribosomal large subunit biogenesis 2.53% (2/79) 5.71 0.000698 0.007247
GO:1901681 sulfur compound binding 2.53% (2/79) 5.51 0.000928 0.007311
GO:0070920 regulation of regulatory ncRNA processing 1.27% (1/79) 10.09 0.00092 0.007375
GO:0060966 regulation of gene silencing by regulatory ncRNA 1.27% (1/79) 10.09 0.00092 0.007375
GO:0005681 spliceosomal complex 3.8% (3/79) 3.92 0.001078 0.008209
GO:0003729 mRNA binding 5.06% (4/79) 3.17 0.001077 0.008341
GO:0006414 translational elongation 2.53% (2/79) 5.33 0.001177 0.008821
GO:0050794 regulation of cellular process 13.92% (11/79) 1.47 0.002018 0.014872
GO:0018283 iron incorporation into metallo-sulfur cluster 1.27% (1/79) 8.81 0.002233 0.015004
GO:0005080 protein kinase C binding 1.27% (1/79) 8.81 0.002233 0.015004
GO:0004322 ferroxidase activity 1.27% (1/79) 8.81 0.002233 0.015004
GO:0016724 oxidoreductase activity, acting on metal ions, oxygen as acceptor 1.27% (1/79) 8.81 0.002233 0.015004
GO:0034986 iron chaperone activity 1.27% (1/79) 8.81 0.002233 0.015004
GO:0018282 metal incorporation into metallo-sulfur cluster 1.27% (1/79) 8.81 0.002233 0.015004
GO:0071013 catalytic step 2 spliceosome 2.53% (2/79) 4.85 0.00227 0.015034
GO:0030532 small nuclear ribonucleoprotein complex 2.53% (2/79) 4.76 0.002565 0.016507
GO:0097525 spliceosomal snRNP complex 2.53% (2/79) 4.76 0.002556 0.016685
GO:0046872 metal ion binding 10.13% (8/79) 1.73 0.002881 0.018284
GO:0050789 regulation of biological process 13.92% (11/79) 1.39 0.002952 0.018481
GO:0004449 isocitrate dehydrogenase (NAD+) activity 1.27% (1/79) 8.37 0.003019 0.018646
GO:0120114 Sm-like protein family complex 2.53% (2/79) 4.62 0.003077 0.01875
GO:0043022 ribosome binding 2.53% (2/79) 4.54 0.003467 0.020315
GO:0022613 ribonucleoprotein complex biogenesis 2.53% (2/79) 4.54 0.003426 0.020336
GO:0043169 cation binding 10.13% (8/79) 1.69 0.003383 0.02034
GO:0016722 oxidoreductase activity, acting on metal ions 1.27% (1/79) 8.04 0.003805 0.022014
GO:0003984 acetolactate synthase activity 1.27% (1/79) 7.85 0.004329 0.024731
GO:0080036 regulation of cytokinin-activated signaling pathway 1.27% (1/79) 7.76 0.004591 0.024977
GO:0080037 negative regulation of cytokinin-activated signaling pathway 1.27% (1/79) 7.76 0.004591 0.024977
GO:0031510 SUMO activating enzyme complex 1.27% (1/79) 7.76 0.004591 0.024977
GO:0019948 SUMO activating enzyme activity 1.27% (1/79) 7.76 0.004591 0.024977
GO:0065007 biological regulation 13.92% (11/79) 1.29 0.005033 0.027061
GO:0043021 ribonucleoprotein complex binding 2.53% (2/79) 4.15 0.005781 0.028405
GO:0045281 succinate dehydrogenase complex 1.27% (1/79) 7.43 0.005768 0.028653
GO:0070180 large ribosomal subunit rRNA binding 1.27% (1/79) 7.43 0.005768 0.028653
GO:0070300 phosphatidic acid binding 1.27% (1/79) 7.43 0.005768 0.028653
GO:0009099 valine biosynthetic process 1.27% (1/79) 7.37 0.00603 0.029006
GO:0071818 BAT3 complex 1.27% (1/79) 7.37 0.00603 0.029006
GO:0031323 regulation of cellular metabolic process 10.13% (8/79) 1.57 0.005661 0.029068
GO:0045257 succinate dehydrogenase complex (ubiquinone) 1.27% (1/79) 7.47 0.005638 0.029277
GO:0045283 fumarate reductase complex 1.27% (1/79) 7.47 0.005638 0.029277
GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) 1.27% (1/79) 7.47 0.005638 0.029277
GO:0031325 positive regulation of cellular metabolic process 3.8% (3/79) 2.99 0.006532 0.031096
GO:0060147 regulation of post-transcriptional gene silencing 1.27% (1/79) 7.19 0.006813 0.031773
GO:0019222 regulation of metabolic process 10.13% (8/79) 1.52 0.006804 0.032058
GO:0006549 isoleucine metabolic process 1.27% (1/79) 7.14 0.007075 0.032331
GO:0009097 isoleucine biosynthetic process 1.27% (1/79) 7.14 0.007075 0.032331
GO:0072379 ER membrane insertion complex 1.27% (1/79) 6.99 0.007858 0.035205
GO:0016530 metallochaperone activity 1.27% (1/79) 6.99 0.007858 0.035205
GO:0000244 spliceosomal tri-snRNP complex assembly 1.27% (1/79) 6.85 0.00864 0.038335
GO:0004448 isocitrate dehydrogenase [NAD(P)+] activity 1.27% (1/79) 6.81 0.008901 0.038739
GO:0006102 isocitrate metabolic process 1.27% (1/79) 6.81 0.008901 0.038739
GO:0009893 positive regulation of metabolic process 3.8% (3/79) 2.77 0.009864 0.038861
GO:0036402 proteasome-activating activity 1.27% (1/79) 6.7 0.009552 0.038976
GO:0051173 positive regulation of nitrogen compound metabolic process 3.8% (3/79) 2.8 0.009502 0.039121
GO:0010604 positive regulation of macromolecule metabolic process 3.8% (3/79) 2.78 0.009848 0.039136
GO:1902652 secondary alcohol metabolic process 1.27% (1/79) 6.72 0.009422 0.039143
GO:0016925 protein sumoylation 1.27% (1/79) 6.72 0.009422 0.039143
GO:0051787 misfolded protein binding 1.27% (1/79) 6.72 0.009422 0.039143
GO:0048522 positive regulation of cellular process 3.8% (3/79) 2.82 0.009102 0.039242
GO:1902494 catalytic complex 6.33% (5/79) 1.95 0.009805 0.039308
GO:0055038 recycling endosome membrane 1.27% (1/79) 6.63 0.010073 0.039344
GO:0000287 magnesium ion binding 2.53% (2/79) 3.76 0.00974 0.039392
GO:0045182 translation regulator activity 2.53% (2/79) 3.8 0.009298 0.039711
GO:0022618 protein-RNA complex assembly 2.53% (2/79) 3.7 0.010584 0.040991
GO:0000398 mRNA splicing, via spliceosome 2.53% (2/79) 3.68 0.010843 0.041642
GO:0071826 protein-RNA complex organization 2.53% (2/79) 3.66 0.011211 0.042696
GO:0032588 trans-Golgi network membrane 1.27% (1/79) 6.39 0.011893 0.04492
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 2.53% (2/79) 3.6 0.012017 0.045015
GO:0000245 spliceosomal complex assembly 1.27% (1/79) 6.23 0.013192 0.049014
GO:0089701 U2AF complex 1.27% (1/79) 6.15 0.01397 0.049878
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (79) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms