Coexpression cluster: Cluster_3304 (Co-expression clusters of Correr et al 2020 (PRJEB38368))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009631 cold acclimation 2.44% (2/82) 8.84 9e-06 0.002138
GO:0006880 intracellular sequestering of iron ion 2.44% (2/82) 8.06 2.7e-05 0.002555
GO:0097577 sequestering of iron ion 2.44% (2/82) 8.06 2.7e-05 0.002555
GO:0051238 sequestering of metal ion 2.44% (2/82) 8.06 2.7e-05 0.002555
GO:1902074 response to salt 3.66% (3/82) 6.32 8e-06 0.003841
GO:0043928 exonucleolytic catabolism of deadenylated mRNA 2.44% (2/82) 7.07 0.000107 0.004582
GO:0004535 poly(A)-specific ribonuclease activity 2.44% (2/82) 7.28 8e-05 0.004685
GO:0008199 ferric iron binding 2.44% (2/82) 7.11 0.000101 0.004767
GO:0010035 response to inorganic substance 3.66% (3/82) 5.13 9.5e-05 0.004963
GO:0009415 response to water 2.44% (2/82) 7.33 7.5e-05 0.005017
GO:0009409 response to cold 2.44% (2/82) 6.93 0.00013 0.00509
GO:0009414 response to water deprivation 2.44% (2/82) 7.35 7.3e-05 0.005725
GO:0009737 response to abscisic acid 2.44% (2/82) 6.63 0.000198 0.006188
GO:0097305 response to alcohol 2.44% (2/82) 6.63 0.000198 0.006188
GO:0006879 intracellular iron ion homeostasis 2.44% (2/82) 6.54 0.000225 0.006609
GO:0099080 supramolecular complex 4.88% (4/82) 3.85 0.000186 0.006707
GO:0006826 iron ion transport 2.44% (2/82) 6.46 0.000251 0.006946
GO:0050464 nitrate reductase (NADPH) activity 1.22% (1/82) 11.84 0.000273 0.007125
GO:0008198 ferrous iron binding 2.44% (2/82) 6.28 0.000318 0.007474
GO:0001101 response to acid chemical 2.44% (2/82) 6.24 0.000339 0.007576
GO:0140776 protein-containing complex destabilizing activity 1.22% (1/82) 11.25 0.000409 0.007695
GO:0008568 microtubule severing ATPase activity 1.22% (1/82) 11.25 0.000409 0.007695
GO:1901700 response to oxygen-containing compound 3.66% (3/82) 4.54 0.000315 0.007789
GO:0030014 CCR4-NOT complex 2.44% (2/82) 6.15 0.000381 0.008148
GO:0030015 CCR4-NOT core complex 2.44% (2/82) 6.11 0.000404 0.008251
GO:0033993 response to lipid 2.44% (2/82) 5.92 0.000525 0.009492
GO:0000291 nuclear-transcribed mRNA catabolic process, exonucleolytic 2.44% (2/82) 5.78 0.000638 0.011106
GO:0051651 maintenance of location in cell 2.44% (2/82) 5.72 0.000691 0.0116
GO:1901681 sulfur compound binding 2.44% (2/82) 5.45 0.000999 0.015652
GO:0051235 maintenance of location 2.44% (2/82) 5.47 0.000976 0.015813
GO:0008425 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity 1.22% (1/82) 9.67 0.001227 0.018028
GO:0030580 quinone cofactor methyltransferase activity 1.22% (1/82) 9.67 0.001227 0.018028
GO:0000226 microtubule cytoskeleton organization 3.66% (3/82) 3.82 0.001322 0.018832
GO:0010420 3,4-dihydroxy-5-polyprenylbenzoic acid O-methyltransferase activity 1.22% (1/82) 9.38 0.0015 0.020143
GO:0004395 hexaprenyldihydroxybenzoate methyltransferase activity 1.22% (1/82) 9.38 0.0015 0.020143
GO:0000175 3'-5'-RNA exonuclease activity 2.44% (2/82) 5.13 0.001552 0.020266
GO:0035657 eRF1 methyltransferase complex 1.22% (1/82) 9.25 0.001636 0.020785
GO:0016896 RNA exonuclease activity, producing 5'-phosphomonoesters 2.44% (2/82) 4.96 0.001961 0.023043
GO:0004532 RNA exonuclease activity 2.44% (2/82) 4.96 0.001961 0.023043
GO:0000041 transition metal ion transport 2.44% (2/82) 4.96 0.001953 0.024156
GO:0009628 response to abiotic stimulus 3.66% (3/82) 3.57 0.002142 0.024558
GO:0008940 nitrate reductase activity 1.22% (1/82) 8.25 0.00327 0.027942
GO:2001057 reactive nitrogen species metabolic process 1.22% (1/82) 8.25 0.00327 0.027942
GO:0046209 nitric oxide metabolic process 1.22% (1/82) 8.25 0.00327 0.027942
GO:0006809 nitric oxide biosynthetic process 1.22% (1/82) 8.25 0.00327 0.027942
GO:0042128 nitrate assimilation 1.22% (1/82) 8.25 0.00327 0.027942
GO:0050463 nitrate reductase [NAD(P)H] activity 1.22% (1/82) 8.25 0.00327 0.027942
GO:0042126 nitrate metabolic process 1.22% (1/82) 8.25 0.00327 0.027942
GO:0051013 microtubule severing 1.22% (1/82) 8.25 0.00327 0.027942
GO:0000932 P-body 2.44% (2/82) 4.77 0.002525 0.028251
GO:0008017 microtubule binding 3.66% (3/82) 3.46 0.002688 0.029376
GO:0009583 detection of light stimulus 1.22% (1/82) 8.03 0.003814 0.029385
GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor 1.22% (1/82) 8.03 0.003814 0.029385
GO:0009266 response to temperature stimulus 2.44% (2/82) 4.48 0.00374 0.029797
GO:1902170 cellular response to reactive nitrogen species 1.22% (1/82) 8.08 0.003678 0.029803
GO:0071249 cellular response to nitrate 1.22% (1/82) 8.08 0.003678 0.029803
GO:0009584 detection of visible light 1.22% (1/82) 8.08 0.003678 0.029803
GO:0007010 cytoskeleton organization 3.66% (3/82) 3.42 0.002884 0.030806
GO:0007017 microtubule-based process 3.66% (3/82) 3.22 0.004238 0.032124
GO:0035770 ribonucleoprotein granule 2.44% (2/82) 4.58 0.003248 0.032478
GO:0036464 cytoplasmic ribonucleoprotein granule 2.44% (2/82) 4.61 0.003155 0.032955
GO:0015631 tubulin binding 3.66% (3/82) 3.36 0.003226 0.032965
GO:0034655 nucleobase-containing compound catabolic process 3.66% (3/82) 3.18 0.004569 0.034087
GO:0071941 nitrogen cycle metabolic process 1.22% (1/82) 7.63 0.005037 0.036987
GO:1902025 nitrate import 1.22% (1/82) 7.55 0.005308 0.0378
GO:0015706 nitrate transmembrane transport 1.22% (1/82) 7.55 0.005308 0.0378
GO:0044270 cellular nitrogen compound catabolic process 3.66% (3/82) 3.06 0.0058 0.038942
GO:0046700 heterocycle catabolic process 3.66% (3/82) 3.06 0.0058 0.038942
GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors 1.22% (1/82) 7.45 0.005715 0.039503
GO:0008408 3'-5' exonuclease activity 2.44% (2/82) 4.17 0.005638 0.039548
GO:0032147 activation of protein kinase activity 1.22% (1/82) 7.35 0.006122 0.039965
GO:0098771 inorganic ion homeostasis 2.44% (2/82) 4.12 0.00606 0.040116
GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 2.44% (2/82) 4.09 0.006312 0.040638
GO:0004347 glucose-6-phosphate isomerase activity 1.22% (1/82) 7.25 0.006529 0.041469
GO:0000956 nuclear-transcribed mRNA catabolic process 2.44% (2/82) 4.05 0.006626 0.041522
GO:0051513 regulation of monopolar cell growth 1.22% (1/82) 7.14 0.007071 0.043163
GO:0051510 regulation of unidimensional cell growth 1.22% (1/82) 7.14 0.007071 0.043163
GO:0004185 serine-type carboxypeptidase activity 2.44% (2/82) 3.99 0.007245 0.043654
GO:0051606 detection of stimulus 1.22% (1/82) 6.96 0.008019 0.045411
GO:0009582 detection of abiotic stimulus 1.22% (1/82) 6.96 0.008019 0.045411
GO:0009581 detection of external stimulus 1.22% (1/82) 6.96 0.008019 0.045411
GO:0000719 photoreactive repair 1.22% (1/82) 6.86 0.008561 0.045723
GO:0006290 pyrimidine dimer repair 1.22% (1/82) 6.86 0.008561 0.045723
GO:0060236 regulation of mitotic spindle organization 1.22% (1/82) 6.91 0.00829 0.04584
GO:0090224 regulation of spindle organization 1.22% (1/82) 6.91 0.00829 0.04584
GO:1901361 organic cyclic compound catabolic process 3.66% (3/82) 2.86 0.00839 0.045854
GO:0070008 serine-type exopeptidase activity 2.44% (2/82) 3.84 0.008737 0.046138
GO:0042221 response to chemical 3.66% (3/82) 2.9 0.00778 0.046288
GO:0140603 obsolete ATP hydrolysis activity 1.22% (1/82) 6.79 0.008967 0.046826
GO:0019439 aromatic compound catabolic process 3.66% (3/82) 2.89 0.008005 0.047029
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (82) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms