Coexpression cluster: Cluster_704 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0042274 ribosomal small subunit biogenesis 3.77% (4/106) 7.77 0.0 1e-06
GO:0022613 ribonucleoprotein complex biogenesis 5.66% (6/106) 5.71 0.0 1e-06
GO:0004791 thioredoxin-disulfide reductase (NADP) activity 2.83% (3/106) 7.97 0.0 4.8e-05
GO:1990904 ribonucleoprotein complex 8.49% (9/106) 3.31 0.0 5.3e-05
GO:0097428 protein maturation by iron-sulfur cluster transfer 2.83% (3/106) 7.44 1e-06 8.7e-05
GO:0044085 cellular component biogenesis 5.66% (6/106) 4.19 1e-06 0.000105
GO:0003924 GTPase activity 5.66% (6/106) 4.03 2e-06 0.00017
GO:0043226 organelle 22.64% (24/106) 1.47 4e-06 0.000206
GO:0043229 intracellular organelle 22.64% (24/106) 1.47 4e-06 0.000228
GO:0016668 oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor 2.83% (3/106) 6.73 4e-06 0.000237
GO:1901566 organonitrogen compound biosynthetic process 8.49% (9/106) 2.77 8e-06 0.000282
GO:0032991 protein-containing complex 16.04% (17/106) 1.79 8e-06 0.0003
GO:0030684 preribosome 4.72% (5/106) 4.26 7e-06 0.000304
GO:0006810 transport 14.15% (15/106) 1.93 9e-06 0.000312
GO:0005575 cellular_component 38.68% (41/106) 0.95 7e-06 0.000329
GO:0008150 biological_process 48.11% (51/106) 0.79 7e-06 0.000356
GO:0046923 ER retention sequence binding 1.89% (2/106) 8.61 1.2e-05 0.000398
GO:0005198 structural molecule activity 5.66% (6/106) 3.57 1.3e-05 0.000403
GO:0019781 NEDD8 activating enzyme activity 1.89% (2/106) 8.42 1.6e-05 0.000419
GO:0071840 cellular component organization or biogenesis 12.26% (13/106) 2.06 1.6e-05 0.000425
GO:0051234 establishment of localization 14.15% (15/106) 1.87 1.6e-05 0.000443
GO:0042803 protein homodimerization activity 1.89% (2/106) 8.15 2.4e-05 0.000499
GO:0031624 ubiquitin conjugating enzyme binding 2.83% (3/106) 5.88 2e-05 0.000504
GO:0051179 localization 14.15% (15/106) 1.81 2.4e-05 0.000515
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process 2.83% (3/106) 5.7 3e-05 0.000521
GO:2000060 positive regulation of ubiquitin-dependent protein catabolic process 2.83% (3/106) 5.7 3e-05 0.000521
GO:0016226 iron-sulfur cluster assembly 2.83% (3/106) 5.81 2.4e-05 0.000532
GO:0031163 metallo-sulfur cluster assembly 2.83% (3/106) 5.81 2.4e-05 0.000532
GO:0016192 vesicle-mediated transport 6.6% (7/106) 3.01 3e-05 0.000553
GO:0000814 ESCRT II complex 1.89% (2/106) 8.04 2.8e-05 0.000556
GO:0044390 ubiquitin-like protein conjugating enzyme binding 2.83% (3/106) 5.65 3.3e-05 0.000557
GO:0006412 translation 4.72% (5/106) 3.85 2.9e-05 0.000564
GO:1903052 positive regulation of proteolysis involved in protein catabolic process 2.83% (3/106) 5.56 4e-05 0.000565
GO:1901800 positive regulation of proteasomal protein catabolic process 2.83% (3/106) 5.56 4e-05 0.000565
GO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolic process 2.83% (3/106) 5.53 4.2e-05 0.000578
GO:0032561 guanyl ribonucleotide binding 4.72% (5/106) 3.71 4.6e-05 0.000581
GO:0005525 GTP binding 4.72% (5/106) 3.71 4.6e-05 0.000581
GO:0051539 4 iron, 4 sulfur cluster binding 2.83% (3/106) 5.59 3.7e-05 0.000586
GO:0043231 intracellular membrane-bounded organelle 18.87% (20/106) 1.43 4.4e-05 0.000586
GO:0006621 protein retention in ER lumen 1.89% (2/106) 7.8 3.9e-05 0.000588
GO:0035437 maintenance of protein localization in endoplasmic reticulum 1.89% (2/106) 7.8 3.9e-05 0.000588
GO:0003674 molecular_function 54.72% (58/106) 0.63 3.6e-05 0.000592
GO:0043227 membrane-bounded organelle 18.87% (20/106) 1.42 4.9e-05 0.000593
GO:0043043 peptide biosynthetic process 4.72% (5/106) 3.72 4.4e-05 0.000594
GO:2000058 regulation of ubiquitin-dependent protein catabolic process 2.83% (3/106) 5.45 4.9e-05 0.000604
GO:0045862 positive regulation of proteolysis 2.83% (3/106) 5.41 5.4e-05 0.000623
GO:0019001 guanyl nucleotide binding 4.72% (5/106) 3.66 5.3e-05 0.000625
GO:0061136 regulation of proteasomal protein catabolic process 2.83% (3/106) 5.3 6.7e-05 0.000725
GO:0045732 positive regulation of protein catabolic process 2.83% (3/106) 5.31 6.6e-05 0.000735
GO:0045116 protein neddylation 1.89% (2/106) 7.42 6.6e-05 0.000741
GO:1903050 regulation of proteolysis involved in protein catabolic process 2.83% (3/106) 5.23 7.7e-05 0.000818
GO:0030162 regulation of proteolysis 2.83% (3/106) 5.1 0.000102 0.000968
GO:0009987 cellular process 33.96% (36/106) 0.88 0.000101 0.000981
GO:0000056 ribosomal small subunit export from nucleus 1.89% (2/106) 7.15 9.7e-05 0.000987
GO:0044391 ribosomal subunit 3.77% (4/106) 4.11 9.5e-05 0.00099
GO:0110165 cellular anatomical entity 33.02% (35/106) 0.9 0.000101 0.000996
GO:0006518 peptide metabolic process 4.72% (5/106) 3.46 0.0001 0.001008
GO:0072595 maintenance of protein localization in organelle 1.89% (2/106) 7.06 0.000109 0.001018
GO:0042176 regulation of protein catabolic process 2.83% (3/106) 5.05 0.000112 0.001027
GO:0015935 small ribosomal subunit 2.83% (3/106) 5.02 0.000119 0.001075
GO:0016667 oxidoreductase activity, acting on a sulfur group of donors 2.83% (3/106) 4.96 0.000136 0.001205
GO:0043604 amide biosynthetic process 4.72% (5/106) 3.33 0.000156 0.001361
GO:0005801 cis-Golgi network 1.89% (2/106) 6.71 0.000176 0.001513
GO:0017111 ribonucleoside triphosphate phosphatase activity 6.6% (7/106) 2.58 0.000187 0.001581
GO:0030688 preribosome, small subunit precursor 1.89% (2/106) 6.59 0.00021 0.001751
GO:0016462 pyrophosphatase activity 6.6% (7/106) 2.48 0.00028 0.002234
GO:0003735 structural constituent of ribosome 3.77% (4/106) 3.7 0.000277 0.00224
GO:0009896 positive regulation of catabolic process 2.83% (3/106) 4.61 0.000275 0.002261
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 6.6% (7/106) 2.46 0.00031 0.002438
GO:0016817 hydrolase activity, acting on acid anhydrides 6.6% (7/106) 2.45 0.000328 0.002543
GO:0000209 protein polyubiquitination 2.83% (3/106) 4.43 0.000392 0.002991
GO:1901564 organonitrogen compound metabolic process 18.87% (20/106) 1.19 0.000419 0.003031
GO:0051536 iron-sulfur cluster binding 2.83% (3/106) 4.4 0.000414 0.003032
GO:0051540 metal cluster binding 2.83% (3/106) 4.4 0.000414 0.003032
GO:0032040 small-subunit processome 2.83% (3/106) 4.41 0.000411 0.003093
GO:0051604 protein maturation 2.83% (3/106) 4.35 0.000465 0.003317
GO:0046907 intracellular transport 5.66% (6/106) 2.61 0.000497 0.003499
GO:0019899 enzyme binding 3.77% (4/106) 3.46 0.000522 0.003626
GO:0006790 sulfur compound metabolic process 3.77% (4/106) 3.44 0.000543 0.003724
GO:0051649 establishment of localization in cell 5.66% (6/106) 2.56 0.000593 0.003873
GO:0043603 amide metabolic process 4.72% (5/106) 2.91 0.000588 0.003888
GO:0015086 cadmium ion transmembrane transporter activity 1.89% (2/106) 5.84 0.000588 0.003932
GO:0003723 RNA binding 8.49% (9/106) 1.95 0.000587 0.003976
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 1.89% (2/106) 5.75 0.00066 0.004261
GO:0051246 regulation of protein metabolic process 3.77% (4/106) 3.36 0.000679 0.004332
GO:0051247 positive regulation of protein metabolic process 2.83% (3/106) 4.12 0.000732 0.004612
GO:0032507 maintenance of protein location in cell 1.89% (2/106) 5.67 0.000744 0.004633
GO:0045185 maintenance of protein location 1.89% (2/106) 5.66 0.000757 0.004662
GO:0006364 rRNA processing 3.77% (4/106) 3.27 0.000841 0.005067
GO:0036452 ESCRT complex 1.89% (2/106) 5.58 0.000839 0.005109
GO:0042802 identical protein binding 1.89% (2/106) 5.49 0.000955 0.005685
GO:0032446 protein modification by small protein conjugation 4.72% (5/106) 2.73 0.001002 0.005903
GO:0009570 chloroplast stroma 2.83% (3/106) 3.92 0.001091 0.006289
GO:0009532 plastid stroma 2.83% (3/106) 3.92 0.001091 0.006289
GO:0016072 rRNA metabolic process 3.77% (4/106) 3.16 0.001123 0.006408
GO:0051651 maintenance of location in cell 1.89% (2/106) 5.35 0.00115 0.00649
GO:0005739 mitochondrion 4.72% (5/106) 2.68 0.001164 0.006507
GO:0009894 regulation of catabolic process 2.83% (3/106) 3.88 0.001188 0.006568
GO:0008641 ubiquitin-like modifier activating enzyme activity 1.89% (2/106) 5.31 0.001216 0.006656
GO:0042273 ribosomal large subunit biogenesis 1.89% (2/106) 5.29 0.001249 0.006705
GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway 1.89% (2/106) 5.29 0.001241 0.006726
GO:0019538 protein metabolic process 15.09% (16/106) 1.22 0.001352 0.007183
GO:0033750 ribosome localization 1.89% (2/106) 5.17 0.001461 0.007615
GO:0000054 ribosomal subunit export from nucleus 1.89% (2/106) 5.17 0.001461 0.007615
GO:0051235 maintenance of location 1.89% (2/106) 5.1 0.001621 0.008287
GO:0005384 manganese ion transmembrane transporter activity 1.89% (2/106) 5.1 0.001621 0.008287
GO:0006807 nitrogen compound metabolic process 22.64% (24/106) 0.91 0.001643 0.008322
GO:0031503 protein-containing complex localization 1.89% (2/106) 5.06 0.001699 0.008524
GO:0022607 cellular component assembly 4.72% (5/106) 2.55 0.001741 0.00866
GO:0032509 endosome transport via multivesicular body sorting pathway 1.89% (2/106) 4.99 0.00187 0.009049
GO:0071985 multivesicular body sorting pathway 1.89% (2/106) 4.99 0.00187 0.009049
GO:0006396 RNA processing 5.66% (6/106) 2.23 0.001865 0.009189
GO:0090069 regulation of ribosome biogenesis 0.94% (1/106) 9.01 0.001939 0.009217
GO:0090071 negative regulation of ribosome biogenesis 0.94% (1/106) 9.01 0.001939 0.009217
GO:0016787 hydrolase activity 13.21% (14/106) 1.27 0.001995 0.009403
GO:0008930 methylthioadenosine nucleosidase activity 0.94% (1/106) 8.88 0.002115 0.009881
GO:0022627 cytosolic small ribosomal subunit 1.89% (2/106) 4.86 0.002236 0.010357
GO:0005840 ribosome 2.83% (3/106) 3.51 0.002427 0.011147
GO:0004416 hydroxyacylglutathione hydrolase activity 0.94% (1/106) 8.66 0.002467 0.011235
GO:0016209 antioxidant activity 2.83% (3/106) 3.48 0.002581 0.011657
GO:1901607 alpha-amino acid biosynthetic process 2.83% (3/106) 3.46 0.002682 0.012013
GO:0030686 90S preribosome 1.89% (2/106) 4.71 0.002731 0.012033
GO:0070647 protein modification by small protein conjugation or removal 4.72% (5/106) 2.4 0.002719 0.01208
GO:0061630 ubiquitin protein ligase activity 2.83% (3/106) 3.43 0.002841 0.012417
GO:0045324 late endosome to vacuole transport 1.89% (2/106) 4.68 0.002868 0.012436
GO:0000151 ubiquitin ligase complex 2.83% (3/106) 3.41 0.00299 0.012759
GO:0051641 cellular localization 5.66% (6/106) 2.09 0.002985 0.012841
GO:0009067 aspartate family amino acid biosynthetic process 1.89% (2/106) 4.59 0.003219 0.013318
GO:0061659 ubiquitin-like protein ligase activity 2.83% (3/106) 3.37 0.003203 0.013352
GO:0072666 establishment of protein localization to vacuole 1.89% (2/106) 4.6 0.003179 0.013357
GO:0072665 protein localization to vacuole 1.89% (2/106) 4.6 0.003179 0.013357
GO:0008652 amino acid biosynthetic process 2.83% (3/106) 3.35 0.003335 0.013692
GO:0003006 developmental process involved in reproduction 1.89% (2/106) 4.51 0.003603 0.014682
GO:0044238 primary metabolic process 24.53% (26/106) 0.77 0.003922 0.015864
GO:0005048 signal sequence binding 1.89% (2/106) 4.43 0.004022 0.016146
GO:0018580 nitronate monooxygenase activity 0.94% (1/106) 7.83 0.004401 0.017538
GO:0071704 organic substance metabolic process 25.47% (27/106) 0.74 0.004438 0.017558
GO:0042277 peptide binding 1.89% (2/106) 4.31 0.004682 0.018389
GO:0051603 proteolysis involved in protein catabolic process 3.77% (4/106) 2.57 0.004792 0.018687
GO:0044249 cellular biosynthetic process 8.49% (9/106) 1.49 0.004863 0.018827
GO:1990610 acetolactate synthase regulator activity 0.94% (1/106) 7.61 0.005103 0.019615
GO:0009066 aspartate family amino acid metabolic process 1.89% (2/106) 4.24 0.005187 0.0198
GO:0035352 NAD transmembrane transport 0.94% (1/106) 7.56 0.005278 0.019867
GO:0051724 NAD transmembrane transporter activity 0.94% (1/106) 7.56 0.005278 0.019867
GO:0003984 acetolactate synthase activity 0.94% (1/106) 7.42 0.005805 0.021549
GO:0044271 cellular nitrogen compound biosynthetic process 5.66% (6/106) 1.9 0.005787 0.02163
GO:0015932 nucleobase-containing compound transmembrane transporter activity 1.89% (2/106) 4.12 0.006052 0.022316
GO:0043687 post-translational protein modification 4.72% (5/106) 2.1 0.006485 0.023749
GO:0003824 catalytic activity 28.3% (30/106) 0.64 0.00657 0.023899
GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity 0.94% (1/106) 7.22 0.006681 0.024142
GO:0046915 transition metal ion transmembrane transporter activity 1.89% (2/106) 4.03 0.006826 0.024502
GO:0008477 purine nucleosidase activity 0.94% (1/106) 7.15 0.007032 0.025074
GO:0071705 nitrogen compound transport 4.72% (5/106) 2.07 0.007138 0.025288
GO:0034470 ncRNA processing 3.77% (4/106) 2.39 0.007439 0.026183
GO:0033218 amide binding 1.89% (2/106) 3.95 0.007583 0.026346
GO:0006228 UTP biosynthetic process 0.94% (1/106) 7.01 0.007732 0.026358
GO:0043132 NAD transport 0.94% (1/106) 7.01 0.007732 0.026358
GO:0046051 UTP metabolic process 0.94% (1/106) 7.01 0.007732 0.026358
GO:0007034 vacuolar transport 1.89% (2/106) 3.96 0.007563 0.026447
GO:0051656 establishment of organelle localization 1.89% (2/106) 3.9 0.008128 0.027363
GO:0009099 valine biosynthetic process 0.94% (1/106) 6.95 0.008082 0.027379
GO:1901576 organic substance biosynthetic process 8.49% (9/106) 1.37 0.00824 0.027568
GO:0008152 metabolic process 25.47% (27/106) 0.67 0.00848 0.028196
GO:0030620 U2 snRNA binding 0.94% (1/106) 6.83 0.008782 0.029023
GO:0009097 isoleucine biosynthetic process 0.94% (1/106) 6.71 0.009481 0.030957
GO:0006549 isoleucine metabolic process 0.94% (1/106) 6.71 0.009481 0.030957
GO:1901605 alpha-amino acid metabolic process 2.83% (3/106) 2.79 0.009687 0.031441
GO:0043170 macromolecule metabolic process 18.87% (20/106) 0.79 0.010095 0.03257
GO:0043228 non-membrane-bounded organelle 4.72% (5/106) 1.92 0.010903 0.033387
GO:0043232 intracellular non-membrane-bounded organelle 4.72% (5/106) 1.92 0.010897 0.033559
GO:0071265 L-methionine biosynthetic process 0.94% (1/106) 6.49 0.011053 0.033655
GO:0006183 GTP biosynthetic process 0.94% (1/106) 6.51 0.010878 0.033692
GO:0046039 GTP metabolic process 0.94% (1/106) 6.51 0.010878 0.033692
GO:0071267 L-methionine salvage 0.94% (1/106) 6.54 0.010704 0.033729
GO:0019509 L-methionine salvage from methylthioadenosine 0.94% (1/106) 6.54 0.010704 0.033729
GO:0043102 amino acid salvage 0.94% (1/106) 6.54 0.010704 0.033729
GO:0016877 ligase activity, forming carbon-sulfur bonds 1.89% (2/106) 3.71 0.010523 0.03375
GO:0016197 endosomal transport 1.89% (2/106) 3.68 0.010825 0.033914
GO:0009058 biosynthetic process 8.49% (9/106) 1.3 0.011301 0.034219
GO:0009059 macromolecule biosynthetic process 4.72% (5/106) 1.9 0.011372 0.034241
GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) 0.94% (1/106) 6.42 0.011576 0.034664
GO:0009368 endopeptidase Clp complex 0.94% (1/106) 6.3 0.012622 0.037588
GO:0006511 ubiquitin-dependent protein catabolic process 2.83% (3/106) 2.64 0.012783 0.037861
GO:0015689 molybdate ion transport 0.94% (1/106) 6.17 0.013841 0.040549
GO:0015098 molybdate ion transmembrane transporter activity 0.94% (1/106) 6.17 0.013841 0.040549
GO:0004550 nucleoside diphosphate kinase activity 0.94% (1/106) 6.13 0.014188 0.041345
GO:0004842 ubiquitin-protein transferase activity 2.83% (3/106) 2.58 0.014286 0.041408
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 1.89% (2/106) 3.45 0.014704 0.042392
GO:0005488 binding 32.08% (34/106) 0.51 0.015485 0.044408
GO:0043248 proteasome assembly 0.94% (1/106) 5.98 0.015753 0.044701
GO:0019787 ubiquitin-like protein transferase activity 2.83% (3/106) 2.53 0.015675 0.044716
GO:0006529 asparagine biosynthetic process 0.94% (1/106) 5.96 0.015926 0.044725
GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity 0.94% (1/106) 5.96 0.015926 0.044725
GO:0019941 modification-dependent protein catabolic process 2.83% (3/106) 2.5 0.016426 0.045891
GO:0016755 aminoacyltransferase activity 2.83% (3/106) 2.49 0.016657 0.046297
GO:0034388 Pwp2p-containing subcomplex of 90S preribosome 0.94% (1/106) 5.88 0.016794 0.04644
GO:0005634 nucleus 8.49% (9/106) 1.2 0.016996 0.046759
GO:0005829 cytosol 4.72% (5/106) 1.73 0.017912 0.0483
GO:1901679 nucleotide transmembrane transport 0.94% (1/106) 5.8 0.017834 0.048331
GO:0072530 purine-containing compound transmembrane transport 0.94% (1/106) 5.81 0.017661 0.048345
GO:0006508 proteolysis 4.72% (5/106) 1.74 0.017791 0.048457
GO:0016053 organic acid biosynthetic process 2.83% (3/106) 2.44 0.018367 0.048799
GO:0046394 carboxylic acid biosynthetic process 2.83% (3/106) 2.44 0.018367 0.048799
GO:0043632 modification-dependent macromolecule catabolic process 2.83% (3/106) 2.44 0.018306 0.049118
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (106) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms