Coexpression cluster: Cluster_873 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0032044 DSIF complex 3.33% (4/120) 8.59 0.0 0.0
GO:0036258 multivesicular body assembly 3.33% (4/120) 8.62 0.0 0.0
GO:0070676 intralumenal vesicle formation 3.33% (4/120) 8.62 0.0 0.0
GO:0036257 multivesicular body organization 3.33% (4/120) 8.62 0.0 0.0
GO:0009889 regulation of biosynthetic process 17.5% (21/120) 2.47 0.0 0.0
GO:0031326 regulation of cellular biosynthetic process 17.5% (21/120) 2.47 0.0 0.0
GO:0010556 regulation of macromolecule biosynthetic process 17.5% (21/120) 2.49 0.0 0.0
GO:0060255 regulation of macromolecule metabolic process 17.5% (21/120) 2.36 0.0 0.0
GO:0031323 regulation of cellular metabolic process 17.5% (21/120) 2.35 0.0 0.0
GO:0010468 regulation of gene expression 17.5% (21/120) 2.5 0.0 0.0
GO:0019222 regulation of metabolic process 17.5% (21/120) 2.31 0.0 0.0
GO:0000813 ESCRT I complex 3.33% (4/120) 7.86 0.0 0.0
GO:0051252 regulation of RNA metabolic process 14.17% (17/120) 2.53 0.0 0.0
GO:0051171 regulation of nitrogen compound metabolic process 15.0% (18/120) 2.37 0.0 0.0
GO:0031902 late endosome membrane 3.33% (4/120) 7.41 0.0 0.0
GO:0019219 regulation of nucleobase-containing compound metabolic process 14.17% (17/120) 2.47 0.0 0.0
GO:0080090 regulation of primary metabolic process 15.0% (18/120) 2.36 0.0 0.0
GO:2001141 regulation of RNA biosynthetic process 13.33% (16/120) 2.51 0.0 1e-06
GO:0006355 regulation of DNA-templated transcription 13.33% (16/120) 2.51 0.0 1e-06
GO:0050794 regulation of cellular process 19.17% (23/120) 1.93 0.0 1e-06
GO:0050789 regulation of biological process 19.17% (23/120) 1.86 0.0 2e-06
GO:0007032 endosome organization 3.33% (4/120) 6.52 0.0 3e-06
GO:0006368 transcription elongation by RNA polymerase II 3.33% (4/120) 6.44 0.0 3e-06
GO:0042221 response to chemical 6.67% (8/120) 3.77 0.0 3e-06
GO:0036452 ESCRT complex 3.33% (4/120) 6.4 0.0 3e-06
GO:0006354 DNA-templated transcription elongation 3.33% (4/120) 6.37 0.0 3e-06
GO:0065007 biological regulation 19.17% (23/120) 1.75 0.0 4e-06
GO:0006900 vesicle budding from membrane 3.33% (4/120) 6.07 0.0 7e-06
GO:0005515 protein binding 21.67% (26/120) 1.53 1e-06 1.1e-05
GO:0008023 transcription elongation factor complex 3.33% (4/120) 5.68 1e-06 1.9e-05
GO:0006357 regulation of transcription by RNA polymerase II 6.67% (8/120) 3.33 2e-06 2.2e-05
GO:0032784 regulation of DNA-templated transcription elongation 3.33% (4/120) 5.57 2e-06 2.4e-05
GO:0009725 response to hormone 4.17% (5/120) 4.49 3e-06 4.4e-05
GO:0009719 response to endogenous stimulus 4.17% (5/120) 4.33 6e-06 7.4e-05
GO:0043130 ubiquitin binding 3.33% (4/120) 5.07 7e-06 8.8e-05
GO:0070274 RES complex 1.67% (2/120) 8.97 7e-06 8.8e-05
GO:0010008 endosome membrane 3.33% (4/120) 5.02 8e-06 9.5e-05
GO:0032182 ubiquitin-like protein binding 3.33% (4/120) 5.0 9e-06 9.8e-05
GO:0005488 binding 40.0% (48/120) 0.83 1.4e-05 0.000153
GO:0017007 protein-bilin linkage 1.67% (2/120) 8.38 1.7e-05 0.000177
GO:0017009 protein-phycocyanobilin linkage 1.67% (2/120) 8.38 1.7e-05 0.000177
GO:0012506 vesicle membrane 3.33% (4/120) 4.73 1.8e-05 0.00018
GO:0030659 cytoplasmic vesicle membrane 3.33% (4/120) 4.73 1.8e-05 0.00018
GO:0034599 cellular response to oxidative stress 2.5% (3/120) 5.88 2e-05 0.000197
GO:0000302 response to reactive oxygen species 2.5% (3/120) 5.87 2.1e-05 0.000197
GO:0062197 cellular response to chemical stress 2.5% (3/120) 5.85 2.2e-05 0.000202
GO:0016050 vesicle organization 3.33% (4/120) 4.62 2.4e-05 0.000217
GO:0017006 protein-tetrapyrrole linkage 1.67% (2/120) 8.0 2.9e-05 0.000258
GO:0070925 organelle assembly 3.33% (4/120) 4.26 6.3e-05 0.000544
GO:0010033 response to organic substance 4.17% (5/120) 3.45 0.000105 0.00089
GO:0003676 nucleic acid binding 16.67% (20/120) 1.34 0.00011 0.000919
GO:0042743 hydrogen peroxide metabolic process 2.5% (3/120) 4.98 0.000129 0.001036
GO:0042744 hydrogen peroxide catabolic process 2.5% (3/120) 4.98 0.000129 0.001036
GO:0070887 cellular response to chemical stimulus 2.5% (3/120) 4.87 0.00016 0.001259
GO:0003674 molecular_function 51.67% (62/120) 0.55 0.000183 0.001413
GO:0072593 reactive oxygen species metabolic process 2.5% (3/120) 4.72 0.000221 0.001671
GO:0061024 membrane organization 3.33% (4/120) 3.54 0.00042 0.003125
GO:0003729 mRNA binding 4.17% (5/120) 2.89 0.000629 0.004519
GO:0034654 nucleobase-containing compound biosynthetic process 5.0% (6/120) 2.55 0.000626 0.004573
GO:0003677 DNA binding 9.17% (11/120) 1.64 0.000881 0.006226
GO:1901700 response to oxygen-containing compound 2.5% (3/120) 3.99 0.000955 0.006638
GO:0051254 positive regulation of RNA metabolic process 3.33% (4/120) 3.16 0.001133 0.007749
GO:0008237 metallopeptidase activity 2.5% (3/120) 3.89 0.001152 0.00775
GO:0008936 nicotinamidase activity 0.83% (1/120) 9.7 0.001198 0.007934
GO:0045944 positive regulation of transcription by RNA polymerase II 2.5% (3/120) 3.78 0.001446 0.009015
GO:0031267 small GTPase binding 1.67% (2/120) 5.19 0.001427 0.009033
GO:0051020 GTPase binding 1.67% (2/120) 5.19 0.001427 0.009033
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 3.33% (4/120) 3.08 0.001385 0.009035
GO:0004176 ATP-dependent peptidase activity 1.67% (2/120) 5.0 0.001866 0.0113
GO:0007030 Golgi organization 1.67% (2/120) 5.0 0.001854 0.011393
GO:0018130 heterocycle biosynthetic process 5.0% (6/120) 2.19 0.002218 0.013245
GO:0140513 nuclear protein-containing complex 5.83% (7/120) 1.97 0.002252 0.013263
GO:0004601 peroxidase activity 2.5% (3/120) 3.51 0.002453 0.013867
GO:0016684 oxidoreductase activity, acting on peroxide as acceptor 2.5% (3/120) 3.51 0.002453 0.013867
GO:0044271 cellular nitrogen compound biosynthetic process 5.83% (7/120) 1.94 0.002508 0.013993
GO:0032774 RNA biosynthetic process 3.33% (4/120) 2.86 0.002412 0.014011
GO:0008150 biological_process 40.0% (48/120) 0.52 0.002637 0.014519
GO:0031325 positive regulation of cellular metabolic process 3.33% (4/120) 2.81 0.002728 0.014831
GO:0019438 aromatic compound biosynthetic process 5.0% (6/120) 2.11 0.002841 0.015247
GO:0005840 ribosome 2.5% (3/120) 3.33 0.003443 0.018249
GO:0006979 response to oxidative stress 2.5% (3/120) 3.31 0.0036 0.018844
GO:0016209 antioxidant activity 2.5% (3/120) 3.3 0.00366 0.018924
GO:0034249 negative regulation of amide metabolic process 1.67% (2/120) 4.45 0.003899 0.019451
GO:0017148 negative regulation of translation 1.67% (2/120) 4.45 0.003899 0.019451
GO:0032991 protein-containing complex 10.83% (13/120) 1.23 0.003832 0.019577
GO:0043228 non-membrane-bounded organelle 5.0% (6/120) 2.0 0.004139 0.020172
GO:0048522 positive regulation of cellular process 3.33% (4/120) 2.63 0.004203 0.020253
GO:0043232 intracellular non-membrane-bounded organelle 5.0% (6/120) 2.0 0.004137 0.020394
GO:0051173 positive regulation of nitrogen compound metabolic process 3.33% (4/120) 2.61 0.004445 0.021177
GO:1901362 organic cyclic compound biosynthetic process 5.0% (6/120) 1.96 0.00468 0.021336
GO:0016043 cellular component organization 7.5% (9/120) 1.5 0.004765 0.021492
GO:0009893 positive regulation of metabolic process 3.33% (4/120) 2.59 0.004667 0.021507
GO:0010604 positive regulation of macromolecule metabolic process 3.33% (4/120) 2.59 0.004657 0.021698
GO:0005684 U2-type spliceosomal complex 1.67% (2/120) 4.32 0.004641 0.021863
GO:1901006 ubiquinone-6 biosynthetic process 0.83% (1/120) 7.54 0.005378 0.022355
GO:1901004 ubiquinone-6 metabolic process 0.83% (1/120) 7.54 0.005378 0.022355
GO:0006338 chromatin remodeling 2.5% (3/120) 3.13 0.005076 0.022656
GO:0005615 extracellular space 1.67% (2/120) 4.25 0.005137 0.022688
GO:0016071 mRNA metabolic process 3.33% (4/120) 2.53 0.005359 0.022723
GO:0003735 structural constituent of ribosome 2.5% (3/120) 3.11 0.005316 0.022769
GO:0000932 P-body 1.67% (2/120) 4.22 0.005308 0.022963
GO:0003723 RNA binding 6.67% (8/120) 1.6 0.005265 0.023016
GO:0097159 organic cyclic compound binding 23.33% (28/120) 0.7 0.005775 0.023771
GO:0005575 cellular_component 30.0% (36/120) 0.59 0.005886 0.023996
GO:0004222 metalloendopeptidase activity 1.67% (2/120) 4.12 0.006056 0.024455
GO:0006325 chromatin organization 2.5% (3/120) 3.01 0.006428 0.025713
GO:0036464 cytoplasmic ribonucleoprotein granule 1.67% (2/120) 4.06 0.006615 0.025734
GO:0045893 positive regulation of DNA-templated transcription 2.5% (3/120) 3.0 0.00658 0.025832
GO:1902680 positive regulation of RNA biosynthetic process 2.5% (3/120) 3.0 0.00658 0.025832
GO:0035770 ribonucleoprotein granule 1.67% (2/120) 4.03 0.006807 0.026238
GO:0051248 negative regulation of protein metabolic process 1.67% (2/120) 3.99 0.007197 0.027493
GO:0006412 translation 2.5% (3/120) 2.93 0.007451 0.027959
GO:0006996 organelle organization 5.0% (6/120) 1.82 0.007397 0.028003
GO:0004181 metallocarboxypeptidase activity 0.83% (1/120) 7.04 0.00756 0.02812
GO:0070012 oligopeptidase activity 0.83% (1/120) 7.0 0.007759 0.028606
GO:0048518 positive regulation of biological process 3.33% (4/120) 2.37 0.007869 0.028763
GO:0044248 cellular catabolic process 4.17% (5/120) 2.03 0.008043 0.029149
GO:0040029 epigenetic regulation of gene expression 1.67% (2/120) 3.79 0.009421 0.032742
GO:0016070 RNA metabolic process 6.67% (8/120) 1.46 0.009168 0.032942
GO:0043043 peptide biosynthetic process 2.5% (3/120) 2.8 0.009414 0.03299
GO:0071840 cellular component organization or biogenesis 7.5% (9/120) 1.35 0.00941 0.033248
GO:0098588 bounding membrane of organelle 3.33% (4/120) 2.3 0.00936 0.03335
GO:0010048 vernalization response 0.83% (1/120) 6.68 0.009738 0.03357
GO:0098796 membrane protein complex 3.33% (4/120) 2.25 0.010314 0.035267
GO:0019365 pyridine nucleotide salvage 0.83% (1/120) 6.56 0.010529 0.035715
GO:0140673 transcription elongation-coupled chromatin remodeling 0.83% (1/120) 6.51 0.010924 0.036762
GO:0009891 positive regulation of biosynthetic process 2.5% (3/120) 2.7 0.011387 0.037427
GO:0031328 positive regulation of cellular biosynthetic process 2.5% (3/120) 2.7 0.011387 0.037427
GO:0010557 positive regulation of macromolecule biosynthetic process 2.5% (3/120) 2.7 0.011387 0.037427
GO:0071824 protein-DNA complex organization 2.5% (3/120) 2.68 0.011827 0.038573
GO:0004594 pantothenate kinase activity 0.83% (1/120) 6.2 0.013489 0.04366
GO:0010629 negative regulation of gene expression 2.5% (3/120) 2.61 0.013624 0.043762
GO:0000956 nuclear-transcribed mRNA catabolic process 1.67% (2/120) 3.5 0.013732 0.043776
GO:0006417 regulation of translation 1.67% (2/120) 3.47 0.014294 0.044894
GO:0034248 regulation of amide metabolic process 1.67% (2/120) 3.47 0.014294 0.044894
GO:0006518 peptide metabolic process 2.5% (3/120) 2.55 0.0151 0.047075
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 0.83% (1/120) 6.0 0.015458 0.04784
GO:0110165 cellular anatomical entity 25.83% (31/120) 0.55 0.016136 0.049577
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (120) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms