Coexpression cluster: Cluster_782 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016192 vesicle-mediated transport 23.16% (22/95) 4.82 0.0 0.0
GO:0030117 membrane coat 15.79% (15/95) 6.6 0.0 0.0
GO:0006886 intracellular protein transport 18.95% (18/95) 5.14 0.0 0.0
GO:0046907 intracellular transport 21.05% (20/95) 4.5 0.0 0.0
GO:0051649 establishment of localization in cell 21.05% (20/95) 4.45 0.0 0.0
GO:0015031 protein transport 18.95% (18/95) 4.81 0.0 0.0
GO:0045184 establishment of protein localization 18.95% (18/95) 4.5 0.0 0.0
GO:0005198 structural molecule activity 15.79% (15/95) 5.05 0.0 0.0
GO:0051641 cellular localization 21.05% (20/95) 3.99 0.0 0.0
GO:0033036 macromolecule localization 18.95% (18/95) 4.34 0.0 0.0
GO:0070727 cellular macromolecule localization 18.95% (18/95) 4.34 0.0 0.0
GO:0008104 protein localization 18.95% (18/95) 4.34 0.0 0.0
GO:0071702 organic substance transport 21.05% (20/95) 3.9 0.0 0.0
GO:0098796 membrane protein complex 16.84% (16/95) 4.59 0.0 0.0
GO:0071705 nitrogen compound transport 18.95% (18/95) 4.07 0.0 0.0
GO:0030120 vesicle coat 10.53% (10/95) 6.29 0.0 0.0
GO:0032991 protein-containing complex 30.53% (29/95) 2.72 0.0 0.0
GO:0006810 transport 27.37% (26/95) 2.88 0.0 0.0
GO:0051234 establishment of localization 27.37% (26/95) 2.82 0.0 0.0
GO:0005575 cellular_component 56.84% (54/95) 1.51 0.0 0.0
GO:0051179 localization 27.37% (26/95) 2.77 0.0 0.0
GO:0030126 COPI vesicle coat 7.37% (7/95) 6.64 0.0 0.0
GO:0003674 molecular_function 66.32% (63/95) 0.91 0.0 0.0
GO:0008150 biological_process 56.84% (54/95) 1.03 0.0 0.0
GO:0048193 Golgi vesicle transport 7.37% (7/95) 4.53 0.0 1e-06
GO:0009987 cellular process 41.05% (39/95) 1.16 0.0 5e-06
GO:0008541 proteasome regulatory particle, lid subcomplex 3.16% (3/95) 7.84 0.0 6e-06
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 5.26% (5/95) 4.93 1e-06 1.4e-05
GO:0099023 vesicle tethering complex 5.26% (5/95) 4.69 2e-06 3e-05
GO:0006891 intra-Golgi vesicle-mediated transport 4.21% (4/95) 5.32 4e-06 5.9e-05
GO:0005515 protein binding 22.11% (21/95) 1.56 6e-06 9.6e-05
GO:0006417 regulation of translation 4.21% (4/95) 4.81 1.4e-05 0.000215
GO:0034248 regulation of amide metabolic process 4.21% (4/95) 4.81 1.4e-05 0.000215
GO:0110165 cellular anatomical entity 35.79% (34/95) 1.02 2e-05 0.000284
GO:0051246 regulation of protein metabolic process 5.26% (5/95) 3.84 3e-05 0.000421
GO:0005488 binding 40.0% (38/95) 0.83 0.000105 0.001433
GO:0017119 Golgi transport complex 2.11% (2/95) 6.71 0.000177 0.002363
GO:0010608 post-transcriptional regulation of gene expression 4.21% (4/95) 3.85 0.000188 0.002445
GO:0033218 amide binding 3.16% (3/95) 4.7 0.000229 0.00269
GO:0003724 RNA helicase activity 3.16% (3/95) 4.7 0.000226 0.002712
GO:0008186 ATP-dependent activity, acting on RNA 3.16% (3/95) 4.7 0.000226 0.002712
GO:0003729 mRNA binding 5.26% (5/95) 3.22 0.000215 0.002713
GO:0061608 nuclear import signal receptor activity 2.11% (2/95) 6.24 0.000337 0.003864
GO:0016579 protein deubiquitination 3.16% (3/95) 4.34 0.000467 0.005234
GO:0090110 COPII-coated vesicle cargo loading 2.11% (2/95) 5.78 0.000642 0.006876
GO:0035459 vesicle cargo loading 2.11% (2/95) 5.78 0.000642 0.006876
GO:0070646 protein modification by small protein removal 3.16% (3/95) 4.11 0.000751 0.007874
GO:0007029 endoplasmic reticulum organization 2.11% (2/95) 5.64 0.000774 0.007952
GO:0008139 nuclear localization sequence binding 2.11% (2/95) 5.59 0.000829 0.008345
GO:0030127 COPII vesicle coat 2.11% (2/95) 5.54 0.000886 0.00874
GO:0016757 glycosyltransferase activity 6.32% (6/95) 2.41 0.001004 0.009709
GO:0070971 endoplasmic reticulum exit site 2.11% (2/95) 5.39 0.001083 0.010264
GO:0003723 RNA binding 8.42% (8/95) 1.93 0.001231 0.011447
GO:0140142 nucleocytoplasmic carrier activity 2.11% (2/95) 5.2 0.001408 0.012858
GO:1990070 TRAPPI protein complex 1.05% (1/95) 9.17 0.001738 0.01477
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway 1.05% (1/95) 9.17 0.001738 0.01477
GO:0140535 intracellular protein-containing complex 5.26% (5/95) 2.55 0.001711 0.015059
GO:0070647 protein modification by small protein conjugation or removal 5.26% (5/95) 2.56 0.001685 0.0151
GO:0032469 endoplasmic reticulum calcium ion homeostasis 1.05% (1/95) 8.63 0.002526 0.021111
GO:0005048 signal sequence binding 2.11% (2/95) 4.59 0.003247 0.025411
GO:0048205 COPI coating of Golgi vesicle 1.05% (1/95) 8.31 0.003157 0.025515
GO:0048200 Golgi transport vesicle coating 1.05% (1/95) 8.31 0.003157 0.025515
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum 2.11% (2/95) 4.57 0.003332 0.025665
GO:0051603 proteolysis involved in protein catabolic process 4.21% (4/95) 2.73 0.003244 0.025793
GO:1990726 Lsm1-7-Pat1 complex 1.05% (1/95) 8.17 0.003472 0.026336
GO:0042277 peptide binding 2.11% (2/95) 4.47 0.003783 0.028255
GO:0070534 protein K63-linked ubiquitination 1.05% (1/95) 7.98 0.003945 0.029027
GO:0043687 post-translational protein modification 5.26% (5/95) 2.26 0.004091 0.029659
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding 2.11% (2/95) 4.38 0.004274 0.029676
GO:0043226 organelle 16.84% (16/95) 1.05 0.004218 0.029708
GO:0004827 proline-tRNA ligase activity 1.05% (1/95) 7.82 0.004417 0.029831
GO:0006433 prolyl-tRNA aminoacylation 1.05% (1/95) 7.82 0.004417 0.029831
GO:0140104 molecular carrier activity 2.11% (2/95) 4.33 0.004579 0.030101
GO:0043229 intracellular organelle 16.84% (16/95) 1.05 0.004214 0.030109
GO:0016020 membrane 13.68% (13/95) 1.19 0.004554 0.030342
GO:0031227 obsolete intrinsic component of endoplasmic reticulum membrane 1.05% (1/95) 7.54 0.005361 0.031465
GO:1990071 TRAPPII protein complex 1.05% (1/95) 7.54 0.005361 0.031465
GO:0009833 plant-type primary cell wall biogenesis 2.11% (2/95) 4.19 0.005554 0.031471
GO:0030132 clathrin coat of coated pit 1.05% (1/95) 7.5 0.005518 0.031635
GO:0030130 clathrin coat of trans-Golgi network vesicle 1.05% (1/95) 7.5 0.005518 0.031635
GO:0000145 exocyst 2.11% (2/95) 4.22 0.005279 0.03174
GO:0051170 import into nucleus 2.11% (2/95) 4.23 0.005249 0.031949
GO:0140098 catalytic activity, acting on RNA 5.26% (5/95) 2.18 0.005209 0.032099
GO:0071439 clathrin complex 1.05% (1/95) 7.34 0.006147 0.03224
GO:0032051 clathrin light chain binding 1.05% (1/95) 7.34 0.006147 0.03224
GO:1902936 phosphatidylinositol bisphosphate binding 2.11% (2/95) 4.27 0.004997 0.032413
GO:0019781 NEDD8 activating enzyme activity 1.05% (1/95) 7.58 0.005204 0.032475
GO:0006606 protein import into nucleus 2.11% (2/95) 4.24 0.005145 0.032516
GO:0034504 protein localization to nucleus 2.11% (2/95) 4.24 0.005145 0.032516
GO:1901981 phosphatidylinositol phosphate binding 2.11% (2/95) 4.15 0.005819 0.032599
GO:0006887 exocytosis 2.11% (2/95) 4.12 0.006106 0.032719
GO:0004386 helicase activity 3.16% (3/95) 3.04 0.006065 0.03286
GO:0006897 endocytosis 2.11% (2/95) 4.13 0.006009 0.032918
GO:0016759 cellulose synthase activity 2.11% (2/95) 4.13 0.005977 0.033111
GO:0043231 intracellular membrane-bounded organelle 14.74% (14/95) 1.07 0.006459 0.033518
GO:0043227 membrane-bounded organelle 14.74% (14/95) 1.06 0.006886 0.035362
GO:0008289 lipid binding 3.16% (3/95) 2.95 0.007113 0.036153
GO:0000502 proteasome complex 1.05% (1/95) 7.1 0.007247 0.036454
GO:0005794 Golgi apparatus 3.16% (3/95) 2.91 0.00772 0.036598
GO:0016050 vesicle organization 2.11% (2/95) 3.96 0.007492 0.036938
GO:0000026 alpha-1,2-mannosyltransferase activity 1.05% (1/95) 7.01 0.007717 0.036938
GO:0030243 cellulose metabolic process 2.11% (2/95) 3.94 0.00767 0.037074
GO:0004843 cysteine-type deubiquitinase activity 2.11% (2/95) 3.96 0.007475 0.037223
GO:0030244 cellulose biosynthetic process 2.11% (2/95) 3.95 0.007653 0.037354
GO:0016788 hydrolase activity, acting on ester bonds 6.32% (6/95) 1.79 0.00805 0.037795
GO:0032940 secretion by cell 2.11% (2/95) 3.88 0.008364 0.0389
GO:0016877 ligase activity, forming carbon-sulfur bonds 2.11% (2/95) 3.86 0.008532 0.039312
GO:0101005 deubiquitinase activity 2.11% (2/95) 3.84 0.008759 0.039982
GO:0046903 secretion 2.11% (2/95) 3.82 0.008988 0.040653
GO:0006511 ubiquitin-dependent protein catabolic process 3.16% (3/95) 2.8 0.009514 0.042641
GO:0098657 import into cell 2.11% (2/95) 3.75 0.009932 0.04372
GO:0004930 G protein-coupled receptor activity 1.05% (1/95) 6.65 0.009911 0.044021
GO:0045116 protein neddylation 1.05% (1/95) 6.58 0.010381 0.044119
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway 1.05% (1/95) 6.58 0.010381 0.044119
GO:1990072 TRAPPIII protein complex 1.05% (1/95) 6.58 0.010381 0.044119
GO:0035091 phosphatidylinositol binding 2.11% (2/95) 3.72 0.010297 0.044924
GO:0005262 calcium channel activity 1.05% (1/95) 6.52 0.01085 0.045332
GO:0047617 acyl-CoA hydrolase activity 1.05% (1/95) 6.52 0.01085 0.045332
GO:0006901 vesicle coating 1.05% (1/95) 6.48 0.011163 0.045861
GO:0009057 macromolecule catabolic process 4.21% (4/95) 2.22 0.011078 0.045893
GO:0009832 plant-type cell wall biogenesis 2.11% (2/95) 3.64 0.011513 0.046144
GO:0140352 export from cell 2.11% (2/95) 3.65 0.011341 0.046209
GO:0019783 ubiquitin-like protein peptidase activity 2.11% (2/95) 3.64 0.011491 0.046436
GO:0051273 beta-glucan metabolic process 2.11% (2/95) 3.61 0.011902 0.04657
GO:0051274 beta-glucan biosynthetic process 2.11% (2/95) 3.61 0.01188 0.046856
GO:0019941 modification-dependent protein catabolic process 3.16% (3/95) 2.66 0.012269 0.046888
GO:0005737 cytoplasm 8.42% (8/95) 1.39 0.011803 0.046924
GO:0005351 carbohydrate:proton symporter activity 1.05% (1/95) 6.34 0.012257 0.047208
GO:0005402 carbohydrate:monoatomic cation symporter activity 1.05% (1/95) 6.34 0.012257 0.047208
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (95) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms