Coexpression cluster: Cluster_38 (Co-expression clusters of Correr et al 2020 (PRJEB38368))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005575 cellular_component 49.53% (53/107) 1.31 0.0 0.0
GO:0110165 cellular anatomical entity 42.06% (45/107) 1.25 0.0 1e-06
GO:0016242 negative regulation of macroautophagy 2.8% (3/107) 9.29 0.0 2e-06
GO:0010507 negative regulation of autophagy 2.8% (3/107) 9.29 0.0 2e-06
GO:0031932 TORC2 complex 2.8% (3/107) 8.16 0.0 2.1e-05
GO:0065007 biological regulation 19.63% (21/107) 1.79 1e-06 5.1e-05
GO:0016241 regulation of macroautophagy 2.8% (3/107) 7.65 1e-06 5.2e-05
GO:0050794 regulation of cellular process 17.76% (19/107) 1.82 2e-06 7.7e-05
GO:0043226 organelle 23.36% (25/107) 1.52 1e-06 7.9e-05
GO:0003674 molecular_function 57.94% (62/107) 0.71 2e-06 8e-05
GO:0009895 negative regulation of catabolic process 2.8% (3/107) 7.15 1e-06 8.2e-05
GO:0031330 negative regulation of cellular catabolic process 2.8% (3/107) 7.27 1e-06 8.6e-05
GO:0043229 intracellular organelle 23.36% (25/107) 1.52 1e-06 8.8e-05
GO:0009892 negative regulation of metabolic process 6.54% (7/107) 3.42 5e-06 0.000125
GO:0031324 negative regulation of cellular metabolic process 6.54% (7/107) 3.43 5e-06 0.000126
GO:0043227 membrane-bounded organelle 20.56% (22/107) 1.54 5e-06 0.000128
GO:0031931 TORC1 complex 2.8% (3/107) 6.72 4e-06 0.000128
GO:0038201 TOR complex 2.8% (3/107) 6.72 4e-06 0.000128
GO:0008150 biological_process 48.6% (52/107) 0.8 4e-06 0.00013
GO:0031929 TOR signaling 2.8% (3/107) 6.61 5e-06 0.000131
GO:0031323 regulation of cellular metabolic process 14.02% (15/107) 2.03 4e-06 0.000133
GO:0043231 intracellular membrane-bounded organelle 20.56% (22/107) 1.55 4e-06 0.000136
GO:0050789 regulation of biological process 17.76% (19/107) 1.75 3e-06 0.000137
GO:0019222 regulation of metabolic process 14.02% (15/107) 1.99 6e-06 0.00014
GO:0005829 cytosol 9.35% (10/107) 2.72 3e-06 0.000143
GO:0033036 macromolecule localization 7.48% (8/107) 3.0 8e-06 0.000183
GO:0032991 protein-containing complex 15.89% (17/107) 1.78 9e-06 0.000184
GO:0070727 cellular macromolecule localization 7.48% (8/107) 3.0 8e-06 0.000187
GO:0008104 protein localization 7.48% (8/107) 3.0 8e-06 0.000191
GO:0005634 nucleus 14.02% (15/107) 1.92 1e-05 0.0002
GO:0010506 regulation of autophagy 2.8% (3/107) 6.09 1.3e-05 0.000258
GO:0036228 protein localization to nuclear inner membrane 1.87% (2/107) 8.41 1.7e-05 0.000303
GO:0090435 protein localization to nuclear envelope 1.87% (2/107) 8.41 1.7e-05 0.000303
GO:0048523 negative regulation of cellular process 6.54% (7/107) 3.05 2.5e-05 0.000442
GO:0072657 protein localization to membrane 3.74% (4/107) 4.56 2.8e-05 0.00048
GO:0048519 negative regulation of biological process 6.54% (7/107) 3.03 2.8e-05 0.00048
GO:0072594 establishment of protein localization to organelle 4.67% (5/107) 3.71 4.6e-05 0.000749
GO:0009987 cellular process 34.58% (37/107) 0.91 5.3e-05 0.000846
GO:0017056 structural constituent of nuclear pore 2.8% (3/107) 5.3 6.8e-05 0.001028
GO:0033365 protein localization to organelle 4.67% (5/107) 3.59 6.6e-05 0.00103
GO:0006099 tricarboxylic acid cycle 2.8% (3/107) 5.27 7.1e-05 0.001052
GO:0044611 nuclear pore inner ring 1.87% (2/107) 7.33 7.5e-05 0.001086
GO:0051668 localization within membrane 3.74% (4/107) 4.12 9.2e-05 0.001293
GO:0051641 cellular localization 7.48% (8/107) 2.5 9.6e-05 0.001328
GO:0005643 nuclear pore 2.8% (3/107) 4.98 0.000129 0.001732
GO:0006996 organelle organization 7.48% (8/107) 2.4 0.000149 0.001967
GO:0005488 binding 38.32% (41/107) 0.76 0.000176 0.002264
GO:0033962 P-body assembly 1.87% (2/107) 6.64 0.000196 0.002477
GO:0016781 phosphotransferase activity, paired acceptors 1.87% (2/107) 6.59 0.00021 0.002499
GO:0050242 pyruvate, phosphate dikinase activity 1.87% (2/107) 6.59 0.00021 0.002499
GO:0031329 regulation of cellular catabolic process 2.8% (3/107) 4.76 0.000203 0.002512
GO:0034504 protein localization to nucleus 2.8% (3/107) 4.66 0.000249 0.002795
GO:0006606 protein import into nucleus 2.8% (3/107) 4.66 0.000249 0.002795
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 1.87% (2/107) 6.43 0.000259 0.002808
GO:0051170 import into nucleus 2.8% (3/107) 4.64 0.000257 0.002828
GO:0008964 phosphoenolpyruvate carboxylase activity 1.87% (2/107) 6.48 0.000244 0.002841
GO:0016829 lyase activity 4.67% (5/107) 3.15 0.000274 0.002917
GO:0015977 carbon fixation 1.87% (2/107) 6.38 0.00028 0.002923
GO:0045184 establishment of protein localization 5.61% (6/107) 2.74 0.000301 0.003038
GO:0060255 regulation of macromolecule metabolic process 11.21% (12/107) 1.72 0.000296 0.003038
GO:0050657 nucleic acid transport 2.8% (3/107) 4.4 0.000421 0.003864
GO:0050658 RNA transport 2.8% (3/107) 4.4 0.000421 0.003864
GO:0051236 establishment of RNA localization 2.8% (3/107) 4.4 0.000421 0.003864
GO:0000972 transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery 1.87% (2/107) 6.12 0.000402 0.003994
GO:0006405 RNA export from nucleus 2.8% (3/107) 4.41 0.000409 0.003995
GO:0004611 phosphoenolpyruvate carboxykinase activity 1.87% (2/107) 6.09 0.000417 0.004011
GO:0003824 catalytic activity 31.78% (34/107) 0.81 0.000452 0.00409
GO:0048827 phyllome development 1.87% (2/107) 6.0 0.000469 0.004116
GO:0048366 leaf development 1.87% (2/107) 6.0 0.000469 0.004116
GO:0010468 regulation of gene expression 10.28% (11/107) 1.74 0.000489 0.004233
GO:0010556 regulation of macromolecule biosynthetic process 10.28% (11/107) 1.73 0.000517 0.004413
GO:0016043 cellular component organization 9.35% (10/107) 1.82 0.00057 0.004799
GO:0009889 regulation of biosynthetic process 10.28% (11/107) 1.7 0.000602 0.00493
GO:0031326 regulation of cellular biosynthetic process 10.28% (11/107) 1.7 0.000598 0.004967
GO:0110156 methylguanosine-cap decapping 1.87% (2/107) 5.57 0.000855 0.006906
GO:0110154 RNA decapping 1.87% (2/107) 5.5 0.000942 0.007514
GO:0005515 protein binding 16.82% (18/107) 1.17 0.000987 0.007767
GO:0010629 negative regulation of gene expression 3.74% (4/107) 3.19 0.001048 0.008041
GO:0006402 mRNA catabolic process 2.8% (3/107) 3.94 0.001045 0.008122
GO:0140513 nuclear protein-containing complex 6.54% (7/107) 2.13 0.001166 0.008832
GO:0017111 ribonucleoside triphosphate phosphatase activity 5.61% (6/107) 2.35 0.001259 0.009085
GO:0046507 UDPsulfoquinovose synthase activity 0.93% (1/107) 9.65 0.001246 0.009095
GO:0009894 regulation of catabolic process 2.8% (3/107) 3.86 0.00122 0.009129
GO:0008641 ubiquitin-like modifier activating enzyme activity 1.87% (2/107) 5.3 0.001238 0.009152
GO:0071840 cellular component organization or biogenesis 9.35% (10/107) 1.66 0.001297 0.009246
GO:0051168 nuclear export 2.8% (3/107) 3.8 0.001389 0.009791
GO:0015931 nucleobase-containing compound transport 2.8% (3/107) 3.77 0.001452 0.010116
GO:0006401 RNA catabolic process 2.8% (3/107) 3.7 0.001692 0.011651
GO:0016462 pyrophosphatase activity 5.61% (6/107) 2.25 0.001768 0.012039
GO:0005198 structural molecule activity 3.74% (4/107) 2.97 0.001813 0.012209
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 5.61% (6/107) 2.22 0.001925 0.01282
GO:0048046 apoplast 1.87% (2/107) 4.96 0.001968 0.012964
GO:0016817 hydrolase activity, acting on acid anhydrides 5.61% (6/107) 2.21 0.002018 0.013152
GO:0004655 porphobilinogen synthase activity 0.93% (1/107) 8.75 0.002312 0.014907
GO:0099402 plant organ development 1.87% (2/107) 4.8 0.00244 0.015565
GO:0004198 calcium-dependent cysteine-type endopeptidase activity 0.93% (1/107) 8.65 0.00249 0.015718
GO:0003723 RNA binding 7.48% (8/107) 1.76 0.00262 0.0162
GO:0010558 negative regulation of macromolecule biosynthetic process 3.74% (4/107) 2.82 0.002618 0.016358
GO:0006886 intracellular protein transport 3.74% (4/107) 2.8 0.00275 0.016833
GO:0031327 negative regulation of cellular biosynthetic process 3.74% (4/107) 2.78 0.002899 0.017393
GO:0140535 intracellular protein-containing complex 4.67% (5/107) 2.38 0.002875 0.01742
GO:0009890 negative regulation of biosynthetic process 3.74% (4/107) 2.77 0.002943 0.017486
GO:0051169 nuclear transport 2.8% (3/107) 3.37 0.003211 0.018356
GO:0006913 nucleocytoplasmic transport 2.8% (3/107) 3.37 0.003211 0.018356
GO:0000489 maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 0.93% (1/107) 8.29 0.0032 0.018648
GO:0000488 maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 0.93% (1/107) 8.29 0.0032 0.018648
GO:0046508 hydrolase activity, acting on carbon-sulfur bonds 0.93% (1/107) 8.21 0.003378 0.01913
GO:0004044 amidophosphoribosyltransferase activity 0.93% (1/107) 8.06 0.003733 0.020944
GO:0010605 negative regulation of macromolecule metabolic process 3.74% (4/107) 2.65 0.004006 0.022068
GO:0051179 localization 10.28% (11/107) 1.35 0.003988 0.022174
GO:0051013 microtubule severing 0.93% (1/107) 7.87 0.004265 0.022871
GO:0035639 purine ribonucleoside triphosphate binding 12.15% (13/107) 1.2 0.00435 0.022923
GO:0000932 P-body 1.87% (2/107) 4.39 0.004248 0.022985
GO:0009507 chloroplast 3.74% (4/107) 2.63 0.004226 0.023072
GO:0097159 organic cyclic compound binding 24.3% (26/107) 0.76 0.004341 0.023075
GO:0009536 plastid 3.74% (4/107) 2.59 0.004647 0.024071
GO:0120029 proton export across plasma membrane 0.93% (1/107) 7.75 0.004619 0.024132
GO:0008152 metabolic process 26.17% (28/107) 0.71 0.005031 0.025836
GO:0071704 organic substance metabolic process 25.23% (27/107) 0.72 0.005087 0.025903
GO:0061780 mitotic cohesin loading 0.93% (1/107) 7.46 0.005682 0.026693
GO:0071169 establishment of protein localization to chromatin 0.93% (1/107) 7.46 0.005682 0.026693
GO:0090694 Scc2-Scc4 cohesin loading complex 0.93% (1/107) 7.46 0.005682 0.026693
GO:0071168 protein localization to chromatin 0.93% (1/107) 7.46 0.005682 0.026693
GO:0071921 cohesin loading 0.93% (1/107) 7.46 0.005682 0.026693
GO:0034087 establishment of mitotic sister chromatid cohesion 0.93% (1/107) 7.46 0.005682 0.026693
GO:0070199 establishment of protein localization to chromosome 0.93% (1/107) 7.46 0.005682 0.026693
GO:0036464 cytoplasmic ribonucleoprotein granule 1.87% (2/107) 4.22 0.0053 0.026763
GO:0003682 chromatin binding 2.8% (3/107) 3.06 0.005782 0.026951
GO:0016787 hydrolase activity 12.15% (13/107) 1.15 0.005839 0.027012
GO:0099080 supramolecular complex 2.8% (3/107) 3.05 0.005916 0.027161
GO:0035770 ribonucleoprotein granule 1.87% (2/107) 4.2 0.005454 0.027314
GO:0016772 transferase activity, transferring phosphorus-containing groups 10.28% (11/107) 1.29 0.005586 0.027745
GO:0031510 SUMO activating enzyme complex 0.93% (1/107) 7.33 0.006213 0.027891
GO:0019948 SUMO activating enzyme activity 0.93% (1/107) 7.33 0.006213 0.027891
GO:0015031 protein transport 3.74% (4/107) 2.47 0.006204 0.028268
GO:0019827 stem cell population maintenance 0.93% (1/107) 7.1 0.007275 0.030403
GO:0010074 maintenance of meristem identity 0.93% (1/107) 7.1 0.007275 0.030403
GO:2000641 regulation of early endosome to late endosome transport 0.93% (1/107) 7.1 0.007275 0.030403
GO:0098727 maintenance of cell number 0.93% (1/107) 7.1 0.007275 0.030403
GO:0010078 maintenance of root meristem identity 0.93% (1/107) 7.1 0.007275 0.030403
GO:0010492 maintenance of shoot apical meristem identity 0.93% (1/107) 7.1 0.007275 0.030403
GO:0010071 root meristem specification 0.93% (1/107) 7.1 0.007275 0.030403
GO:0090421 embryonic meristem initiation 0.93% (1/107) 7.1 0.007275 0.030403
GO:0032116 SMC loading complex 0.93% (1/107) 7.06 0.007451 0.030718
GO:0071705 nitrogen compound transport 4.67% (5/107) 2.05 0.00742 0.0308
GO:0019001 guanyl nucleotide binding 2.8% (3/107) 2.91 0.007689 0.031062
GO:0032502 developmental process 2.8% (3/107) 2.91 0.007642 0.031081
GO:0016836 hydro-lyase activity 1.87% (2/107) 3.94 0.007762 0.03115
GO:0140694 non-membrane-bounded organelle assembly 1.87% (2/107) 3.95 0.007641 0.031285
GO:0032561 guanyl ribonucleotide binding 2.8% (3/107) 2.95 0.007088 0.031351
GO:0005525 GTP binding 2.8% (3/107) 2.95 0.007088 0.031351
GO:0044877 protein-containing complex binding 3.74% (4/107) 2.35 0.008188 0.032644
GO:0034502 protein localization to chromosome 0.93% (1/107) 6.9 0.008335 0.033012
GO:0016831 carboxy-lyase activity 1.87% (2/107) 3.85 0.008677 0.034144
GO:0010014 meristem initiation 0.93% (1/107) 6.78 0.009041 0.035347
GO:0016887 ATP hydrolysis activity 3.74% (4/107) 2.3 0.009244 0.035908
GO:0016050 vesicle organization 1.87% (2/107) 3.79 0.009415 0.036342
GO:0034655 nucleobase-containing compound catabolic process 2.8% (3/107) 2.8 0.009509 0.03647
GO:0046505 sulfolipid metabolic process 0.93% (1/107) 6.65 0.009923 0.037583
GO:0046506 sulfolipid biosynthetic process 0.93% (1/107) 6.65 0.009923 0.037583
GO:0016877 ligase activity, forming carbon-sulfur bonds 1.87% (2/107) 3.69 0.010714 0.040326
GO:0000956 nuclear-transcribed mRNA catabolic process 1.87% (2/107) 3.67 0.011044 0.041313
GO:0032012 regulation of ARF protein signal transduction 0.93% (1/107) 6.48 0.011156 0.041477
GO:0000785 chromatin 1.87% (2/107) 3.66 0.011235 0.041515
GO:0034085 establishment of sister chromatid cohesion 0.93% (1/107) 6.43 0.011509 0.042013
GO:0042393 histone binding 1.87% (2/107) 3.64 0.011451 0.042058
GO:0140603 obsolete ATP hydrolysis activity 0.93% (1/107) 6.41 0.011685 0.042148
GO:0032544 plastid translation 0.93% (1/107) 6.41 0.011685 0.042148
GO:0004839 ubiquitin activating enzyme activity 0.93% (1/107) 6.37 0.012037 0.042408
GO:0004594 pantothenate kinase activity 0.93% (1/107) 6.37 0.012037 0.042408
GO:0046700 heterocycle catabolic process 2.8% (3/107) 2.67 0.011991 0.042743
GO:0044270 cellular nitrogen compound catabolic process 2.8% (3/107) 2.67 0.011991 0.042743
GO:0016925 protein sumoylation 0.93% (1/107) 6.29 0.01274 0.044627
GO:0034062 5'-3' RNA polymerase activity 1.87% (2/107) 3.54 0.013119 0.04543
GO:0097747 RNA polymerase activity 1.87% (2/107) 3.54 0.013119 0.04543
GO:0032386 regulation of intracellular transport 0.93% (1/107) 6.19 0.013619 0.046627
GO:1990414 replication-born double-strand break repair via sister chromatid exchange 0.93% (1/107) 6.19 0.013619 0.046627
GO:0030350 iron-responsive element binding 0.93% (1/107) 6.17 0.013794 0.046963
GO:0006101 citrate metabolic process 0.93% (1/107) 6.15 0.01397 0.047296
GO:0003994 aconitate hydratase activity 0.93% (1/107) 6.13 0.014146 0.047624
GO:0030880 RNA polymerase complex 1.87% (2/107) 3.46 0.014455 0.048398
GO:0034058 endosomal vesicle fusion 0.93% (1/107) 6.08 0.014672 0.048854
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (107) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms