Coexpression cluster: Cluster_3809 (Co-expression clusters of Correr et al 2020 (PRJEB38368))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005575 cellular_component 35.32% (83/235) 0.82 0.0 3e-05
GO:0008150 biological_process 43.4% (102/235) 0.64 0.0 7e-05
GO:0110165 cellular anatomical entity 31.06% (73/235) 0.81 0.0 9.8e-05
GO:0009987 cellular process 32.34% (76/235) 0.81 0.0 0.000104
GO:0031090 organelle membrane 5.53% (13/235) 2.44 1e-06 0.00022
GO:0006725 cellular aromatic compound metabolic process 13.19% (31/235) 1.36 2e-06 0.000275
GO:1901360 organic cyclic compound metabolic process 13.19% (31/235) 1.32 3e-06 0.000424
GO:0016070 RNA metabolic process 8.09% (19/235) 1.74 6e-06 0.000702
GO:0006139 nucleobase-containing compound metabolic process 11.91% (28/235) 1.34 7e-06 0.000728
GO:0003674 molecular_function 48.94% (115/235) 0.47 1.3e-05 0.00123
GO:0090304 nucleic acid metabolic process 10.21% (24/235) 1.35 2.9e-05 0.00152
GO:0140640 catalytic activity, acting on a nucleic acid 6.81% (16/235) 1.76 2.8e-05 0.001551
GO:0140098 catalytic activity, acting on RNA 5.11% (12/235) 2.13 2.5e-05 0.001555
GO:0034641 cellular nitrogen compound metabolic process 12.34% (29/235) 1.21 2.7e-05 0.001572
GO:0046483 heterocycle metabolic process 11.91% (28/235) 1.24 2.4e-05 0.001617
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor 1.28% (3/235) 5.64 3.4e-05 0.001648
GO:1900865 chloroplast RNA modification 0.85% (2/235) 8.15 2.3e-05 0.001656
GO:0071702 organic substance transport 5.53% (13/235) 1.97 3.7e-05 0.001703
GO:0008131 primary amine oxidase activity 1.28% (3/235) 5.83 2.3e-05 0.001762
GO:0006807 nitrogen compound metabolic process 21.7% (51/235) 0.85 2.3e-05 0.001899
GO:0008028 monocarboxylic acid transmembrane transporter activity 1.28% (3/235) 5.5 4.4e-05 0.001965
GO:0031969 chloroplast membrane 1.7% (4/235) 4.31 5.6e-05 0.002381
GO:0048038 quinone binding 1.28% (3/235) 5.34 6.2e-05 0.0025
GO:0015245 fatty acid transmembrane transporter activity 0.85% (2/235) 7.23 8.5e-05 0.003145
GO:0006457 protein folding 2.55% (6/235) 3.1 8.4e-05 0.00325
GO:0009451 RNA modification 3.4% (8/235) 2.47 0.000123 0.004393
GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity 0.85% (2/235) 6.93 0.00013 0.00446
GO:0009658 chloroplast organization 1.7% (4/235) 3.93 0.000156 0.004978
GO:0006996 organelle organization 5.11% (12/235) 1.85 0.000155 0.005121
GO:0044237 cellular metabolic process 20.0% (47/235) 0.77 0.00018 0.005583
GO:0009657 plastid organization 1.7% (4/235) 3.84 0.000196 0.005864
GO:0008152 metabolic process 25.11% (59/235) 0.65 0.000238 0.006897
GO:0047623 adenosine-phosphate deaminase activity 0.85% (2/235) 6.44 0.000257 0.007007
GO:0003876 AMP deaminase activity 0.85% (2/235) 6.44 0.000257 0.007007
GO:0016831 carboxy-lyase activity 1.7% (4/235) 3.72 0.000272 0.007023
GO:0042170 plastid membrane 2.13% (5/235) 3.17 0.000269 0.007131
GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors 1.28% (3/235) 4.57 0.000297 0.007445
GO:0009308 amine metabolic process 1.7% (4/235) 3.65 0.000325 0.007529
GO:0032264 IMP salvage 0.85% (2/235) 6.28 0.000321 0.007645
GO:0106380 purine ribonucleotide salvage 0.85% (2/235) 6.28 0.000321 0.007645
GO:0071704 organic substance metabolic process 23.83% (56/235) 0.64 0.000399 0.008225
GO:0031968 organelle outer membrane 2.13% (5/235) 3.05 0.000391 0.008243
GO:0046033 AMP metabolic process 0.85% (2/235) 6.15 0.000382 0.008249
GO:0140662 ATP-dependent protein folding chaperone 1.7% (4/235) 3.6 0.000367 0.008301
GO:0016554 cytidine to uridine editing 0.85% (2/235) 6.09 0.000415 0.008366
GO:0071705 nitrogen compound transport 4.26% (10/235) 1.92 0.000382 0.008443
GO:0051082 unfolded protein binding 1.7% (4/235) 3.51 0.000465 0.009176
GO:0019867 outer membrane 2.13% (5/235) 2.98 0.000487 0.009409
GO:0044238 primary metabolic process 22.55% (53/235) 0.65 0.000524 0.009932
GO:0031123 RNA 3'-end processing 1.7% (4/235) 3.43 0.000576 0.010683
GO:0045037 protein import into chloroplast stroma 0.85% (2/235) 5.77 0.00065 0.01117
GO:0005829 cytosol 4.68% (11/235) 1.72 0.000615 0.011185
GO:0044183 protein folding chaperone 1.7% (4/235) 3.39 0.000629 0.011226
GO:0009507 chloroplast 2.98% (7/235) 2.3 0.000644 0.011272
GO:0009536 plastid 2.98% (7/235) 2.26 0.000753 0.012713
GO:0043226 organelle 14.47% (34/235) 0.83 0.000822 0.013388
GO:0043229 intracellular organelle 14.47% (34/235) 0.83 0.000821 0.013603
GO:0032261 purine nucleotide salvage 0.85% (2/235) 5.5 0.000936 0.014483
GO:0009706 chloroplast inner membrane 0.85% (2/235) 5.5 0.000936 0.014483
GO:0009528 plastid inner membrane 0.85% (2/235) 5.5 0.000936 0.014483
GO:0031359 obsolete integral component of chloroplast outer membrane 0.85% (2/235) 5.44 0.00102 0.01552
GO:0016553 base conversion or substitution editing 0.85% (2/235) 5.41 0.001055 0.015535
GO:0003824 catalytic activity 26.38% (62/235) 0.54 0.00105 0.015718
GO:0000454 snoRNA guided rRNA pseudouridine synthesis 0.43% (1/235) 9.74 0.001173 0.016743
GO:0008964 phosphoenolpyruvate carboxylase activity 0.85% (2/235) 5.34 0.001161 0.016841
GO:0005342 organic acid transmembrane transporter activity 1.7% (4/235) 3.13 0.001225 0.016963
GO:0046943 carboxylic acid transmembrane transporter activity 1.7% (4/235) 3.13 0.001225 0.016963
GO:0098588 bounding membrane of organelle 2.98% (7/235) 2.13 0.001244 0.016979
GO:0015977 carbon fixation 0.85% (2/235) 5.24 0.001331 0.017899
GO:0015908 fatty acid transport 0.85% (2/235) 5.23 0.00135 0.017902
GO:0051879 Hsp90 protein binding 0.85% (2/235) 5.18 0.00145 0.018953
GO:0016830 carbon-carbon lyase activity 1.7% (4/235) 3.04 0.001546 0.019922
GO:0043101 purine-containing compound salvage 0.85% (2/235) 5.08 0.00166 0.021096
GO:0035639 purine ribonucleoside triphosphate binding 10.21% (24/235) 0.95 0.001705 0.021099
GO:0043173 nucleotide salvage 0.85% (2/235) 5.06 0.001703 0.021357
GO:0019438 aromatic compound biosynthetic process 3.83% (9/235) 1.73 0.001845 0.022233
GO:0071840 cellular component organization or biogenesis 6.81% (16/235) 1.21 0.001839 0.022458
GO:0008514 organic anion transmembrane transporter activity 1.7% (4/235) 2.87 0.002349 0.02344
GO:0019239 deaminase activity 0.85% (2/235) 4.93 0.002047 0.023448
GO:0015718 monocarboxylic acid transport 0.85% (2/235) 4.93 0.002047 0.023448
GO:0004611 phosphoenolpyruvate carboxykinase activity 0.85% (2/235) 4.95 0.001976 0.023504
GO:0003723 RNA binding 5.53% (13/235) 1.33 0.002384 0.023536
GO:0006991 response to sterol depletion 0.43% (1/235) 8.74 0.002344 0.023645
GO:0032933 SREBP signaling pathway 0.43% (1/235) 8.74 0.002344 0.023645
GO:0006984 ER-nucleus signaling pathway 0.43% (1/235) 8.74 0.002344 0.023645
GO:0015485 cholesterol binding 0.43% (1/235) 8.74 0.002344 0.023645
GO:0071501 cellular response to sterol depletion 0.43% (1/235) 8.74 0.002344 0.023645
GO:0048366 leaf development 0.85% (2/235) 4.87 0.002217 0.023926
GO:0048827 phyllome development 0.85% (2/235) 4.87 0.002217 0.023926
GO:0046942 carboxylic acid transport 1.7% (4/235) 2.91 0.002145 0.023977
GO:0015849 organic acid transport 1.7% (4/235) 2.91 0.002145 0.023977
GO:0051254 positive regulation of RNA metabolic process 2.13% (5/235) 2.51 0.002046 0.024036
GO:0043231 intracellular membrane-bounded organelle 12.34% (29/235) 0.82 0.002287 0.024397
GO:0005789 endoplasmic reticulum membrane 1.7% (4/235) 2.9 0.002213 0.024451
GO:0005488 binding 30.64% (72/235) 0.44 0.002596 0.024833
GO:0043227 membrane-bounded organelle 12.34% (29/235) 0.8 0.002549 0.024902
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 2.13% (5/235) 2.43 0.00259 0.025032
GO:0007064 mitotic sister chromatid cohesion 0.85% (2/235) 4.74 0.002659 0.025176
GO:0034472 snRNA 3'-end processing 0.85% (2/235) 4.68 0.002851 0.026729
GO:1901566 organonitrogen compound biosynthetic process 3.83% (9/235) 1.62 0.002966 0.02752
GO:0005507 copper ion binding 1.28% (3/235) 3.41 0.003011 0.027663
GO:0015711 organic anion transport 1.7% (4/235) 2.76 0.003108 0.028274
GO:0005524 ATP binding 9.36% (22/235) 0.93 0.003221 0.028739
GO:0072596 establishment of protein localization to chloroplast 0.85% (2/235) 4.6 0.003197 0.028802
GO:0016180 snRNA processing 0.85% (2/235) 4.58 0.003286 0.029042
GO:0030124 AP-4 adaptor complex 0.43% (1/235) 8.15 0.003514 0.030477
GO:0034513 box H/ACA snoRNA binding 0.43% (1/235) 8.15 0.003514 0.030477
GO:0009058 biosynthetic process 7.23% (17/235) 1.07 0.003577 0.030735
GO:0006188 IMP biosynthetic process 0.85% (2/235) 4.49 0.003686 0.030817
GO:0009072 aromatic amino acid metabolic process 1.28% (3/235) 3.31 0.003668 0.030942
GO:1901362 organic cyclic compound biosynthetic process 3.83% (9/235) 1.58 0.003639 0.03098
GO:0008173 RNA methyltransferase activity 1.28% (3/235) 3.27 0.003895 0.032276
GO:0046040 IMP metabolic process 0.85% (2/235) 4.4 0.004208 0.034557
GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines 0.85% (2/235) 4.37 0.004378 0.034722
GO:0072598 protein localization to chloroplast 0.85% (2/235) 4.37 0.004343 0.034748
GO:0016043 cellular component organization 5.96% (14/235) 1.17 0.004318 0.034846
GO:0016020 membrane 10.64% (25/235) 0.82 0.004314 0.035114
GO:0034654 nucleobase-containing compound biosynthetic process 2.98% (7/235) 1.8 0.004467 0.035128
GO:0009662 etioplast organization 0.43% (1/235) 7.74 0.004683 0.036213
GO:0034477 U6 snRNA 3'-end processing 0.43% (1/235) 7.74 0.004683 0.036213
GO:0050779 RNA destabilization 0.85% (2/235) 4.29 0.004833 0.036766
GO:0061157 mRNA destabilization 0.85% (2/235) 4.29 0.004833 0.036766
GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 1.28% (3/235) 3.16 0.004892 0.036906
GO:0031331 positive regulation of cellular catabolic process 0.85% (2/235) 4.25 0.005088 0.03747
GO:0061014 positive regulation of mRNA catabolic process 0.85% (2/235) 4.25 0.005088 0.03747
GO:0043170 macromolecule metabolic process 16.6% (39/235) 0.61 0.005162 0.037722
GO:1901576 organic substance biosynthetic process 6.81% (16/235) 1.06 0.005053 0.037818
GO:0001650 fibrillar center 0.43% (1/235) 7.51 0.005461 0.039592
GO:0009126 purine nucleoside monophosphate metabolic process 0.85% (2/235) 4.15 0.005847 0.040795
GO:0009167 purine ribonucleoside monophosphate metabolic process 0.85% (2/235) 4.15 0.005847 0.040795
GO:0031325 positive regulation of cellular metabolic process 2.13% (5/235) 2.16 0.005694 0.040961
GO:0009127 purine nucleoside monophosphate biosynthetic process 0.85% (2/235) 4.16 0.005808 0.041141
GO:0009168 purine ribonucleoside monophosphate biosynthetic process 0.85% (2/235) 4.16 0.005808 0.041141
GO:0001510 RNA methylation 1.28% (3/235) 3.05 0.005975 0.041379
GO:0043488 regulation of mRNA stability 0.85% (2/235) 4.11 0.006204 0.042334
GO:0043094 cellular metabolic compound salvage 0.85% (2/235) 4.11 0.006204 0.042334
GO:0005741 mitochondrial outer membrane 0.85% (2/235) 4.09 0.006366 0.043123
GO:0061013 regulation of mRNA catabolic process 0.85% (2/235) 4.07 0.006489 0.043636
GO:0009527 plastid outer membrane 0.85% (2/235) 4.03 0.006864 0.045496
GO:0009707 chloroplast outer membrane 0.85% (2/235) 4.03 0.006864 0.045496
GO:0034470 ncRNA processing 2.55% (6/235) 1.83 0.00754 0.049277
GO:0043487 regulation of RNA stability 0.85% (2/235) 3.95 0.007598 0.049305
GO:0042026 protein refolding 0.85% (2/235) 3.96 0.007509 0.049424
GO:0031072 heat shock protein binding 0.85% (2/235) 3.93 0.00782 0.049705
GO:0004586 ornithine decarboxylase activity 0.43% (1/235) 7.0 0.007792 0.049871
GO:0033387 putrescine biosynthetic process from ornithine 0.43% (1/235) 7.0 0.007792 0.049871
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (235) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms