Coexpression cluster: Cluster_3566 (Co-expression clusters of Correr et al 2020 (PRJEB38368))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0043066 negative regulation of apoptotic process 2.15% (2/93) 11.07 0.0 0.000232
GO:0043069 negative regulation of programmed cell death 2.15% (2/93) 8.85 9e-06 0.001458
GO:1901576 organic substance biosynthetic process 13.98% (13/93) 2.09 1.1e-05 0.001459
GO:0042981 regulation of apoptotic process 2.15% (2/93) 9.27 5e-06 0.001621
GO:0008150 biological_process 49.46% (46/93) 0.83 8e-06 0.001725
GO:0009058 biosynthetic process 13.98% (13/93) 2.02 1.9e-05 0.002092
GO:0044281 small molecule metabolic process 10.75% (10/93) 2.18 7.7e-05 0.007148
GO:0043067 regulation of programmed cell death 2.15% (2/93) 7.2 9e-05 0.007339
GO:0044249 cellular biosynthetic process 11.83% (11/93) 1.97 0.000116 0.008421
GO:0005575 cellular_component 36.56% (34/93) 0.87 0.000156 0.010188
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain 2.15% (2/93) 6.32 0.000304 0.015272
GO:0051540 metal cluster binding 3.23% (3/93) 4.59 0.000282 0.015347
GO:0051536 iron-sulfur cluster binding 3.23% (3/93) 4.59 0.000282 0.015347
GO:0050821 protein stabilization 2.15% (2/93) 5.84 0.000584 0.016575
GO:0034243 regulation of transcription elongation by RNA polymerase II 2.15% (2/93) 5.84 0.000584 0.016575
GO:0008152 metabolic process 30.11% (28/93) 0.91 0.000509 0.016617
GO:0046185 aldehyde catabolic process 2.15% (2/93) 5.9 0.000538 0.016742
GO:0046961 proton-transporting ATPase activity, rotational mechanism 2.15% (2/93) 5.95 0.000504 0.017334
GO:0042625 ATPase-coupled ion transmembrane transporter activity 2.15% (2/93) 5.95 0.000504 0.017334
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism 2.15% (2/93) 5.95 0.000504 0.017334
GO:0033108 mitochondrial respiratory chain complex assembly 2.15% (2/93) 6.15 0.000383 0.017875
GO:0031647 regulation of protein stability 2.15% (2/93) 5.7 0.000714 0.019415
GO:0110165 cellular anatomical entity 32.26% (30/93) 0.87 0.000477 0.019477
GO:0006168 adenine salvage 1.08% (1/93) 11.07 0.000464 0.020209
GO:2001141 regulation of RNA biosynthetic process 8.6% (8/93) 1.88 0.001548 0.021056
GO:0006355 regulation of DNA-templated transcription 8.6% (8/93) 1.88 0.001548 0.021056
GO:0043933 protein-containing complex organization 5.38% (5/93) 2.58 0.001602 0.021344
GO:0016578 histone deubiquitination 1.08% (1/93) 9.34 0.001547 0.021954
GO:0015811 L-cystine transport 1.08% (1/93) 9.34 0.001547 0.021954
GO:0000101 sulfur amino acid transport 1.08% (1/93) 9.34 0.001547 0.021954
GO:0000099 sulfur amino acid transmembrane transporter activity 1.08% (1/93) 9.34 0.001547 0.021954
GO:0015184 L-cystine transmembrane transporter activity 1.08% (1/93) 9.34 0.001547 0.021954
GO:0003677 DNA binding 9.68% (9/93) 1.72 0.001729 0.022579
GO:0071819 DUBm complex 1.08% (1/93) 9.07 0.001856 0.022862
GO:0000703 oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity 1.08% (1/93) 9.07 0.001856 0.022862
GO:0015804 neutral amino acid transport 1.08% (1/93) 9.07 0.001856 0.022862
GO:0043227 membrane-bounded organelle 16.13% (15/93) 1.19 0.002188 0.023419
GO:0005829 cytosol 6.45% (6/93) 2.18 0.002169 0.023609
GO:0043231 intracellular membrane-bounded organelle 16.13% (15/93) 1.2 0.002034 0.023724
GO:0043226 organelle 18.28% (17/93) 1.16 0.001314 0.023826
GO:0016790 thiolester hydrolase activity 2.15% (2/93) 5.17 0.001461 0.023846
GO:0044237 cellular metabolic process 22.58% (21/93) 0.95 0.002267 0.023876
GO:0004416 hydroxyacylglutathione hydrolase activity 1.08% (1/93) 8.85 0.002164 0.023956
GO:0008654 phospholipid biosynthetic process 3.23% (3/93) 3.6 0.002027 0.024067
GO:0051252 regulation of RNA metabolic process 8.6% (8/93) 1.81 0.002111 0.024183
GO:1990351 transporter complex 2.15% (2/93) 4.89 0.002151 0.024214
GO:0051539 4 iron, 4 sulfur cluster binding 2.15% (2/93) 5.2 0.001413 0.02428
GO:0009060 aerobic respiration 2.15% (2/93) 5.18 0.001453 0.024323
GO:0032784 regulation of DNA-templated transcription elongation 2.15% (2/93) 4.94 0.002018 0.024397
GO:0015078 proton transmembrane transporter activity 3.23% (3/93) 3.96 0.001011 0.024453
GO:0043229 intracellular organelle 18.28% (17/93) 1.16 0.001312 0.024479
GO:0034553 mitochondrial respiratory chain complex II assembly 1.08% (1/93) 9.66 0.001237 0.024486
GO:0034552 respiratory chain complex II assembly 1.08% (1/93) 9.66 0.001237 0.024486
GO:0045333 cellular respiration 2.15% (2/93) 5.13 0.001542 0.02456
GO:0071704 organic substance metabolic process 27.96% (26/93) 0.87 0.001279 0.024561
GO:0043096 purine nucleobase salvage 1.08% (1/93) 9.49 0.001392 0.024567
GO:0001098 basal transcription machinery binding 2.15% (2/93) 5.35 0.001142 0.024868
GO:0001099 basal RNA polymerase II transcription machinery binding 2.15% (2/93) 5.35 0.001142 0.024868
GO:0009987 cellular process 32.26% (30/93) 0.81 0.000968 0.025287
GO:0043094 cellular metabolic compound salvage 2.15% (2/93) 5.44 0.001011 0.02539
GO:0008610 lipid biosynthetic process 5.38% (5/93) 2.67 0.00121 0.025481
GO:1901566 organonitrogen compound biosynthetic process 6.45% (6/93) 2.38 0.001113 0.025953
GO:0090407 organophosphate biosynthetic process 4.3% (4/93) 2.82 0.002611 0.027065
GO:0019219 regulation of nucleobase-containing compound metabolic process 8.6% (8/93) 1.75 0.002688 0.027424
GO:0042180 cellular ketone metabolic process 2.15% (2/93) 4.7 0.002767 0.027802
GO:0034719 SMN-Sm protein complex 1.08% (1/93) 8.41 0.002936 0.028619
GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity 1.08% (1/93) 8.41 0.002936 0.028619
GO:1902680 positive regulation of RNA biosynthetic process 3.23% (3/93) 3.36 0.003236 0.029349
GO:0045893 positive regulation of DNA-templated transcription 3.23% (3/93) 3.36 0.003236 0.029349
GO:0006081 cellular aldehyde metabolic process 2.15% (2/93) 4.61 0.003161 0.029489
GO:0003999 adenine phosphoribosyltransferase activity 1.08% (1/93) 8.34 0.003091 0.02968
GO:0005737 cytoplasm 9.68% (9/93) 1.59 0.003147 0.029787
GO:0015980 energy derivation by oxidation of organic compounds 2.15% (2/93) 4.56 0.003349 0.02996
GO:0004452 isopentenyl-diphosphate delta-isomerase activity 1.08% (1/93) 8.2 0.003399 0.029996
GO:0045272 plasma membrane respiratory chain complex I 1.08% (1/93) 8.13 0.003553 0.030939
GO:1902493 acetyltransferase complex 2.15% (2/93) 4.47 0.003779 0.032045
GO:0031248 protein acetyltransferase complex 2.15% (2/93) 4.47 0.003779 0.032045
GO:0032991 protein-containing complex 11.83% (11/93) 1.35 0.003846 0.032194
GO:0061522 1,4-dihydroxy-2-naphthoyl-CoA thioesterase activity 1.08% (1/93) 7.96 0.004016 0.033196
GO:0106130 purine phosphoribosyltransferase activity 1.08% (1/93) 7.9 0.00417 0.033619
GO:0001096 TFIIF-class transcription factor complex binding 1.08% (1/93) 7.9 0.00417 0.033619
GO:0098796 membrane protein complex 4.3% (4/93) 2.62 0.004248 0.033831
GO:0019637 organophosphate metabolic process 5.38% (5/93) 2.24 0.00431 0.033911
GO:0017009 protein-phycocyanobilin linkage 1.08% (1/93) 7.75 0.004633 0.035589
GO:0017007 protein-bilin linkage 1.08% (1/93) 7.75 0.004633 0.035589
GO:0098800 inner mitochondrial membrane protein complex 2.15% (2/93) 4.22 0.0053 0.035678
GO:0017006 protein-tetrapyrrole linkage 1.08% (1/93) 7.37 0.006018 0.035726
GO:0006654 phosphatidic acid biosynthetic process 1.08% (1/93) 7.37 0.006018 0.035726
GO:0004623 phospholipase A2 activity 1.08% (1/93) 7.37 0.006018 0.035726
GO:0046473 phosphatidic acid metabolic process 1.08% (1/93) 7.37 0.006018 0.035726
GO:0051254 positive regulation of RNA metabolic process 3.23% (3/93) 3.11 0.005269 0.035837
GO:0015807 L-amino acid transport 1.08% (1/93) 7.7 0.004787 0.035927
GO:0042776 proton motive force-driven mitochondrial ATP synthesis 1.08% (1/93) 7.7 0.004787 0.035927
GO:0044282 small molecule catabolic process 3.23% (3/93) 3.12 0.005128 0.036004
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 3.23% (3/93) 3.03 0.006127 0.036047
GO:0005674 transcription factor TFIIF complex 1.08% (1/93) 7.57 0.005249 0.036077
GO:0044238 primary metabolic process 24.73% (23/93) 0.78 0.005756 0.03614
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) 1.08% (1/93) 7.61 0.005095 0.03616
GO:0140647 P450-containing electron transport chain 1.08% (1/93) 7.61 0.005095 0.03616
GO:0006296 obsolete nucleotide-excision repair, DNA incision, 5'-to lesion 1.08% (1/93) 7.45 0.00571 0.036203
GO:1901615 organic hydroxy compound metabolic process 3.23% (3/93) 3.11 0.005223 0.036286
GO:0009891 positive regulation of biosynthetic process 3.23% (3/93) 3.07 0.005678 0.036351
GO:0010557 positive regulation of macromolecule biosynthetic process 3.23% (3/93) 3.07 0.005678 0.036351
GO:0031328 positive regulation of cellular biosynthetic process 3.23% (3/93) 3.07 0.005678 0.036351
GO:0005739 mitochondrion 4.3% (4/93) 2.55 0.005035 0.036534
GO:0044283 small molecule biosynthetic process 4.3% (4/93) 2.49 0.005906 0.03673
GO:0080090 regulation of primary metabolic process 8.6% (8/93) 1.56 0.005972 0.036788
GO:0044877 protein-containing complex binding 4.3% (4/93) 2.55 0.005019 0.036828
GO:0072349 modified amino acid transmembrane transporter activity 1.08% (1/93) 7.3 0.006326 0.036881
GO:0004596 peptide alpha-N-acetyltransferase activity 1.08% (1/93) 7.23 0.006633 0.037022
GO:0022900 electron transport chain 2.15% (2/93) 4.27 0.004994 0.037055
GO:0031417 NatC complex 1.08% (1/93) 7.27 0.00648 0.037115
GO:0072337 modified amino acid transport 1.08% (1/93) 7.27 0.00648 0.037115
GO:0003674 molecular_function 48.39% (45/93) 0.45 0.006611 0.037218
GO:0051171 regulation of nitrogen compound metabolic process 8.6% (8/93) 1.57 0.005652 0.037281
GO:0006091 generation of precursor metabolites and energy 3.23% (3/93) 3.08 0.005611 0.037386
GO:0009072 aromatic amino acid metabolic process 2.15% (2/93) 4.06 0.006591 0.037427
GO:0033180 proton-transporting V-type ATPase, V1 domain 1.08% (1/93) 7.2 0.006787 0.037559
GO:0046084 adenine biosynthetic process 1.08% (1/93) 7.17 0.006941 0.037769
GO:0046083 adenine metabolic process 1.08% (1/93) 7.17 0.006941 0.037769
GO:0010468 regulation of gene expression 8.6% (8/93) 1.48 0.008176 0.038135
GO:0046373 L-arabinose metabolic process 1.08% (1/93) 6.96 0.008016 0.038208
GO:0051596 methylglyoxal catabolic process 1.08% (1/93) 6.96 0.008016 0.038208
GO:0061727 methylglyoxal catabolic process to lactate 1.08% (1/93) 6.96 0.008016 0.038208
GO:0042182 ketone catabolic process 1.08% (1/93) 6.96 0.008016 0.038208
GO:0034715 pICln-Sm protein complex 1.08% (1/93) 6.96 0.008016 0.038208
GO:0019566 arabinose metabolic process 1.08% (1/93) 6.96 0.008016 0.038208
GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione 1.08% (1/93) 6.96 0.008016 0.038208
GO:0009438 methylglyoxal metabolic process 1.08% (1/93) 6.96 0.008016 0.038208
GO:0032044 DSIF complex 1.08% (1/93) 6.96 0.008016 0.038208
GO:1901362 organic cyclic compound biosynthetic process 5.38% (5/93) 2.07 0.007084 0.038232
GO:0016819 hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides 1.08% (1/93) 6.93 0.00817 0.03838
GO:0047627 adenylylsulfatase activity 1.08% (1/93) 6.93 0.00817 0.03838
GO:0005777 peroxisome 2.15% (2/93) 3.98 0.007294 0.038723
GO:0010230 alternative respiration 1.08% (1/93) 7.1 0.007248 0.038795
GO:0010556 regulation of macromolecule biosynthetic process 8.6% (8/93) 1.47 0.008497 0.038801
GO:0140673 transcription elongation-coupled chromatin remodeling 1.08% (1/93) 6.88 0.008477 0.038981
GO:1902600 proton transmembrane transport 2.15% (2/93) 3.87 0.008445 0.039109
GO:0042171 lysophosphatidic acid acyltransferase activity 1.08% (1/93) 7.04 0.007555 0.03947
GO:0009916 alternative oxidase activity 1.08% (1/93) 7.04 0.007555 0.03947
GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity 2.15% (2/93) 3.94 0.00771 0.039957
GO:0006285 base-excision repair, AP site formation 1.08% (1/93) 6.99 0.007863 0.040112
GO:0004834 tryptophan synthase activity 1.08% (1/93) 6.99 0.007863 0.040112
GO:0009889 regulation of biosynthetic process 8.6% (8/93) 1.44 0.009433 0.04026
GO:0016579 protein deubiquitination 2.15% (2/93) 3.79 0.00942 0.04047
GO:0000702 oxidized base lesion DNA N-glycosylase activity 1.08% (1/93) 6.8 0.008937 0.040527
GO:0004017 adenylate kinase activity 1.08% (1/93) 6.73 0.009397 0.040638
GO:0043102 amino acid salvage 1.08% (1/93) 6.73 0.009397 0.040638
GO:0019509 L-methionine salvage from methylthioadenosine 1.08% (1/93) 6.73 0.009397 0.040638
GO:0071267 L-methionine salvage 1.08% (1/93) 6.73 0.009397 0.040638
GO:0003838 sterol 24-C-methyltransferase activity 1.08% (1/93) 6.73 0.009397 0.040638
GO:0071265 L-methionine biosynthetic process 1.08% (1/93) 6.68 0.009704 0.041146
GO:0042646 plastid nucleoid 1.08% (1/93) 6.55 0.010623 0.041788
GO:0033179 proton-transporting V-type ATPase, V0 domain 1.08% (1/93) 6.55 0.010623 0.041788
GO:0042644 chloroplast nucleoid 1.08% (1/93) 6.55 0.010623 0.041788
GO:0000955 amino acid catabolic process via Ehrlich pathway 1.08% (1/93) 6.59 0.010317 0.041843
GO:0000947 amino acid catabolic process to alcohol via Ehrlich pathway 1.08% (1/93) 6.59 0.010317 0.041843
GO:0000949 aromatic amino acid family catabolic process to alcohol via Ehrlich pathway 1.08% (1/93) 6.59 0.010317 0.041843
GO:0004737 pyruvate decarboxylase activity 1.08% (1/93) 6.59 0.010317 0.041843
GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds 1.08% (1/93) 6.57 0.01047 0.041944
GO:0005687 U4 snRNP 1.08% (1/93) 6.57 0.01047 0.041944
GO:0031326 regulation of cellular biosynthetic process 8.6% (8/93) 1.44 0.009394 0.042015
GO:0006644 phospholipid metabolic process 3.23% (3/93) 2.81 0.009339 0.042056
GO:0006120 mitochondrial electron transport, NADH to ubiquinone 1.08% (1/93) 6.53 0.010776 0.042137
GO:0030042 actin filament depolymerization 1.08% (1/93) 6.64 0.01001 0.042172
GO:1901360 organic cyclic compound metabolic process 11.83% (11/93) 1.16 0.010259 0.042669
GO:0031325 positive regulation of cellular metabolic process 3.23% (3/93) 2.76 0.010206 0.042721
GO:0006656 phosphatidylcholine biosynthetic process 1.08% (1/93) 6.39 0.011847 0.04605
GO:0042371 vitamin K biosynthetic process 1.08% (1/93) 6.3 0.012612 0.047331
GO:0042373 vitamin K metabolic process 1.08% (1/93) 6.3 0.012612 0.047331
GO:0042374 phylloquinone metabolic process 1.08% (1/93) 6.3 0.012612 0.047331
GO:0042372 phylloquinone biosynthetic process 1.08% (1/93) 6.3 0.012612 0.047331
GO:0072348 sulfur compound transport 1.08% (1/93) 6.34 0.012306 0.04755
GO:1901617 organic hydroxy compound biosynthetic process 2.15% (2/93) 3.54 0.013138 0.047662
GO:0009725 response to hormone 2.15% (2/93) 3.54 0.013071 0.047684
GO:0016560 protein import into peroxisome matrix, docking 1.08% (1/93) 6.27 0.012918 0.047927
GO:0031414 N-terminal protein acetyltransferase complex 1.08% (1/93) 6.25 0.01307 0.047949
GO:0072521 purine-containing compound metabolic process 3.23% (3/93) 2.63 0.013004 0.047977
GO:0016829 lyase activity 3.23% (3/93) 2.62 0.013304 0.047996
GO:0070646 protein modification by small protein removal 2.15% (2/93) 3.55 0.012872 0.04803
GO:0098798 mitochondrial protein-containing complex 2.15% (2/93) 3.57 0.012586 0.048345
GO:0042362 fat-soluble vitamin biosynthetic process 1.08% (1/93) 6.18 0.013681 0.048819
GO:0006775 fat-soluble vitamin metabolic process 1.08% (1/93) 6.18 0.013681 0.048819
GO:0071617 lysophospholipid acyltransferase activity 1.08% (1/93) 6.13 0.014139 0.048851
GO:0065003 protein-containing complex assembly 3.23% (3/93) 2.58 0.014295 0.048872
GO:0048522 positive regulation of cellular process 3.23% (3/93) 2.58 0.014133 0.049088
GO:1990429 peroxisomal importomer complex 1.08% (1/93) 6.17 0.013834 0.049095
GO:0009739 response to gibberellin 1.08% (1/93) 6.12 0.014292 0.049119
GO:0044271 cellular nitrogen compound biosynthetic process 5.38% (5/93) 1.82 0.014018 0.049214
GO:0060255 regulation of macromolecule metabolic process 8.6% (8/93) 1.34 0.014104 0.049249
GO:0042579 microbody 2.15% (2/93) 3.46 0.014482 0.049253
GO:0031323 regulation of cellular metabolic process 8.6% (8/93) 1.33 0.014577 0.049319
GO:0009113 purine nucleobase biosynthetic process 1.08% (1/93) 6.15 0.013987 0.049369
GO:0006089 lactate metabolic process 1.08% (1/93) 6.07 0.014749 0.049392
GO:0051173 positive regulation of nitrogen compound metabolic process 3.23% (3/93) 2.56 0.014741 0.049617
GO:0009723 response to ethylene 1.08% (1/93) 6.06 0.014902 0.049648
GO:0046470 phosphatidylcholine metabolic process 1.08% (1/93) 6.04 0.015054 0.049649
GO:0005682 U5 snRNP 1.08% (1/93) 6.04 0.015054 0.049649
GO:0031090 organelle membrane 4.3% (4/93) 2.08 0.015358 0.049895
GO:0009893 positive regulation of metabolic process 3.23% (3/93) 2.54 0.015291 0.049924
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (93) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms