Coexpression cluster: Cluster_1617 (Co-expression clusters of Correr et al 2020 (PRJEB38368))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009654 photosystem II oxygen evolving complex 7.58% (5/66) 8.06 0.0 0.0
GO:0009523 photosystem II 7.58% (5/66) 7.78 0.0 0.0
GO:0006091 generation of precursor metabolites and energy 12.12% (8/66) 4.99 0.0 0.0
GO:0019898 extrinsic component of membrane 7.58% (5/66) 7.2 0.0 0.0
GO:0009521 photosystem 7.58% (5/66) 7.03 0.0 0.0
GO:0015979 photosynthesis 7.58% (5/66) 6.64 0.0 0.0
GO:0008883 glutamyl-tRNA reductase activity 4.55% (3/66) 10.28 0.0 0.0
GO:1990204 oxidoreductase complex 7.58% (5/66) 5.82 0.0 2e-06
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity 4.55% (3/66) 8.28 0.0 5e-06
GO:0003824 catalytic activity 45.45% (30/66) 1.33 0.0 9e-06
GO:0035194 regulatory ncRNA-mediated post-transcriptional gene silencing 6.06% (4/66) 6.25 0.0 9e-06
GO:0016441 post-transcriptional gene silencing 6.06% (4/66) 6.25 0.0 9e-06
GO:0022900 electron transport chain 6.06% (4/66) 5.76 1e-06 2.9e-05
GO:0009767 photosynthetic electron transport chain 4.55% (3/66) 7.16 1e-06 3.6e-05
GO:0009765 photosynthesis, light harvesting 4.55% (3/66) 6.81 3e-06 6.5e-05
GO:0009768 photosynthesis, light harvesting in photosystem I 4.55% (3/66) 6.81 3e-06 6.5e-05
GO:0031047 regulatory ncRNA-mediated gene silencing 6.06% (4/66) 5.35 3e-06 6.7e-05
GO:0005509 calcium ion binding 7.58% (5/66) 4.34 5e-06 0.000107
GO:0098796 membrane protein complex 9.09% (6/66) 3.7 7e-06 0.000137
GO:0140098 catalytic activity, acting on RNA 10.61% (7/66) 3.19 1.2e-05 0.000217
GO:0008150 biological_process 53.03% (35/66) 0.93 1.4e-05 0.00023
GO:0008152 metabolic process 37.88% (25/66) 1.24 1.5e-05 0.000237
GO:0033014 tetrapyrrole biosynthetic process 4.55% (3/66) 6.01 1.5e-05 0.000247
GO:0008253 5'-nucleotidase activity 3.03% (2/66) 8.02 2.9e-05 0.000419
GO:0004521 RNA endonuclease activity 6.06% (4/66) 4.44 3.8e-05 0.000494
GO:0033013 tetrapyrrole metabolic process 4.55% (3/66) 5.61 3.5e-05 0.000494
GO:0050661 NADP binding 4.55% (3/66) 5.58 3.8e-05 0.000508
GO:0010608 post-transcriptional regulation of gene expression 6.06% (4/66) 4.37 4.6e-05 0.000554
GO:0044237 cellular metabolic process 30.3% (20/66) 1.37 4.4e-05 0.000555
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 4.55% (3/66) 5.46 4.8e-05 0.000564
GO:0009055 electron transfer activity 4.55% (3/66) 5.44 5e-05 0.000567
GO:0016787 hydrolase activity 19.7% (13/66) 1.84 5.3e-05 0.000584
GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors 4.55% (3/66) 5.2 8.1e-05 0.000864
GO:0018130 heterocycle biosynthetic process 9.09% (6/66) 3.05 9.1e-05 0.000943
GO:0004540 RNA nuclease activity 6.06% (4/66) 4.05 0.000106 0.001041
GO:0004519 endonuclease activity 6.06% (4/66) 4.06 0.000105 0.001052
GO:0019438 aromatic compound biosynthetic process 9.09% (6/66) 2.98 0.00012 0.001139
GO:0009416 response to light stimulus 4.55% (3/66) 4.95 0.000136 0.001231
GO:0008252 nucleotidase activity 3.03% (2/66) 6.91 0.000133 0.001233
GO:0010629 negative regulation of gene expression 6.06% (4/66) 3.88 0.000167 0.001436
GO:0009987 cellular process 37.88% (25/66) 1.04 0.000163 0.001436
GO:0009314 response to radiation 4.55% (3/66) 4.83 0.000171 0.001437
GO:1901566 organonitrogen compound biosynthetic process 9.09% (6/66) 2.87 0.000176 0.001442
GO:0016788 hydrolase activity, acting on ester bonds 10.61% (7/66) 2.54 0.000204 0.001631
GO:1901362 organic cyclic compound biosynthetic process 9.09% (6/66) 2.83 0.000209 0.001631
GO:0008837 diaminopimelate epimerase activity 1.52% (1/66) 12.15 0.00022 0.001681
GO:0019363 pyridine nucleotide biosynthetic process 3.03% (2/66) 6.52 0.000231 0.001729
GO:0140640 catalytic activity, acting on a nucleic acid 10.61% (7/66) 2.4 0.000372 0.002728
GO:0016853 isomerase activity 6.06% (4/66) 3.57 0.000383 0.002752
GO:0072525 pyridine-containing compound biosynthetic process 3.03% (2/66) 6.08 0.00042 0.002958
GO:0010558 negative regulation of macromolecule biosynthetic process 6.06% (4/66) 3.52 0.000434 0.002995
GO:0009890 negative regulation of biosynthetic process 6.06% (4/66) 3.47 0.00049 0.003257
GO:0031327 negative regulation of cellular biosynthetic process 6.06% (4/66) 3.48 0.000483 0.003268
GO:0016491 oxidoreductase activity 12.12% (8/66) 2.12 0.000503 0.003281
GO:0044271 cellular nitrogen compound biosynthetic process 9.09% (6/66) 2.58 0.000514 0.003291
GO:0004518 nuclease activity 6.06% (4/66) 3.44 0.000536 0.003369
GO:0110165 cellular anatomical entity 34.85% (23/66) 0.98 0.000631 0.003896
GO:0008936 nicotinamidase activity 1.52% (1/66) 10.57 0.000659 0.003998
GO:0010605 negative regulation of macromolecule metabolic process 6.06% (4/66) 3.35 0.000678 0.004046
GO:0031324 negative regulation of cellular metabolic process 6.06% (4/66) 3.32 0.00072 0.004223
GO:0009892 negative regulation of metabolic process 6.06% (4/66) 3.31 0.000735 0.004239
GO:0044249 cellular biosynthetic process 12.12% (8/66) 2.01 0.000821 0.00466
GO:0003674 molecular_function 54.55% (36/66) 0.63 0.001105 0.006173
GO:0009628 response to abiotic stimulus 4.55% (3/66) 3.89 0.001148 0.006314
GO:1901576 organic substance biosynthetic process 12.12% (8/66) 1.89 0.001402 0.007591
GO:0005575 cellular_component 36.36% (24/66) 0.86 0.001486 0.007928
GO:0004343 glucosamine 6-phosphate N-acetyltransferase activity 1.52% (1/66) 9.35 0.001537 0.007954
GO:0072380 TRC complex 1.52% (1/66) 9.35 0.001537 0.007954
GO:0140101 catalytic activity, acting on a tRNA 4.55% (3/66) 3.64 0.001849 0.009434
GO:0048523 negative regulation of cellular process 6.06% (4/66) 2.94 0.001889 0.009497
GO:0009058 biosynthetic process 12.12% (8/66) 1.81 0.001939 0.009615
GO:0048519 negative regulation of biological process 6.06% (4/66) 2.92 0.002014 0.009845
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 3.03% (2/66) 4.92 0.00206 0.009931
GO:0047661 amino-acid racemase activity 1.52% (1/66) 8.83 0.002194 0.010438
GO:0004751 ribose-5-phosphate isomerase activity 1.52% (1/66) 8.63 0.002523 0.011842
GO:0036361 racemase activity, acting on amino acids and derivatives 1.52% (1/66) 8.45 0.002852 0.013208
GO:0016859 cis-trans isomerase activity 3.03% (2/66) 4.65 0.002954 0.013505
GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives 1.52% (1/66) 8.02 0.003837 0.017316
GO:0004364 glutathione transferase activity 3.03% (2/66) 4.41 0.004111 0.018317
GO:1902494 catalytic complex 7.58% (5/66) 2.21 0.004625 0.020351
GO:0055035 plastid thylakoid membrane 3.03% (2/66) 4.29 0.004806 0.02063
GO:0009535 chloroplast thylakoid membrane 3.03% (2/66) 4.29 0.004806 0.02063
GO:0006741 NADP biosynthetic process 1.52% (1/66) 7.66 0.004931 0.02091
GO:0003951 NAD+ kinase activity 1.52% (1/66) 7.63 0.00504 0.021119
GO:0098807 chloroplast thylakoid membrane protein complex 1.52% (1/66) 7.6 0.005149 0.021324
GO:0009052 pentose-phosphate shunt, non-oxidative branch 1.52% (1/66) 7.57 0.005258 0.021523
GO:0005737 cytoplasm 10.61% (7/66) 1.72 0.005325 0.021546
GO:0019365 pyridine nucleotide salvage 1.52% (1/66) 7.42 0.005805 0.022209
GO:0003959 NADPH dehydrogenase activity 1.52% (1/66) 7.42 0.005805 0.022209
GO:0006749 glutathione metabolic process 3.03% (2/66) 4.17 0.00568 0.022215
GO:0042651 thylakoid membrane 3.03% (2/66) 4.17 0.005648 0.022336
GO:0034357 photosynthetic membrane 3.03% (2/66) 4.17 0.005648 0.022336
GO:0072379 ER membrane insertion complex 1.52% (1/66) 7.25 0.006569 0.024862
GO:0016791 phosphatase activity 4.55% (3/66) 2.95 0.007015 0.02627
GO:0009507 chloroplast 4.55% (3/66) 2.91 0.007645 0.028325
GO:0009536 plastid 4.55% (3/66) 2.87 0.008228 0.030171
GO:0006620 post-translational protein targeting to endoplasmic reticulum membrane 1.52% (1/66) 6.81 0.008858 0.032144
GO:0055086 nucleobase-containing small molecule metabolic process 4.55% (3/66) 2.74 0.010565 0.037948
GO:0032991 protein-containing complex 12.12% (8/66) 1.39 0.011063 0.038179
GO:0046349 amino sugar biosynthetic process 1.52% (1/66) 6.49 0.011033 0.038452
GO:0006048 UDP-N-acetylglucosamine biosynthetic process 1.52% (1/66) 6.49 0.011033 0.038452
GO:0019362 pyridine nucleotide metabolic process 3.03% (2/66) 3.65 0.011252 0.038455
GO:0042170 plastid membrane 3.03% (2/66) 3.68 0.010857 0.038604
GO:0005801 cis-Golgi network 1.52% (1/66) 6.4 0.011793 0.039915
GO:0072524 pyridine-containing compound metabolic process 3.03% (2/66) 3.58 0.012306 0.040864
GO:0006047 UDP-N-acetylglucosamine metabolic process 1.52% (1/66) 6.35 0.012227 0.040991
GO:0031968 organelle outer membrane 3.03% (2/66) 3.56 0.012692 0.041753
GO:0019682 glyceraldehyde-3-phosphate metabolic process 1.52% (1/66) 6.15 0.013962 0.044679
GO:0019867 outer membrane 3.03% (2/66) 3.49 0.013914 0.044935
GO:0042578 phosphoric ester hydrolase activity 4.55% (3/66) 2.59 0.013848 0.045136
GO:0030008 TRAPP complex 1.52% (1/66) 6.08 0.01472 0.04668
GO:0003723 RNA binding 7.58% (5/66) 1.78 0.01527 0.047149
GO:0046451 diaminopimelate metabolic process 1.52% (1/66) 5.98 0.015694 0.047215
GO:0009089 lysine biosynthetic process via diaminopimelate 1.52% (1/66) 5.98 0.015694 0.047215
GO:0009165 nucleotide biosynthetic process 3.03% (2/66) 3.42 0.015169 0.047253
GO:1901293 nucleoside phosphate biosynthetic process 3.03% (2/66) 3.42 0.015169 0.047253
GO:0046872 metal ion binding 9.09% (6/66) 1.57 0.015487 0.047405
GO:0010287 plastoglobule 1.52% (1/66) 5.91 0.01645 0.049072
GO:0043173 nucleotide salvage 1.52% (1/66) 5.9 0.016667 0.049299
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups 3.03% (2/66) 3.34 0.01698 0.049807
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (66) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms