Coexpression cluster: Cluster_789 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0022857 transmembrane transporter activity 30.0% (18/60) 3.5 0.0 0.0
GO:0005215 transporter activity 30.0% (18/60) 3.43 0.0 0.0
GO:0015179 L-amino acid transmembrane transporter activity 10.0% (6/60) 7.57 0.0 0.0
GO:0030288 outer membrane-bounded periplasmic space 6.67% (4/60) 10.54 0.0 0.0
GO:0042597 periplasmic space 6.67% (4/60) 10.08 0.0 0.0
GO:0003333 amino acid transmembrane transport 10.0% (6/60) 6.28 0.0 0.0
GO:0055085 transmembrane transport 21.67% (13/60) 3.42 0.0 0.0
GO:1903825 organic acid transmembrane transport 10.0% (6/60) 6.04 0.0 0.0
GO:1905039 carboxylic acid transmembrane transport 10.0% (6/60) 6.04 0.0 0.0
GO:0015075 monoatomic ion transmembrane transporter activity 15.0% (9/60) 4.28 0.0 0.0
GO:0006865 amino acid transport 10.0% (6/60) 5.78 0.0 0.0
GO:0015171 amino acid transmembrane transporter activity 10.0% (6/60) 5.8 0.0 0.0
GO:0005342 organic acid transmembrane transporter activity 10.0% (6/60) 5.69 0.0 0.0
GO:0046943 carboxylic acid transmembrane transporter activity 10.0% (6/60) 5.69 0.0 0.0
GO:0015849 organic acid transport 10.0% (6/60) 5.46 0.0 0.0
GO:0046942 carboxylic acid transport 10.0% (6/60) 5.46 0.0 0.0
GO:0008514 organic anion transmembrane transporter activity 10.0% (6/60) 5.43 0.0 0.0
GO:0046873 metal ion transmembrane transporter activity 11.67% (7/60) 4.81 0.0 0.0
GO:0015711 organic anion transport 10.0% (6/60) 5.31 0.0 0.0
GO:1901702 salt transmembrane transporter activity 11.67% (7/60) 4.64 0.0 0.0
GO:0005388 P-type calcium transporter activity 6.67% (4/60) 6.89 0.0 1e-06
GO:0022890 inorganic cation transmembrane transporter activity 11.67% (7/60) 4.34 0.0 1e-06
GO:0008324 monoatomic cation transmembrane transporter activity 11.67% (7/60) 4.2 0.0 1e-06
GO:0006810 transport 21.67% (13/60) 2.55 0.0 3e-06
GO:0015318 inorganic molecular entity transmembrane transporter activity 11.67% (7/60) 4.04 0.0 3e-06
GO:0015662 P-type ion transporter activity 6.67% (4/60) 6.06 0.0 4e-06
GO:0140358 P-type transmembrane transporter activity 6.67% (4/60) 6.06 0.0 4e-06
GO:0015085 calcium ion transmembrane transporter activity 6.67% (4/60) 6.08 0.0 4e-06
GO:0051234 establishment of localization 21.67% (13/60) 2.48 0.0 4e-06
GO:0022853 active monoatomic ion transmembrane transporter activity 8.33% (5/60) 5.0 1e-06 5e-06
GO:0051179 localization 21.67% (13/60) 2.43 1e-06 5e-06
GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity 6.67% (4/60) 5.57 2e-06 1.4e-05
GO:0015969 guanosine tetraphosphate metabolic process 3.33% (2/60) 8.48 1.5e-05 0.000116
GO:0034035 purine ribonucleoside bisphosphate metabolic process 3.33% (2/60) 8.46 1.6e-05 0.000117
GO:0071702 organic substance transport 11.67% (7/60) 3.05 2.2e-05 0.000163
GO:0004175 endopeptidase activity 8.33% (5/60) 3.75 3.7e-05 0.000265
GO:0071705 nitrogen compound transport 10.0% (6/60) 3.15 6e-05 0.000414
GO:0098655 monoatomic cation transmembrane transport 6.67% (4/60) 4.17 7.8e-05 0.000523
GO:0071805 potassium ion transmembrane transport 5.0% (3/60) 5.16 8.8e-05 0.000574
GO:0098662 inorganic cation transmembrane transport 6.67% (4/60) 4.11 9e-05 0.000574
GO:0034220 monoatomic ion transmembrane transport 6.67% (4/60) 4.1 9.2e-05 0.000574
GO:0030001 metal ion transport 6.67% (4/60) 4.02 0.000115 0.000696
GO:0098660 inorganic ion transmembrane transport 6.67% (4/60) 4.01 0.000118 0.000701
GO:0015079 potassium ion transmembrane transporter activity 5.0% (3/60) 4.92 0.000143 0.000832
GO:0006813 potassium ion transport 5.0% (3/60) 4.88 0.000155 0.00088
GO:0022804 active transmembrane transporter activity 8.33% (5/60) 3.15 0.000257 0.001424
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 5.0% (3/60) 4.52 0.000324 0.001757
GO:0042626 ATPase-coupled transmembrane transporter activity 6.67% (4/60) 3.59 0.000355 0.001849
GO:0006812 monoatomic cation transport 6.67% (4/60) 3.6 0.000352 0.001868
GO:0000987 cis-regulatory region sequence-specific DNA binding 5.0% (3/60) 4.43 0.000389 0.001982
GO:0015399 primary active transmembrane transporter activity 6.67% (4/60) 3.49 0.00046 0.002299
GO:0038023 signaling receptor activity 5.0% (3/60) 4.25 0.000554 0.002717
GO:0008233 peptidase activity 8.33% (5/60) 2.89 0.000591 0.002792
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 5.0% (3/60) 4.2 0.000615 0.0028
GO:0006811 monoatomic ion transport 6.67% (4/60) 3.4 0.000585 0.002814
GO:0060089 molecular transducer activity 5.0% (3/60) 4.2 0.000612 0.002836
GO:0009987 cellular process 36.67% (22/60) 0.99 0.000664 0.002969
GO:0015276 ligand-gated monoatomic ion channel activity 3.33% (2/60) 5.41 0.001057 0.004569
GO:0022834 ligand-gated channel activity 3.33% (2/60) 5.41 0.001057 0.004569
GO:0008150 biological_process 46.67% (28/60) 0.75 0.001426 0.006061
GO:0007165 signal transduction 8.33% (5/60) 2.54 0.001696 0.007089
GO:0065007 biological regulation 16.67% (10/60) 1.55 0.001936 0.007963
GO:0017171 serine hydrolase activity 5.0% (3/60) 3.55 0.002207 0.008794
GO:0008236 serine-type peptidase activity 5.0% (3/60) 3.55 0.002207 0.008794
GO:0033875 ribonucleoside bisphosphate metabolic process 3.33% (2/60) 4.7 0.00277 0.01009
GO:0034032 purine nucleoside bisphosphate metabolic process 3.33% (2/60) 4.7 0.00277 0.01009
GO:0033865 nucleoside bisphosphate metabolic process 3.33% (2/60) 4.7 0.00277 0.01009
GO:0061522 1,4-dihydroxy-2-naphthoyl-CoA thioesterase activity 1.67% (1/60) 8.59 0.002593 0.010172
GO:0001067 transcription regulatory region nucleic acid binding 5.0% (3/60) 3.45 0.00268 0.010202
GO:0000976 transcription cis-regulatory region binding 5.0% (3/60) 3.45 0.00268 0.010202
GO:0050794 regulation of cellular process 15.0% (9/60) 1.57 0.003006 0.010795
GO:1990837 sequence-specific double-stranded DNA binding 5.0% (3/60) 3.34 0.003308 0.011555
GO:0003674 molecular_function 53.33% (32/60) 0.59 0.003278 0.01161
GO:0140657 ATP-dependent activity 8.33% (5/60) 2.26 0.003894 0.013417
GO:0050789 regulation of biological process 15.0% (9/60) 1.5 0.004159 0.01414
GO:0016787 hydrolase activity 15.0% (9/60) 1.45 0.005215 0.017498
GO:0022836 gated channel activity 3.33% (2/60) 4.21 0.005321 0.017621
GO:0110165 cellular anatomical entity 31.67% (19/60) 0.84 0.006069 0.01984
GO:0006423 cysteinyl-tRNA aminoacylation 1.67% (1/60) 7.29 0.00637 0.020055
GO:0004817 cysteine-tRNA ligase activity 1.67% (1/60) 7.29 0.00637 0.020055
GO:0043467 regulation of generation of precursor metabolites and energy 1.67% (1/60) 7.25 0.006569 0.020181
GO:0042548 regulation of photosynthesis, light reaction 1.67% (1/60) 7.25 0.006569 0.020181
GO:0004930 G protein-coupled receptor activity 1.67% (1/60) 7.31 0.006271 0.020242
GO:0006357 regulation of transcription by RNA polymerase II 5.0% (3/60) 2.91 0.007522 0.022833
GO:0042371 vitamin K biosynthetic process 1.67% (1/60) 6.93 0.008155 0.023365
GO:0042373 vitamin K metabolic process 1.67% (1/60) 6.93 0.008155 0.023365
GO:0042374 phylloquinone metabolic process 1.67% (1/60) 6.93 0.008155 0.023365
GO:0042372 phylloquinone biosynthetic process 1.67% (1/60) 6.93 0.008155 0.023365
GO:0010109 regulation of photosynthesis 1.67% (1/60) 6.97 0.007957 0.02387
GO:0005216 monoatomic ion channel activity 3.33% (2/60) 3.86 0.008528 0.024162
GO:0042362 fat-soluble vitamin biosynthetic process 1.67% (1/60) 6.81 0.008848 0.024524
GO:0006775 fat-soluble vitamin metabolic process 1.67% (1/60) 6.81 0.008848 0.024524
GO:0016020 membrane 15.0% (9/60) 1.32 0.009377 0.02571
GO:0003690 double-stranded DNA binding 5.0% (3/60) 2.77 0.009933 0.026945
GO:0006508 proteolysis 6.67% (4/60) 2.23 0.010452 0.028057
GO:0016887 ATP hydrolysis activity 5.0% (3/60) 2.72 0.010865 0.028861
GO:0022803 passive transmembrane transporter activity 3.33% (2/60) 3.49 0.013971 0.036352
GO:0015267 channel activity 3.33% (2/60) 3.49 0.013971 0.036352
GO:0016289 CoA hydrolase activity 1.67% (1/60) 5.68 0.019384 0.047988
GO:0015081 sodium ion transmembrane transporter activity 1.67% (1/60) 5.68 0.019286 0.048214
GO:0035725 sodium ion transmembrane transport 1.67% (1/60) 5.69 0.019188 0.048444
GO:0015385 sodium:proton antiporter activity 1.67% (1/60) 5.7 0.01909 0.048678
GO:0098719 sodium ion import across plasma membrane 1.67% (1/60) 5.7 0.018992 0.048918
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (60) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms