Coexpression cluster: Cluster_4674 (Co-expression clusters of Correr et al 2020 (PRJEB38368))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005575 cellular_component 40.0% (44/110) 1.0 1e-06 0.00064
GO:0110165 cellular anatomical entity 36.36% (40/110) 1.04 2e-06 0.000648
GO:1901259 chloroplast rRNA processing 2.73% (3/110) 6.66 4e-06 0.000726
GO:0043226 organelle 20.0% (22/110) 1.29 7.2e-05 0.00642
GO:0043229 intracellular organelle 20.0% (22/110) 1.29 7.2e-05 0.007693
GO:0006396 RNA processing 7.27% (8/110) 2.59 6.1e-05 0.008154
GO:0043227 membrane-bounded organelle 17.27% (19/110) 1.29 0.000252 0.010379
GO:0019867 outer membrane 3.64% (4/110) 3.75 0.000243 0.010837
GO:0042170 plastid membrane 3.64% (4/110) 3.94 0.000148 0.011307
GO:1901360 organic cyclic compound metabolic process 14.55% (16/110) 1.46 0.000232 0.011319
GO:0043231 intracellular membrane-bounded organelle 17.27% (19/110) 1.3 0.000229 0.012271
GO:0045036 protein targeting to chloroplast 1.82% (2/110) 6.55 0.000222 0.013235
GO:0031968 organelle outer membrane 3.64% (4/110) 3.82 0.000202 0.013522
GO:0046483 heterocycle metabolic process 13.64% (15/110) 1.44 0.000422 0.016175
GO:0016869 intramolecular aminotransferase activity 0.91% (1/110) 10.83 0.000549 0.016349
GO:0042286 glutamate-1-semialdehyde 2,1-aminomutase activity 0.91% (1/110) 10.83 0.000549 0.016349
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 3.64% (4/110) 3.39 0.00062 0.016603
GO:0061650 ubiquitin-like protein conjugating enzyme activity 1.82% (2/110) 5.84 0.000589 0.016616
GO:0072596 establishment of protein localization to chloroplast 1.82% (2/110) 5.69 0.000717 0.016719
GO:0008170 N-methyltransferase activity 2.73% (3/110) 4.34 0.000473 0.0169
GO:0055035 plastid thylakoid membrane 2.73% (3/110) 4.14 0.000705 0.017173
GO:0009535 chloroplast thylakoid membrane 2.73% (3/110) 4.14 0.000705 0.017173
GO:0034641 cellular nitrogen compound metabolic process 13.64% (15/110) 1.35 0.000782 0.017467
GO:0034357 photosynthetic membrane 2.73% (3/110) 4.02 0.000896 0.017789
GO:0042651 thylakoid membrane 2.73% (3/110) 4.02 0.000896 0.017789
GO:0006725 cellular aromatic compound metabolic process 13.64% (15/110) 1.4 0.000536 0.017957
GO:0072598 protein localization to chloroplast 1.82% (2/110) 5.47 0.00098 0.018106
GO:0006364 rRNA processing 3.64% (4/110) 3.22 0.000966 0.01849
GO:0005737 cytoplasm 10.0% (11/110) 1.63 0.000882 0.018905
GO:0018160 peptidyl-pyrromethane cofactor linkage 0.91% (1/110) 9.83 0.001098 0.019614
GO:0003674 molecular_function 50.0% (55/110) 0.5 0.001137 0.019651
GO:0043539 protein serine/threonine kinase activator activity 1.82% (2/110) 5.25 0.001326 0.020905
GO:0016072 rRNA metabolic process 3.64% (4/110) 3.1 0.001288 0.020921
GO:0009918 sterol delta7 reductase activity 0.91% (1/110) 9.61 0.001281 0.021451
GO:0016070 RNA metabolic process 8.18% (9/110) 1.75 0.001497 0.022289
GO:0090304 nucleic acid metabolic process 10.91% (12/110) 1.45 0.00154 0.022307
GO:0052856 NADHX epimerase activity 0.91% (1/110) 9.42 0.001463 0.022412
GO:0000375 RNA splicing, via transesterification reactions 2.73% (3/110) 3.6 0.002063 0.026968
GO:0006139 nucleobase-containing compound metabolic process 11.82% (13/110) 1.33 0.002019 0.02706
GO:0019209 kinase activator activity 1.82% (2/110) 4.94 0.002011 0.02764
GO:0030295 protein kinase activator activity 1.82% (2/110) 4.94 0.002011 0.02764
GO:0005634 nucleus 10.0% (11/110) 1.44 0.0026 0.0303
GO:0016751 S-succinyltransferase activity 0.91% (1/110) 8.61 0.00256 0.030489
GO:0004418 hydroxymethylbilane synthase activity 0.91% (1/110) 8.61 0.00256 0.030489
GO:0004149 dihydrolipoyllysine-residue succinyltransferase activity 0.91% (1/110) 8.61 0.00256 0.030489
GO:0016748 succinyltransferase activity 0.91% (1/110) 8.61 0.00256 0.030489
GO:0033014 tetrapyrrole biosynthetic process 1.82% (2/110) 4.69 0.002831 0.032286
GO:0003723 RNA binding 7.27% (8/110) 1.72 0.003109 0.034008
GO:0008380 RNA splicing 2.73% (3/110) 3.37 0.003232 0.03465
GO:0061656 SUMO conjugating enzyme activity 0.91% (1/110) 8.33 0.003107 0.034699
GO:0003729 mRNA binding 3.64% (4/110) 2.69 0.003607 0.037907
GO:0008168 methyltransferase activity 3.64% (4/110) 2.64 0.004095 0.042206
GO:0009408 response to heat 1.82% (2/110) 4.35 0.004483 0.044495
GO:0006457 protein folding 2.73% (3/110) 3.2 0.004465 0.045157
GO:0016741 transferase activity, transferring one-carbon groups 3.64% (4/110) 2.58 0.004719 0.045993
GO:0033013 tetrapyrrole metabolic process 1.82% (2/110) 4.29 0.004845 0.046376
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (110) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms