Coexpression cluster: Cluster_3863 (Co-expression clusters of Correr et al 2020 (PRJEB38368))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003674 molecular_function 64.75% (79/122) 0.87 0.0 0.0
GO:0005488 binding 50.0% (61/122) 1.15 0.0 0.0
GO:0005575 cellular_component 40.98% (50/122) 1.04 0.0 2.1e-05
GO:0097159 organic cyclic compound binding 31.97% (39/122) 1.15 1e-06 0.000106
GO:0009987 cellular process 36.89% (45/122) 1.0 1e-06 0.000161
GO:0008150 biological_process 46.72% (57/122) 0.75 7e-06 0.000559
GO:0004157 dihydropyrimidinase activity 1.64% (2/122) 9.1 6e-06 0.000588
GO:0008152 metabolic process 31.97% (39/122) 0.99 1e-05 0.000604
GO:0006807 nitrogen compound metabolic process 27.05% (33/122) 1.16 6e-06 0.000615
GO:0003743 translation initiation factor activity 3.28% (4/122) 5.01 9e-06 0.000623
GO:1901575 organic substance catabolic process 9.02% (11/122) 2.39 1e-05 0.000639
GO:0110165 cellular anatomical entity 33.61% (41/122) 0.93 1.7e-05 0.000799
GO:0009056 catabolic process 9.02% (11/122) 2.31 1.5e-05 0.000843
GO:0006139 nucleobase-containing compound metabolic process 14.75% (18/122) 1.65 1.7e-05 0.00086
GO:0071704 organic substance metabolic process 30.33% (37/122) 0.99 2.1e-05 0.000917
GO:0035639 purine ribonucleoside triphosphate binding 15.57% (19/122) 1.56 2.4e-05 0.000969
GO:0032991 protein-containing complex 13.93% (17/122) 1.59 5e-05 0.001277
GO:0008135 translation factor activity, RNA binding 3.28% (4/122) 4.35 5e-05 0.001321
GO:0090079 translation regulator activity, nucleic acid binding 3.28% (4/122) 4.35 5e-05 0.001321
GO:0044238 primary metabolic process 28.69% (35/122) 1.0 3.4e-05 0.001337
GO:0006208 pyrimidine nucleobase catabolic process 1.64% (2/122) 7.84 3.7e-05 0.001344
GO:0044237 cellular metabolic process 24.59% (30/122) 1.07 6e-05 0.001361
GO:0006725 cellular aromatic compound metabolic process 14.75% (18/122) 1.52 5.6e-05 0.001369
GO:0046483 heterocycle metabolic process 14.75% (18/122) 1.55 4.2e-05 0.001376
GO:0003676 nucleic acid binding 17.21% (21/122) 1.39 4.6e-05 0.001391
GO:1901564 organonitrogen compound metabolic process 19.67% (24/122) 1.25 6e-05 0.001404
GO:0044248 cellular catabolic process 6.56% (8/122) 2.68 4.1e-05 0.001406
GO:0072529 pyrimidine-containing compound catabolic process 1.64% (2/122) 7.62 5e-05 0.001426
GO:0016070 RNA metabolic process 9.84% (12/122) 2.02 4.6e-05 0.001432
GO:1901360 organic cyclic compound metabolic process 14.75% (18/122) 1.48 8.1e-05 0.001721
GO:0046113 nucleobase catabolic process 1.64% (2/122) 7.24 8.4e-05 0.001736
GO:0034641 cellular nitrogen compound metabolic process 14.75% (18/122) 1.46 9e-05 0.001737
GO:0003723 RNA binding 9.02% (11/122) 2.03 8.8e-05 0.001758
GO:0045182 translation regulator activity 3.28% (4/122) 4.17 8.1e-05 0.001777
GO:0046033 AMP metabolic process 1.64% (2/122) 7.1 0.000104 0.001844
GO:0005515 protein binding 18.03% (22/122) 1.27 0.000103 0.001886
GO:0043167 ion binding 22.13% (27/122) 1.1 0.000102 0.00192
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides 1.64% (2/122) 6.89 0.000138 0.002387
GO:0000932 P-body 2.46% (3/122) 4.78 0.000194 0.003111
GO:1901265 nucleoside phosphate binding 17.21% (21/122) 1.24 0.00019 0.003134
GO:0000166 nucleotide binding 17.21% (21/122) 1.24 0.00019 0.003134
GO:0044270 cellular nitrogen compound catabolic process 4.1% (5/122) 3.22 0.000221 0.00339
GO:0046700 heterocycle catabolic process 4.1% (5/122) 3.22 0.000221 0.00339
GO:0043168 anion binding 17.21% (21/122) 1.22 0.000241 0.003616
GO:1901363 heterocyclic compound binding 17.21% (21/122) 1.2 0.000275 0.003937
GO:0035770 ribonucleoprotein granule 2.46% (3/122) 4.6 0.000282 0.003957
GO:0036464 cytoplasmic ribonucleoprotein granule 2.46% (3/122) 4.62 0.00027 0.003958
GO:0036094 small molecule binding 17.21% (21/122) 1.19 0.000301 0.004128
GO:0016787 hydrolase activity 13.93% (17/122) 1.35 0.000375 0.005047
GO:1901361 organic cyclic compound catabolic process 4.1% (5/122) 3.03 0.00041 0.005397
GO:0032555 purine ribonucleotide binding 15.57% (19/122) 1.22 0.000487 0.006298
GO:0032553 ribonucleotide binding 15.57% (19/122) 1.21 0.000538 0.006824
GO:0005634 nucleus 10.66% (13/122) 1.53 0.000614 0.00723
GO:0005737 cytoplasm 9.84% (12/122) 1.61 0.000609 0.007298
GO:0097367 carbohydrate derivative binding 15.57% (19/122) 1.2 0.00059 0.007336
GO:0043170 macromolecule metabolic process 21.31% (26/122) 0.97 0.000608 0.007418
GO:0003729 mRNA binding 4.1% (5/122) 2.86 0.000678 0.007835
GO:0140662 ATP-dependent protein folding chaperone 2.46% (3/122) 4.13 0.000715 0.007851
GO:0003824 catalytic activity 30.33% (37/122) 0.74 0.00071 0.007934
GO:0044281 small molecule metabolic process 8.2% (10/122) 1.79 0.000703 0.007992
GO:0017076 purine nucleotide binding 15.57% (19/122) 1.16 0.000774 0.008364
GO:0009057 macromolecule catabolic process 4.92% (6/122) 2.44 0.000901 0.008604
GO:0031593 polyubiquitin modification-dependent protein binding 1.64% (2/122) 5.52 0.000914 0.008606
GO:0030015 CCR4-NOT core complex 1.64% (2/122) 5.54 0.000889 0.008617
GO:0043226 organelle 17.21% (21/122) 1.08 0.000867 0.008661
GO:0000956 nuclear-transcribed mRNA catabolic process 2.46% (3/122) 4.06 0.00082 0.008711
GO:0043933 protein-containing complex organization 4.92% (6/122) 2.45 0.000888 0.008736
GO:0099080 supramolecular complex 3.28% (4/122) 3.28 0.000837 0.008755
GO:0043229 intracellular organelle 17.21% (21/122) 1.08 0.000866 0.008783
GO:0140535 intracellular protein-containing complex 4.92% (6/122) 2.46 0.000859 0.008847
GO:0005524 ATP binding 12.3% (15/122) 1.32 0.001024 0.009506
GO:0005525 GTP binding 3.28% (4/122) 3.18 0.001067 0.009635
GO:0032561 guanyl ribonucleotide binding 3.28% (4/122) 3.18 0.001067 0.009635
GO:0044183 protein folding chaperone 2.46% (3/122) 3.92 0.001082 0.009639
GO:0046040 IMP metabolic process 1.64% (2/122) 5.34 0.001164 0.010228
GO:0019001 guanyl nucleotide binding 3.28% (4/122) 3.14 0.001191 0.010325
GO:0090304 nucleic acid metabolic process 10.66% (13/122) 1.41 0.001245 0.010656
GO:0140030 modification-dependent protein binding 1.64% (2/122) 5.24 0.00134 0.011322
GO:0018738 S-formylglutathione hydrolase activity 0.82% (1/122) 9.46 0.00142 0.011848
GO:0006402 mRNA catabolic process 2.46% (3/122) 3.75 0.001524 0.012552
GO:0009126 purine nucleoside monophosphate metabolic process 1.64% (2/122) 5.1 0.001626 0.01261
GO:0009167 purine ribonucleoside monophosphate metabolic process 1.64% (2/122) 5.1 0.001626 0.01261
GO:0009127 purine nucleoside monophosphate biosynthetic process 1.64% (2/122) 5.1 0.001615 0.012826
GO:0009168 purine ribonucleoside monophosphate biosynthetic process 1.64% (2/122) 5.1 0.001615 0.012826
GO:0055086 nucleobase-containing small molecule metabolic process 4.1% (5/122) 2.59 0.001584 0.012886
GO:0010629 negative regulation of gene expression 3.28% (4/122) 3.0 0.0017 0.013023
GO:0022618 protein-RNA complex assembly 2.46% (3/122) 3.66 0.001834 0.013889
GO:0005829 cytosol 5.74% (7/122) 2.02 0.001873 0.01403
GO:0004630 phospholipase D activity 1.64% (2/122) 4.98 0.001903 0.014093
GO:0071826 protein-RNA complex organization 2.46% (3/122) 3.61 0.001998 0.014626
GO:0043231 intracellular membrane-bounded organelle 14.75% (18/122) 1.07 0.002178 0.015774
GO:0006206 pyrimidine nucleobase metabolic process 1.64% (2/122) 4.86 0.002239 0.016042
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 2.46% (3/122) 3.54 0.002301 0.016302
GO:0043227 membrane-bounded organelle 14.75% (18/122) 1.06 0.002363 0.016563
GO:0006401 RNA catabolic process 2.46% (3/122) 3.51 0.002457 0.016692
GO:0009161 ribonucleoside monophosphate metabolic process 1.64% (2/122) 4.8 0.002438 0.016733
GO:0009156 ribonucleoside monophosphate biosynthetic process 1.64% (2/122) 4.8 0.002424 0.016815
GO:1901565 organonitrogen compound catabolic process 4.1% (5/122) 2.42 0.002636 0.017725
GO:0009123 nucleoside monophosphate metabolic process 1.64% (2/122) 4.71 0.002757 0.018166
GO:0009124 nucleoside monophosphate biosynthetic process 1.64% (2/122) 4.71 0.002742 0.018255
GO:0004812 aminoacyl-tRNA ligase activity 2.46% (3/122) 3.43 0.002876 0.018402
GO:0016875 ligase activity, forming carbon-oxygen bonds 2.46% (3/122) 3.43 0.002876 0.018402
GO:0006418 tRNA aminoacylation for protein translation 2.46% (3/122) 3.43 0.002853 0.018613
GO:0043039 tRNA aminoacylation 2.46% (3/122) 3.4 0.003031 0.019206
GO:0004019 adenylosuccinate synthase activity 0.82% (1/122) 8.27 0.003243 0.019609
GO:0006167 AMP biosynthetic process 0.82% (1/122) 8.27 0.003243 0.019609
GO:0001097 TFIIH-class transcription factor complex binding 0.82% (1/122) 8.27 0.003243 0.019609
GO:0044208 'de novo' AMP biosynthetic process 0.82% (1/122) 8.27 0.003243 0.019609
GO:0043038 amino acid activation 2.46% (3/122) 3.35 0.003318 0.019875
GO:0000212 meiotic spindle organization 0.82% (1/122) 8.18 0.003446 0.020095
GO:0022607 cellular component assembly 4.1% (5/122) 2.35 0.003207 0.020126
GO:0071840 cellular component organization or biogenesis 8.2% (10/122) 1.47 0.003425 0.020153
GO:0009395 phospholipid catabolic process 1.64% (2/122) 4.55 0.003419 0.020296
GO:0004160 dihydroxy-acid dehydratase activity 0.82% (1/122) 7.94 0.004053 0.023427
GO:0010558 negative regulation of macromolecule biosynthetic process 3.28% (4/122) 2.63 0.004188 0.023996
GO:0006612 protein targeting to membrane 1.64% (2/122) 4.37 0.00434 0.024654
GO:0065003 protein-containing complex assembly 3.28% (4/122) 2.6 0.004525 0.025485
GO:0031327 negative regulation of cellular biosynthetic process 3.28% (4/122) 2.59 0.004628 0.025845
GO:0009112 nucleobase metabolic process 1.64% (2/122) 4.31 0.004737 0.026013
GO:0009890 negative regulation of biosynthetic process 3.28% (4/122) 2.58 0.004697 0.026013
GO:0005673 transcription factor TFIIE complex 0.82% (1/122) 7.68 0.004861 0.026475
GO:0034657 GID complex 0.82% (1/122) 7.62 0.005063 0.02735
GO:0006338 chromatin remodeling 2.46% (3/122) 3.11 0.005314 0.028242
GO:0016043 cellular component organization 7.38% (9/122) 1.48 0.005305 0.028422
GO:0140657 ATP-dependent activity 5.74% (7/122) 1.73 0.005612 0.029587
GO:0016071 mRNA metabolic process 3.28% (4/122) 2.51 0.005679 0.029701
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 2.46% (3/122) 3.05 0.005895 0.03059
GO:0006457 protein folding 2.46% (3/122) 3.05 0.00595 0.030632
GO:0010605 negative regulation of macromolecule metabolic process 3.28% (4/122) 2.46 0.006357 0.032475
GO:0006325 chromatin organization 2.46% (3/122) 2.98 0.006727 0.03384
GO:0031324 negative regulation of cellular metabolic process 3.28% (4/122) 2.44 0.006718 0.034058
GO:0015245 fatty acid transmembrane transporter activity 0.82% (1/122) 7.18 0.00688 0.034088
GO:0009892 negative regulation of metabolic process 3.28% (4/122) 2.43 0.006846 0.034179
GO:0072527 pyrimidine-containing compound metabolic process 1.64% (2/122) 3.97 0.007385 0.036318
GO:0010498 proteasomal protein catabolic process 2.46% (3/122) 2.92 0.007646 0.037325
GO:0098727 maintenance of cell number 0.82% (1/122) 6.91 0.00829 0.037678
GO:0010071 root meristem specification 0.82% (1/122) 6.91 0.00829 0.037678
GO:0090421 embryonic meristem initiation 0.82% (1/122) 6.91 0.00829 0.037678
GO:0010492 maintenance of shoot apical meristem identity 0.82% (1/122) 6.91 0.00829 0.037678
GO:0010074 maintenance of meristem identity 0.82% (1/122) 6.91 0.00829 0.037678
GO:0019827 stem cell population maintenance 0.82% (1/122) 6.91 0.00829 0.037678
GO:0010078 maintenance of root meristem identity 0.82% (1/122) 6.91 0.00829 0.037678
GO:0070150 mitochondrial glycyl-tRNA aminoacylation 0.82% (1/122) 6.94 0.008089 0.038628
GO:0000070 mitotic sister chromatid segregation 0.82% (1/122) 6.94 0.008089 0.038628
GO:0034660 ncRNA metabolic process 4.1% (5/122) 2.03 0.008031 0.038917
GO:0016874 ligase activity 3.28% (4/122) 2.32 0.008791 0.039682
GO:0006796 phosphate-containing compound metabolic process 9.84% (12/122) 1.13 0.008862 0.03973
GO:0140096 catalytic activity, acting on a protein 11.48% (14/122) 1.02 0.009062 0.040352
GO:0071818 BAT3 complex 0.82% (1/122) 6.74 0.009297 0.040843
GO:0006793 phosphorus metabolic process 9.84% (12/122) 1.13 0.009251 0.040915
GO:0090150 establishment of protein localization to membrane 1.64% (2/122) 3.78 0.009571 0.041769
GO:0030163 protein catabolic process 2.46% (3/122) 2.79 0.009637 0.041783
GO:0070127 tRNA aminoacylation for mitochondrial protein translation 0.82% (1/122) 6.62 0.010101 0.043507
GO:0032559 adenyl ribonucleotide binding 12.3% (15/122) 0.96 0.010326 0.043619
GO:0010014 meristem initiation 0.82% (1/122) 6.59 0.010302 0.0438
GO:0140101 catalytic activity, acting on a tRNA 2.46% (3/122) 2.76 0.010269 0.043944
GO:0071007 U2-type catalytic step 2 spliceosome 0.82% (1/122) 6.54 0.010704 0.044364
GO:0043614 multi-eIF complex 0.82% (1/122) 6.54 0.010704 0.044364
GO:0071540 eukaryotic translation initiation factor 3 complex, eIF3e 0.82% (1/122) 6.54 0.010704 0.044364
GO:0003876 AMP deaminase activity 0.82% (1/122) 6.38 0.011908 0.048743
GO:0047623 adenosine-phosphate deaminase activity 0.82% (1/122) 6.38 0.011908 0.048743
GO:0140640 catalytic activity, acting on a nucleic acid 5.74% (7/122) 1.51 0.012157 0.048852
GO:0002188 translation reinitiation 0.82% (1/122) 6.36 0.012109 0.048956
GO:0072379 ER membrane insertion complex 0.82% (1/122) 6.36 0.012109 0.048956
GO:0071824 protein-DNA complex organization 2.46% (3/122) 2.66 0.012362 0.049077
GO:0005851 eukaryotic translation initiation factor 2B complex 0.82% (1/122) 6.34 0.01231 0.049164
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (122) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms