Coexpression cluster: Cluster_2211 (Co-expression clusters of Correr et al 2020 (PRJEB38368))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0032991 protein-containing complex 24.14% (21/87) 2.38 0.0 0.0
GO:0140513 nuclear protein-containing complex 11.49% (10/87) 2.95 1e-06 0.000213
GO:0006807 nitrogen compound metabolic process 29.89% (26/87) 1.31 8e-06 0.001429
GO:0043170 macromolecule metabolic process 27.59% (24/87) 1.34 1.3e-05 0.001481
GO:0004576 oligosaccharyl transferase activity 2.3% (2/87) 8.17 2.3e-05 0.001629
GO:0016071 mRNA metabolic process 6.9% (6/87) 3.58 1.2e-05 0.001747
GO:0036396 RNA N6-methyladenosine methyltransferase complex 2.3% (2/87) 8.2 2.2e-05 0.001784
GO:0045293 mRNA editing complex 2.3% (2/87) 8.2 2.2e-05 0.001784
GO:0080009 mRNA methylation 2.3% (2/87) 7.92 3.3e-05 0.002047
GO:0009987 cellular process 36.78% (32/87) 1.0 4.2e-05 0.002149
GO:0044238 primary metabolic process 31.03% (27/87) 1.11 5.9e-05 0.002217
GO:0008150 biological_process 48.28% (42/87) 0.8 4e-05 0.002254
GO:0031261 DNA replication preinitiation complex 2.3% (2/87) 7.51 5.9e-05 0.002346
GO:0034641 cellular nitrogen compound metabolic process 17.24% (15/87) 1.69 5.6e-05 0.002395
GO:0006139 nucleobase-containing compound metabolic process 16.09% (14/87) 1.78 5.4e-05 0.002509
GO:0005575 cellular_component 37.93% (33/87) 0.92 8.5e-05 0.002652
GO:0030532 small nuclear ribonucleoprotein complex 3.45% (3/87) 5.2 8.1e-05 0.002679
GO:0097525 spliceosomal snRNP complex 3.45% (3/87) 5.21 8.1e-05 0.002832
GO:0046483 heterocycle metabolic process 16.09% (14/87) 1.68 0.000112 0.003124
GO:0120114 Sm-like protein family complex 3.45% (3/87) 5.07 0.000107 0.003156
GO:0043414 macromolecule methylation 4.6% (4/87) 3.95 0.000144 0.003675
GO:0006725 cellular aromatic compound metabolic process 16.09% (14/87) 1.64 0.000142 0.003781
GO:1990234 transferase complex 6.9% (6/87) 2.89 0.000169 0.003945
GO:0090304 nucleic acid metabolic process 13.79% (12/87) 1.79 0.00018 0.004041
GO:0071704 organic substance metabolic process 31.03% (27/87) 1.02 0.000168 0.004089
GO:1901360 organic cyclic compound metabolic process 16.09% (14/87) 1.6 0.000191 0.004118
GO:0045292 mRNA cis splicing, via spliceosome 2.3% (2/87) 6.5 0.000238 0.004926
GO:0003674 molecular_function 54.02% (47/87) 0.61 0.000282 0.005273
GO:0006397 mRNA processing 4.6% (4/87) 3.7 0.000278 0.005372
GO:0016070 RNA metabolic process 10.34% (9/87) 2.09 0.000271 0.005429
GO:0001056 RNA polymerase III activity 2.3% (2/87) 6.32 0.000303 0.00548
GO:0001510 RNA methylation 3.45% (3/87) 4.48 0.000351 0.005781
GO:0032549 ribonucleoside binding 2.3% (2/87) 6.21 0.00035 0.005945
GO:0001882 nucleoside binding 2.3% (2/87) 6.21 0.00035 0.005945
GO:0008152 metabolic process 31.03% (27/87) 0.95 0.000373 0.00597
GO:0032259 methylation 4.6% (4/87) 3.56 0.000399 0.006199
GO:0016556 mRNA modification 2.3% (2/87) 6.1 0.000413 0.006247
GO:0005685 U1 snRNP 2.3% (2/87) 6.07 0.000429 0.006324
GO:1902494 catalytic complex 8.05% (7/87) 2.29 0.000592 0.008507
GO:0000398 mRNA splicing, via spliceosome 3.45% (3/87) 4.13 0.000718 0.010056
GO:0005666 RNA polymerase III complex 2.3% (2/87) 5.66 0.00075 0.010242
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 3.45% (3/87) 4.05 0.000839 0.011191
GO:0005488 binding 37.93% (33/87) 0.75 0.000881 0.01147
GO:0044237 cellular metabolic process 24.14% (21/87) 1.04 0.000929 0.011818
GO:1990904 ribonucleoprotein complex 5.75% (5/87) 2.74 0.000962 0.011977
GO:0018364 peptidyl-glutamine methylation 1.15% (1/87) 9.95 0.001013 0.012332
GO:0000375 RNA splicing, via transesterification reactions 3.45% (3/87) 3.93 0.001053 0.012544
GO:0034708 methyltransferase complex 2.3% (2/87) 5.37 0.00111 0.012952
GO:0043412 macromolecule modification 14.94% (13/87) 1.41 0.001165 0.013051
GO:0140535 intracellular protein-containing complex 5.75% (5/87) 2.68 0.001157 0.013221
GO:0032993 protein-DNA complex 3.45% (3/87) 3.87 0.001206 0.013243
GO:1902319 DNA strand elongation involved in nuclear cell cycle DNA replication 1.15% (1/87) 9.43 0.001447 0.014731
GO:1902983 DNA strand elongation involved in mitotic DNA replication 1.15% (1/87) 9.43 0.001447 0.014731
GO:1902296 DNA strand elongation involved in cell cycle DNA replication 1.15% (1/87) 9.43 0.001447 0.014731
GO:0005681 spliceosomal complex 3.45% (3/87) 3.78 0.001423 0.015327
GO:0003676 nucleic acid binding 16.09% (14/87) 1.29 0.001587 0.015875
GO:0008380 RNA splicing 3.45% (3/87) 3.7 0.001661 0.016314
GO:0034052 positive regulation of plant-type hypersensitive response 1.15% (1/87) 8.75 0.002314 0.021597
GO:0043903 regulation of biological process involved in symbiotic interaction 1.15% (1/87) 8.75 0.002314 0.021597
GO:0010363 regulation of plant-type hypersensitive response 1.15% (1/87) 8.75 0.002314 0.021597
GO:0009740 gibberellic acid mediated signaling pathway 1.15% (1/87) 8.29 0.00318 0.028269
GO:0010476 gibberellin mediated signaling pathway 1.15% (1/87) 8.29 0.00318 0.028269
GO:0003723 RNA binding 8.05% (7/87) 1.87 0.003165 0.029059
GO:0009937 regulation of gibberellic acid mediated signaling pathway 1.15% (1/87) 8.23 0.003325 0.02909
GO:1990498 mitotic spindle microtubule 1.15% (1/87) 8.11 0.003613 0.031129
GO:0036211 protein modification process 12.64% (11/87) 1.35 0.003875 0.032883
GO:0019538 protein metabolic process 14.94% (13/87) 1.2 0.003999 0.033422
GO:0043068 positive regulation of programmed cell death 1.15% (1/87) 7.9 0.00419 0.033521
GO:0070476 rRNA (guanine-N7)-methylation 1.15% (1/87) 7.9 0.00419 0.033521
GO:0006396 RNA processing 5.75% (5/87) 2.25 0.004135 0.034049
GO:0000481 maturation of 5S rRNA 1.15% (1/87) 7.8 0.004478 0.035323
GO:0097159 organic cyclic compound binding 25.29% (22/87) 0.82 0.005006 0.037885
GO:0055029 nuclear DNA-directed RNA polymerase complex 2.3% (2/87) 4.24 0.005149 0.037937
GO:1901564 organonitrogen compound metabolic process 17.24% (15/87) 1.06 0.005111 0.038165
GO:0008213 protein alkylation 2.3% (2/87) 4.27 0.004986 0.03825
GO:0006479 protein methylation 2.3% (2/87) 4.27 0.004986 0.03825
GO:0106035 protein maturation by [4Fe-4S] cluster transfer 1.15% (1/87) 7.47 0.005631 0.040427
GO:0000811 GINS complex 1.15% (1/87) 7.47 0.005631 0.040427
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 2.3% (2/87) 4.16 0.005736 0.04066
GO:0005656 nuclear pre-replicative complex 1.15% (1/87) 7.26 0.006494 0.044352
GO:0036387 pre-replicative complex 1.15% (1/87) 7.26 0.006494 0.044352
GO:0018444 translation release factor complex 1.15% (1/87) 7.29 0.006351 0.044454
GO:0000428 DNA-directed RNA polymerase complex 2.3% (2/87) 4.03 0.006842 0.04616
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (87) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms