Coexpression cluster: Cluster_2225 (Co-expression clusters of Correr et al 2020 (PRJEB38368))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016207 4-coumarate-CoA ligase activity 4.17% (5/120) 10.8 0.0 0.0
GO:0016878 acid-thiol ligase activity 4.17% (5/120) 6.22 0.0 2e-06
GO:0030638 polyketide metabolic process 3.33% (4/120) 7.15 0.0 3e-06
GO:0030639 polyketide biosynthetic process 3.33% (4/120) 7.17 0.0 4e-06
GO:0016405 CoA-ligase activity 4.17% (5/120) 5.55 0.0 1e-05
GO:0016877 ligase activity, forming carbon-sulfur bonds 4.17% (5/120) 4.85 1e-06 6.7e-05
GO:0009507 chloroplast 6.67% (8/120) 3.46 1e-06 7.1e-05
GO:0009536 plastid 6.67% (8/120) 3.42 1e-06 7.4e-05
GO:0044550 secondary metabolite biosynthetic process 3.33% (4/120) 5.52 2e-06 0.000121
GO:1904659 glucose transmembrane transport 1.67% (2/120) 8.25 2.1e-05 0.000889
GO:0005355 glucose transmembrane transporter activity 1.67% (2/120) 8.25 2.1e-05 0.000889
GO:0008645 hexose transmembrane transport 1.67% (2/120) 8.25 2.1e-05 0.000889
GO:0019748 secondary metabolic process 3.33% (4/120) 4.59 2.6e-05 0.001036
GO:0042995 cell projection 1.67% (2/120) 7.74 4.2e-05 0.001557
GO:0003824 catalytic activity 33.33% (40/120) 0.88 4.6e-05 0.00158
GO:0110165 cellular anatomical entity 32.5% (39/120) 0.88 6.2e-05 0.002
GO:0008360 regulation of cell shape 1.67% (2/120) 7.18 9.2e-05 0.002483
GO:0005575 cellular_component 35.0% (42/120) 0.81 9e-05 0.002578
GO:0043227 membrane-bounded organelle 17.5% (21/120) 1.31 0.000101 0.002594
GO:0030060 L-malate dehydrogenase activity 1.67% (2/120) 7.2 8.9e-05 0.002695
GO:0031982 vesicle 4.17% (5/120) 3.39 0.000129 0.003152
GO:0015149 hexose transmembrane transporter activity 1.67% (2/120) 6.75 0.000167 0.003898
GO:0003674 molecular_function 51.67% (62/120) 0.55 0.000183 0.004089
GO:0043231 intracellular membrane-bounded organelle 16.67% (20/120) 1.25 0.000261 0.00557
GO:0022604 regulation of cell morphogenesis 1.67% (2/120) 6.37 0.000283 0.0058
GO:0007163 establishment or maintenance of cell polarity 1.67% (2/120) 6.29 0.000316 0.006238
GO:0022607 cellular component assembly 5.0% (6/120) 2.64 0.000452 0.007485
GO:0034219 carbohydrate transmembrane transport 1.67% (2/120) 6.04 0.000445 0.007609
GO:0030865 cortical cytoskeleton organization 1.67% (2/120) 6.04 0.000445 0.007609
GO:0015749 monosaccharide transmembrane transport 1.67% (2/120) 6.05 0.000439 0.008047
GO:0015145 monosaccharide transmembrane transporter activity 1.67% (2/120) 6.05 0.000439 0.008047
GO:0022603 regulation of anatomical structure morphogenesis 1.67% (2/120) 5.95 0.000505 0.008096
GO:0019901 protein kinase binding 1.67% (2/120) 5.88 0.000556 0.008639
GO:0007264 small GTPase mediated signal transduction 1.67% (2/120) 5.78 0.000636 0.009599
GO:0043226 organelle 17.5% (21/120) 1.1 0.000695 0.009635
GO:0097708 intracellular vesicle 3.33% (4/120) 3.33 0.000733 0.009637
GO:0031410 cytoplasmic vesicle 3.33% (4/120) 3.33 0.000733 0.009637
GO:0043229 intracellular organelle 17.5% (21/120) 1.1 0.000694 0.00989
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors 2.5% (3/120) 4.16 0.000677 0.009918
GO:0016615 malate dehydrogenase activity 1.67% (2/120) 5.39 0.00109 0.013984
GO:0005856 cytoskeleton 2.5% (3/120) 3.86 0.001238 0.014771
GO:0016874 ligase activity 4.17% (5/120) 2.67 0.001235 0.015082
GO:0015293 symporter activity 1.67% (2/120) 5.31 0.00121 0.015145
GO:0032956 regulation of actin cytoskeleton organization 1.67% (2/120) 5.2 0.001407 0.01569
GO:0032970 regulation of actin filament-based process 1.67% (2/120) 5.19 0.001438 0.015691
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups 4.17% (5/120) 2.64 0.001353 0.015771
GO:0016043 cellular component organization 8.33% (10/120) 1.66 0.001384 0.015776
GO:0008460 dTDP-glucose 4,6-dehydratase activity 0.83% (1/120) 9.29 0.001596 0.017062
GO:0019900 kinase binding 1.67% (2/120) 5.06 0.001706 0.017859
GO:0005737 cytoplasm 9.17% (11/120) 1.51 0.001794 0.018403
GO:0051119 sugar transmembrane transporter activity 1.67% (2/120) 4.91 0.002106 0.021182
GO:0009965 leaf morphogenesis 0.83% (1/120) 8.48 0.002792 0.024695
GO:0009513 etioplast 0.83% (1/120) 8.48 0.002792 0.024695
GO:0009509 chromoplast 0.83% (1/120) 8.48 0.002792 0.024695
GO:0009501 amyloplast 0.83% (1/120) 8.48 0.002792 0.024695
GO:0009537 proplastid 0.83% (1/120) 8.48 0.002792 0.024695
GO:0071840 cellular component organization or biogenesis 8.33% (10/120) 1.5 0.00304 0.025995
GO:0010239 chloroplast mRNA processing 0.83% (1/120) 8.38 0.002991 0.026008
GO:0008643 carbohydrate transport 1.67% (2/120) 4.72 0.002697 0.026602
GO:0051493 regulation of cytoskeleton organization 1.67% (2/120) 4.71 0.002752 0.026641
GO:0005965 protein farnesyltransferase complex 0.83% (1/120) 8.2 0.003389 0.027168
GO:0004660 protein farnesyltransferase activity 0.83% (1/120) 8.2 0.003389 0.027168
GO:0018343 protein farnesylation 0.83% (1/120) 8.2 0.003389 0.027168
GO:0005622 intracellular anatomical structure 1.67% (2/120) 4.59 0.003249 0.027324
GO:0031425 chloroplast RNA processing 0.83% (1/120) 8.12 0.003588 0.027891
GO:0016746 acyltransferase activity 5.0% (6/120) 2.05 0.003553 0.028043
GO:0008177 succinate dehydrogenase (ubiquinone) activity 0.83% (1/120) 8.04 0.003787 0.028572
GO:0000104 succinate dehydrogenase activity 0.83% (1/120) 8.04 0.003787 0.028572
GO:0004662 CAAX-protein geranylgeranyltransferase activity 0.83% (1/120) 7.9 0.004185 0.030672
GO:0005953 CAAX-protein geranylgeranyltransferase complex 0.83% (1/120) 7.9 0.004185 0.030672
GO:0003839 gamma-glutamylcyclotransferase activity 0.83% (1/120) 7.83 0.004384 0.030808
GO:0019776 Atg8-family ligase activity 0.83% (1/120) 7.83 0.004384 0.030808
GO:0065003 protein-containing complex assembly 3.33% (4/120) 2.62 0.004268 0.030835
GO:0061928 glutathione specific gamma-glutamylcyclotransferase activity 0.83% (1/120) 7.77 0.004583 0.031771
GO:0008150 biological_process 39.17% (47/120) 0.49 0.004681 0.032017
GO:0051087 protein-folding chaperone binding 1.67% (2/120) 4.26 0.005025 0.033476
GO:0008670 2,4-dienoyl-CoA reductase (NADPH) activity 0.83% (1/120) 7.65 0.00498 0.033618
GO:0009987 cellular process 28.33% (34/120) 0.62 0.005227 0.034378
GO:1905392 plant organ morphogenesis 0.83% (1/120) 7.54 0.005378 0.034922
GO:0004106 chorismate mutase activity 0.83% (1/120) 7.48 0.005576 0.035759
GO:0047769 arogenate dehydratase activity 0.83% (1/120) 7.2 0.006767 0.041329
GO:0006121 mitochondrial electron transport, succinate to ubiquinone 0.83% (1/120) 7.2 0.006767 0.041329
GO:0004664 prephenate dehydratase activity 0.83% (1/120) 7.2 0.006767 0.041329
GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process 0.83% (1/120) 7.16 0.006966 0.041551
GO:0009094 L-phenylalanine biosynthetic process 0.83% (1/120) 7.16 0.006966 0.041551
GO:0050793 regulation of developmental process 1.67% (2/120) 4.06 0.006594 0.041764
GO:0048564 photosystem I assembly 0.83% (1/120) 7.0 0.007759 0.045749
GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) 0.83% (1/120) 6.86 0.008551 0.046667
GO:0045283 fumarate reductase complex 0.83% (1/120) 6.86 0.008551 0.046667
GO:0045257 succinate dehydrogenase complex (ubiquinone) 0.83% (1/120) 6.86 0.008551 0.046667
GO:0022900 electron transport chain 1.67% (2/120) 3.9 0.00817 0.047094
GO:0045281 succinate dehydrogenase complex 0.83% (1/120) 6.83 0.008749 0.047245
GO:0035493 SNARE complex assembly 0.83% (1/120) 6.93 0.008155 0.04754
GO:0016272 prefoldin complex 0.83% (1/120) 6.8 0.008947 0.047811
GO:0019899 enzyme binding 2.5% (3/120) 2.86 0.008432 0.048063
GO:0015291 secondary active transmembrane transporter activity 2.5% (3/120) 2.86 0.008532 0.048098
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (120) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms