Coexpression cluster: Cluster_295 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005575 cellular_component 34.51% (88/255) 0.79 0.0 8e-06
GO:0003729 mRNA binding 4.71% (12/255) 3.06 0.0 8e-06
GO:0006357 regulation of transcription by RNA polymerase II 5.1% (13/255) 2.94 0.0 9e-06
GO:0035196 miRNA processing 1.57% (4/255) 7.16 0.0 1.6e-05
GO:0003712 transcription coregulator activity 3.14% (8/255) 3.68 0.0 4.2e-05
GO:0110165 cellular anatomical entity 30.2% (77/255) 0.77 1e-06 8.8e-05
GO:0043231 intracellular membrane-bounded organelle 15.69% (40/255) 1.16 2e-06 0.000166
GO:0043227 membrane-bounded organelle 15.69% (40/255) 1.15 2e-06 0.000175
GO:0097346 INO80-type complex 1.57% (4/255) 5.25 4e-06 0.000362
GO:0003723 RNA binding 7.45% (19/255) 1.76 5e-06 0.000366
GO:0019219 regulation of nucleobase-containing compound metabolic process 7.84% (20/255) 1.62 1.2e-05 0.000697
GO:0005634 nucleus 9.8% (25/255) 1.41 1.1e-05 0.000744
GO:0070603 SWI/SNF superfamily-type complex 1.57% (4/255) 4.77 1.6e-05 0.000914
GO:0051252 regulation of RNA metabolic process 7.45% (19/255) 1.6 2.2e-05 0.001087
GO:0051171 regulation of nitrogen compound metabolic process 8.24% (21/255) 1.51 2.1e-05 0.001098
GO:0080090 regulation of primary metabolic process 8.24% (21/255) 1.5 2.4e-05 0.001101
GO:0043226 organelle 15.69% (40/255) 0.94 5.3e-05 0.001744
GO:0043229 intracellular organelle 15.69% (40/255) 0.94 5.3e-05 0.001823
GO:0046520 sphingoid biosynthetic process 1.18% (3/255) 5.44 5.1e-05 0.001845
GO:0006670 sphingosine metabolic process 1.18% (3/255) 5.44 5.1e-05 0.001845
GO:0046512 sphingosine biosynthetic process 1.18% (3/255) 5.44 5.1e-05 0.001845
GO:1904949 ATPase complex 1.57% (4/255) 4.4 4.4e-05 0.001879
GO:0003676 nucleic acid binding 13.33% (34/255) 1.02 7.5e-05 0.001882
GO:0034312 diol biosynthetic process 1.18% (3/255) 5.33 6.4e-05 0.00193
GO:0034311 diol metabolic process 1.18% (3/255) 5.33 6.4e-05 0.00193
GO:0061919 process utilizing autophagic mechanism 1.57% (4/255) 4.21 7.5e-05 0.001944
GO:0006914 autophagy 1.57% (4/255) 4.21 7.5e-05 0.001944
GO:0031011 Ino80 complex 1.18% (3/255) 5.3 6.7e-05 0.001948
GO:0060255 regulation of macromolecule metabolic process 8.63% (22/255) 1.34 7.4e-05 0.002053
GO:0046519 sphingoid metabolic process 1.18% (3/255) 5.06 0.000111 0.002676
GO:0046467 membrane lipid biosynthetic process 1.96% (5/255) 3.43 0.000116 0.002703
GO:0019222 regulation of metabolic process 8.63% (22/255) 1.29 0.000126 0.002848
GO:0012505 endomembrane system 1.57% (4/255) 3.98 0.000135 0.002973
GO:0010468 regulation of gene expression 7.84% (20/255) 1.35 0.000152 0.003247
GO:0006643 membrane lipid metabolic process 1.96% (5/255) 3.32 0.000167 0.003279
GO:0010556 regulation of macromolecule biosynthetic process 7.84% (20/255) 1.34 0.000166 0.00335
GO:0070918 regulatory ncRNA processing 1.57% (4/255) 3.91 0.000165 0.003421
GO:0006369 termination of RNA polymerase II transcription 0.78% (2/255) 6.68 0.000183 0.003498
GO:0009889 regulation of biosynthetic process 7.84% (20/255) 1.31 0.000211 0.00383
GO:0031323 regulation of cellular metabolic process 8.24% (21/255) 1.27 0.000219 0.003868
GO:0031326 regulation of cellular biosynthetic process 7.84% (20/255) 1.31 0.000209 0.003891
GO:0140110 transcription regulator activity 5.1% (13/255) 1.67 0.000283 0.004892
GO:0043484 regulation of RNA splicing 1.18% (3/255) 4.54 0.000319 0.005371
GO:0006353 DNA-templated transcription termination 0.78% (2/255) 6.25 0.000334 0.005495
GO:0046481 digalactosyldiacylglycerol synthase activity 0.78% (2/255) 5.97 0.000488 0.007215
GO:0035250 UDP-galactosyltransferase activity 0.78% (2/255) 5.97 0.000488 0.007215
GO:0019375 galactolipid biosynthetic process 0.78% (2/255) 5.97 0.000488 0.007215
GO:0019374 galactolipid metabolic process 0.78% (2/255) 5.97 0.000488 0.007215
GO:0046173 polyol biosynthetic process 1.18% (3/255) 4.32 0.0005 0.00725
GO:0140513 nuclear protein-containing complex 4.71% (12/255) 1.66 0.000524 0.007455
GO:0042594 response to starvation 1.18% (3/255) 4.35 0.000468 0.00754
GO:0030148 sphingolipid biosynthetic process 1.18% (3/255) 4.27 0.000546 0.007615
GO:0003690 double-stranded DNA binding 3.14% (8/255) 2.09 0.000677 0.009094
GO:0008150 biological_process 37.25% (95/255) 0.42 0.000665 0.009098
GO:1901576 organic substance biosynthetic process 7.45% (19/255) 1.19 0.000854 0.011251
GO:0006665 sphingolipid metabolic process 1.18% (3/255) 3.95 0.001035 0.012509
GO:0019908 nuclear cyclin-dependent protein kinase holoenzyme complex 0.78% (2/255) 5.43 0.001025 0.01259
GO:0008024 cyclin/CDK positive transcription elongation factor complex 0.78% (2/255) 5.43 0.001025 0.01259
GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity 0.78% (2/255) 5.41 0.001062 0.012623
GO:0008237 metallopeptidase activity 1.57% (4/255) 3.22 0.000981 0.012698
GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor 0.78% (2/255) 5.45 0.001006 0.012796
GO:0006355 regulation of DNA-templated transcription 5.88% (15/255) 1.33 0.001112 0.012801
GO:2001141 regulation of RNA biosynthetic process 5.88% (15/255) 1.33 0.001112 0.012801
GO:0031902 late endosome membrane 0.78% (2/255) 5.32 0.001199 0.013577
GO:0009991 response to extracellular stimulus 1.18% (3/255) 3.84 0.001286 0.014124
GO:0031667 response to nutrient levels 1.18% (3/255) 3.84 0.001278 0.014258
GO:0030662 coated vesicle membrane 0.78% (2/255) 5.19 0.001429 0.015015
GO:0012507 ER to Golgi transport vesicle membrane 0.78% (2/255) 5.19 0.001429 0.015015
GO:1901617 organic hydroxy compound biosynthetic process 1.57% (4/255) 3.08 0.001398 0.015132
GO:0030658 transport vesicle membrane 0.78% (2/255) 5.15 0.001518 0.015719
GO:0009058 biosynthetic process 7.45% (19/255) 1.11 0.001545 0.015779
GO:1903311 regulation of mRNA metabolic process 1.18% (3/255) 3.67 0.001801 0.018131
GO:0046165 alcohol biosynthetic process 1.18% (3/255) 3.65 0.001866 0.018528
GO:0004222 metalloendopeptidase activity 1.18% (3/255) 3.62 0.00199 0.019239
GO:0098588 bounding membrane of organelle 2.75% (7/255) 2.02 0.001977 0.019365
GO:0044249 cellular biosynthetic process 6.67% (17/255) 1.15 0.002101 0.020046
GO:1901259 chloroplast rRNA processing 0.78% (2/255) 4.86 0.002237 0.021059
GO:0010008 endosome membrane 1.18% (3/255) 3.52 0.002439 0.022671
GO:0019751 polyol metabolic process 1.18% (3/255) 3.5 0.002506 0.023
GO:0034470 ncRNA processing 2.75% (7/255) 1.93 0.00272 0.024651
GO:0000993 RNA polymerase II complex binding 0.78% (2/255) 4.56 0.003377 0.029497
GO:0042170 plastid membrane 1.57% (4/255) 2.73 0.003359 0.029701
GO:0016020 membrane 10.59% (27/255) 0.82 0.003322 0.02973
GO:0001727 lipid kinase activity 1.18% (3/255) 3.27 0.0039 0.032503
GO:0044528 regulation of mitochondrial mRNA stability 0.39% (1/255) 8.03 0.003813 0.032519
GO:0005849 mRNA cleavage factor complex 0.78% (2/255) 4.47 0.003783 0.032648
GO:0044283 small molecule biosynthetic process 2.75% (7/255) 1.84 0.003878 0.032695
GO:0051231 spindle elongation 0.78% (2/255) 4.4 0.004174 0.033251
GO:0006396 RNA processing 3.53% (9/255) 1.55 0.004141 0.033355
GO:0030659 cytoplasmic vesicle membrane 1.18% (3/255) 3.22 0.004297 0.033501
GO:0012506 vesicle membrane 1.18% (3/255) 3.22 0.004297 0.033501
GO:0048024 regulation of mRNA splicing, via spliceosome 0.78% (2/255) 4.41 0.004137 0.033703
GO:0005737 cytoplasm 6.67% (17/255) 1.05 0.004122 0.033963
GO:0031968 organelle outer membrane 1.57% (4/255) 2.61 0.004488 0.034248
GO:1901607 alpha-amino acid biosynthetic process 1.57% (4/255) 2.61 0.004488 0.034248
GO:0032806 carboxy-terminal domain protein kinase complex 0.78% (2/255) 4.32 0.004659 0.03482
GO:0034660 ncRNA metabolic process 3.14% (8/255) 1.64 0.004632 0.034979
GO:0031090 organelle membrane 3.14% (8/255) 1.62 0.00504 0.03691
GO:0043175 RNA polymerase core enzyme binding 0.78% (2/255) 4.27 0.005009 0.037056
GO:0005484 SNAP receptor activity 0.78% (2/255) 4.24 0.005168 0.037471
GO:0019867 outer membrane 1.57% (4/255) 2.54 0.005318 0.037796
GO:0050794 regulation of cellular process 9.02% (23/255) 0.84 0.005429 0.037844
GO:0008378 galactosyltransferase activity 0.78% (2/255) 4.23 0.00529 0.03797
GO:0006906 vesicle fusion 0.78% (2/255) 4.21 0.005412 0.038094
GO:0050684 regulation of mRNA processing 0.78% (2/255) 4.14 0.005957 0.040366
GO:0006378 mRNA polyadenylation 0.78% (2/255) 4.14 0.005915 0.040454
GO:0080135 regulation of cellular response to stress 0.78% (2/255) 4.13 0.006043 0.04057
GO:0008652 amino acid biosynthetic process 1.57% (4/255) 2.5 0.005883 0.040624
GO:0070063 RNA polymerase binding 0.78% (2/255) 4.07 0.006482 0.040866
GO:0008610 lipid biosynthetic process 2.75% (7/255) 1.7 0.006443 0.040977
GO:1990165 single-strand break-containing DNA binding 0.39% (1/255) 7.3 0.006346 0.041081
GO:0046452 dihydrofolate metabolic process 0.39% (1/255) 7.3 0.006346 0.041081
GO:0033699 DNA 5'-adenosine monophosphate hydrolase activity 0.39% (1/255) 7.3 0.006346 0.041081
GO:0044271 cellular nitrogen compound biosynthetic process 3.92% (10/255) 1.37 0.006186 0.041147
GO:0031201 SNARE complex 0.78% (2/255) 4.08 0.006438 0.041304
GO:0005488 binding 29.41% (75/255) 0.38 0.006634 0.041466
GO:0043539 protein serine/threonine kinase activator activity 0.78% (2/255) 4.03 0.006843 0.042406
GO:0016579 protein deubiquitination 1.18% (3/255) 2.92 0.00767 0.047124
GO:0004358 glutamate N-acetyltransferase activity 0.39% (1/255) 6.95 0.008032 0.047731
GO:0006592 ornithine biosynthetic process 0.39% (1/255) 6.95 0.008032 0.047731
GO:0001099 basal RNA polymerase II transcription machinery binding 0.78% (2/255) 3.9 0.008177 0.047811
GO:0001098 basal transcription machinery binding 0.78% (2/255) 3.9 0.008177 0.047811
GO:0009084 glutamine family amino acid biosynthetic process 0.78% (2/255) 3.89 0.008327 0.047912
GO:0032991 protein-containing complex 8.24% (21/255) 0.83 0.008264 0.047929
GO:0097159 organic cyclic compound binding 20.0% (51/255) 0.48 0.008453 0.048258
GO:0009527 plastid outer membrane 0.78% (2/255) 3.91 0.008029 0.048511
GO:0009707 chloroplast outer membrane 0.78% (2/255) 3.91 0.008029 0.048511
GO:0006325 chromatin organization 1.57% (4/255) 2.34 0.008655 0.049025
GO:0043295 glutathione binding 0.78% (2/255) 3.84 0.008782 0.049356
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (255) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms