Coexpression cluster: Cluster_4147 (Co-expression clusters of Correr et al 2020 (PRJEB38368))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1901565 organonitrogen compound catabolic process 10.53% (8/76) 3.78 0.0 5.9e-05
GO:0044248 cellular catabolic process 9.21% (7/76) 3.17 1.4e-05 0.000564
GO:0004372 glycine hydroxymethyltransferase activity 2.63% (2/76) 8.56 1.4e-05 0.000622
GO:0019264 glycine biosynthetic process from serine 2.63% (2/76) 8.56 1.4e-05 0.000622
GO:0070905 serine binding 2.63% (2/76) 8.56 1.4e-05 0.000622
GO:0048586 regulation of long-day photoperiodism, flowering 2.63% (2/76) 9.04 7e-06 0.000707
GO:1901564 organonitrogen compound metabolic process 25.0% (19/76) 1.59 1e-05 0.000722
GO:0006565 L-serine catabolic process 2.63% (2/76) 8.31 1.9e-05 0.000723
GO:0009056 catabolic process 11.84% (9/76) 2.71 1e-05 0.000831
GO:0046655 folic acid metabolic process 2.63% (2/76) 8.09 2.6e-05 0.000894
GO:1901575 organic substance catabolic process 11.84% (9/76) 2.78 7e-06 0.000932
GO:2000028 regulation of photoperiodism, flowering 2.63% (2/76) 7.93 3.3e-05 0.001038
GO:0005737 cytoplasm 15.79% (12/76) 2.29 6e-06 0.001173
GO:0016597 amino acid binding 2.63% (2/76) 7.7 4.5e-05 0.001231
GO:0050897 cobalt ion binding 2.63% (2/76) 7.74 4.2e-05 0.00125
GO:0004222 metalloendopeptidase activity 3.95% (3/76) 5.37 5.8e-05 0.001413
GO:0009071 serine family amino acid catabolic process 2.63% (2/76) 7.54 5.6e-05 0.001445
GO:0035999 tetrahydrofolate interconversion 2.63% (2/76) 7.33 7.4e-05 0.001708
GO:0003824 catalytic activity 36.84% (28/76) 1.03 8.7e-05 0.001713
GO:0006457 protein folding 5.26% (4/76) 4.15 8.4e-05 0.001737
GO:0043171 peptide catabolic process 2.63% (2/76) 7.25 8.4e-05 0.001822
GO:0042752 regulation of circadian rhythm 2.63% (2/76) 6.89 0.000137 0.002264
GO:0016742 hydroxymethyl-, formyl- and related transferase activity 2.63% (2/76) 6.9 0.000135 0.002324
GO:0006545 glycine biosynthetic process 2.63% (2/76) 6.9 0.000135 0.002324
GO:0043603 amide metabolic process 6.58% (5/76) 3.39 0.000125 0.002351
GO:0006730 one-carbon metabolic process 2.63% (2/76) 6.74 0.00017 0.002695
GO:0046653 tetrahydrofolate metabolic process 2.63% (2/76) 6.7 0.000179 0.002737
GO:0006807 nitrogen compound metabolic process 27.63% (21/76) 1.2 0.000191 0.002818
GO:0006544 glycine metabolic process 2.63% (2/76) 6.57 0.000216 0.002971
GO:0051082 unfolded protein binding 3.95% (3/76) 4.72 0.000215 0.00306
GO:0008237 metallopeptidase activity 3.95% (3/76) 4.55 0.000305 0.004057
GO:0006563 L-serine metabolic process 2.63% (2/76) 5.9 0.000536 0.006712
GO:0046872 metal ion binding 11.84% (9/76) 1.95 0.00052 0.006714
GO:0006760 folic acid-containing compound metabolic process 2.63% (2/76) 5.84 0.00059 0.007166
GO:0043169 cation binding 11.84% (9/76) 1.92 0.000629 0.007417
GO:0042558 pteridine-containing compound metabolic process 2.63% (2/76) 5.76 0.00065 0.007462
GO:0043177 organic acid binding 2.63% (2/76) 5.46 0.00099 0.010765
GO:0031406 carboxylic acid binding 2.63% (2/76) 5.46 0.00099 0.010765
GO:1901607 alpha-amino acid biosynthetic process 3.95% (3/76) 3.94 0.001035 0.010958
GO:2000241 regulation of reproductive process 2.63% (2/76) 5.35 0.001142 0.011795
GO:0008652 amino acid biosynthetic process 3.95% (3/76) 3.83 0.001292 0.013019
GO:0051603 proteolysis involved in protein catabolic process 5.26% (4/76) 3.05 0.001437 0.013489
GO:0005951 carbamoyl-phosphate synthase complex 1.32% (1/76) 9.49 0.00139 0.013671
GO:0008152 metabolic process 30.26% (23/76) 0.92 0.001429 0.013723
GO:0009070 serine family amino acid biosynthetic process 2.63% (2/76) 5.08 0.001646 0.014781
GO:0043167 ion binding 22.37% (17/76) 1.12 0.001617 0.014839
GO:0071704 organic substance metabolic process 28.95% (22/76) 0.92 0.001793 0.015758
GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity 1.32% (1/76) 9.04 0.001895 0.015976
GO:0006044 N-acetylglucosamine metabolic process 1.32% (1/76) 9.04 0.001895 0.015976
GO:0006575 cellular modified amino acid metabolic process 2.63% (2/76) 4.96 0.001958 0.016171
GO:0006767 water-soluble vitamin metabolic process 2.63% (2/76) 4.83 0.002327 0.018136
GO:0110165 cellular anatomical entity 31.58% (24/76) 0.84 0.002306 0.018316
GO:0005739 mitochondrion 5.26% (4/76) 2.84 0.00244 0.018324
GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity 1.32% (1/76) 8.7 0.0024 0.018357
GO:0009069 serine family amino acid metabolic process 2.63% (2/76) 4.84 0.002295 0.018583
GO:0005575 cellular_component 34.21% (26/76) 0.78 0.002635 0.01909
GO:1901566 organonitrogen compound biosynthetic process 6.58% (5/76) 2.4 0.00263 0.019394
GO:0016887 ATP hydrolysis activity 5.26% (4/76) 2.79 0.002763 0.019677
GO:0006766 vitamin metabolic process 2.63% (2/76) 4.62 0.00311 0.021771
GO:0019538 protein metabolic process 15.79% (12/76) 1.28 0.003524 0.024256
GO:0019364 pyridine nucleotide catabolic process 2.63% (2/76) 4.2 0.005435 0.026102
GO:1901605 alpha-amino acid metabolic process 3.95% (3/76) 3.27 0.003865 0.026165
GO:0016740 transferase activity 17.11% (13/76) 1.14 0.005399 0.026232
GO:0009191 ribonucleoside diphosphate catabolic process 2.63% (2/76) 4.21 0.005338 0.026245
GO:0009134 nucleoside diphosphate catabolic process 2.63% (2/76) 4.21 0.005338 0.026245
GO:0072526 pyridine-containing compound catabolic process 2.63% (2/76) 4.19 0.005546 0.026325
GO:0009135 purine nucleoside diphosphate metabolic process 2.63% (2/76) 4.22 0.005326 0.026824
GO:0046031 ADP metabolic process 2.63% (2/76) 4.22 0.005326 0.026824
GO:0006096 glycolytic process 2.63% (2/76) 4.22 0.005326 0.026824
GO:0009181 purine ribonucleoside diphosphate catabolic process 2.63% (2/76) 4.22 0.005326 0.026824
GO:0009179 purine ribonucleoside diphosphate metabolic process 2.63% (2/76) 4.22 0.005326 0.026824
GO:0046032 ADP catabolic process 2.63% (2/76) 4.22 0.005326 0.026824
GO:0009137 purine nucleoside diphosphate catabolic process 2.63% (2/76) 4.22 0.005326 0.026824
GO:0043648 dicarboxylic acid metabolic process 2.63% (2/76) 4.15 0.005832 0.027372
GO:0009166 nucleotide catabolic process 2.63% (2/76) 4.07 0.006505 0.027413
GO:0009132 nucleoside diphosphate metabolic process 2.63% (2/76) 4.07 0.006439 0.027414
GO:0036258 multivesicular body assembly 1.32% (1/76) 7.28 0.00643 0.027662
GO:0070676 intralumenal vesicle formation 1.32% (1/76) 7.28 0.00643 0.027662
GO:0036257 multivesicular body organization 1.32% (1/76) 7.28 0.00643 0.027662
GO:0009261 ribonucleotide catabolic process 2.63% (2/76) 4.12 0.006036 0.027697
GO:0009154 purine ribonucleotide catabolic process 2.63% (2/76) 4.12 0.006023 0.027948
GO:0004103 choline kinase activity 1.32% (1/76) 7.33 0.006179 0.028041
GO:1901292 nucleoside phosphate catabolic process 2.63% (2/76) 4.04 0.006759 0.028197
GO:0009185 ribonucleoside diphosphate metabolic process 2.63% (2/76) 4.08 0.006373 0.028301
GO:0006195 purine nucleotide catabolic process 2.63% (2/76) 4.09 0.00632 0.028373
GO:0006518 peptide metabolic process 3.95% (3/76) 3.21 0.004339 0.028447
GO:0044183 protein folding chaperone 2.63% (2/76) 4.02 0.006895 0.028475
GO:0034038 deoxyhypusine synthase activity 1.32% (1/76) 7.86 0.004291 0.028585
GO:0140662 ATP-dependent protein folding chaperone 2.63% (2/76) 4.23 0.005218 0.028731
GO:1901606 alpha-amino acid catabolic process 2.63% (2/76) 4.35 0.004466 0.028821
GO:0044238 primary metabolic process 26.32% (20/76) 0.87 0.004613 0.028865
GO:0006082 organic acid metabolic process 6.58% (5/76) 2.17 0.00521 0.029079
GO:0006508 proteolysis 6.58% (5/76) 2.22 0.004577 0.029083
GO:0043436 oxoacid metabolic process 6.58% (5/76) 2.17 0.005193 0.029379
GO:0008612 peptidyl-lysine modification to peptidyl-hypusine 1.32% (1/76) 7.7 0.004795 0.029556
GO:0070279 vitamin B6 binding 2.63% (2/76) 4.24 0.005182 0.029723
GO:0030170 pyridoxal phosphate binding 2.63% (2/76) 4.24 0.005182 0.029723
GO:0016053 organic acid biosynthetic process 3.95% (3/76) 2.92 0.007506 0.030393
GO:0046394 carboxylic acid biosynthetic process 3.95% (3/76) 2.92 0.007506 0.030393
GO:0008150 biological_process 42.11% (32/76) 0.6 0.005164 0.030466
GO:0019752 carboxylic acid metabolic process 6.58% (5/76) 2.18 0.005132 0.030717
GO:0004017 adenylate kinase activity 1.32% (1/76) 7.02 0.007686 0.030818
GO:0009063 amino acid catabolic process 2.63% (2/76) 4.25 0.005098 0.030966
GO:0019842 vitamin binding 2.63% (2/76) 3.92 0.007936 0.031214
GO:0072523 purine-containing compound catabolic process 2.63% (2/76) 3.92 0.007863 0.031227
GO:0004096 catalase activity 1.32% (1/76) 6.93 0.008188 0.031902
GO:0009987 cellular process 30.26% (23/76) 0.72 0.008482 0.032435
GO:0004305 ethanolamine kinase activity 1.32% (1/76) 6.88 0.008439 0.032572
GO:0046034 ATP metabolic process 2.63% (2/76) 3.85 0.008647 0.032762
GO:0036402 proteasome-activating activity 1.32% (1/76) 6.76 0.009191 0.034508
GO:0009205 purine ribonucleoside triphosphate metabolic process 2.63% (2/76) 3.77 0.009606 0.03574
GO:0006656 phosphatidylcholine biosynthetic process 1.32% (1/76) 6.68 0.009692 0.03574
GO:0009144 purine nucleoside triphosphate metabolic process 2.63% (2/76) 3.76 0.009828 0.035921
GO:0098789 obsolete pre-mRNA cleavage required for polyadenylation 1.32% (1/76) 6.65 0.009943 0.03602
GO:0017111 ribonucleoside triphosphate phosphatase activity 5.26% (4/76) 2.25 0.010124 0.036358
GO:0140096 catalytic activity, acting on a protein 13.16% (10/76) 1.22 0.01025 0.036494
GO:1901136 carbohydrate derivative catabolic process 2.63% (2/76) 3.68 0.010842 0.037316
GO:1904091 non-ribosomal peptide synthetase activity 1.32% (1/76) 6.54 0.010694 0.037428
GO:0004363 glutathione synthase activity 1.32% (1/76) 6.54 0.010694 0.037428
GO:0004332 fructose-bisphosphate aldolase activity 1.32% (1/76) 6.49 0.011069 0.037472
GO:0000813 ESCRT I complex 1.32% (1/76) 6.52 0.010819 0.037548
GO:0016830 carbon-carbon lyase activity 2.63% (2/76) 3.67 0.01101 0.03758
GO:0016879 ligase activity, forming carbon-nitrogen bonds 2.63% (2/76) 3.64 0.011383 0.037913
GO:0016741 transferase activity, transferring one-carbon groups 3.95% (3/76) 2.7 0.01134 0.038078
GO:0004175 endopeptidase activity 3.95% (3/76) 2.67 0.011939 0.039446
GO:0046470 phosphatidylcholine metabolic process 1.32% (1/76) 6.33 0.012319 0.04038
GO:0016462 pyrophosphatase activity 5.26% (4/76) 2.16 0.012699 0.040973
GO:0009199 ribonucleoside triphosphate metabolic process 2.63% (2/76) 3.55 0.01284 0.041107
GO:0006090 pyruvate metabolic process 2.63% (2/76) 3.54 0.012984 0.04125
GO:0006526 arginine biosynthetic process 1.32% (1/76) 6.29 0.012694 0.041281
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 5.26% (4/76) 2.13 0.013441 0.042374
GO:0009141 nucleoside triphosphate metabolic process 2.63% (2/76) 3.51 0.013588 0.042513
GO:0016817 hydrolase activity, acting on acid anhydrides 5.26% (4/76) 2.12 0.013872 0.043077
GO:0031902 late endosome membrane 1.32% (1/76) 6.07 0.014815 0.043089
GO:0006750 glutathione biosynthetic process 1.32% (1/76) 6.07 0.014815 0.043089
GO:0048583 regulation of response to stimulus 2.63% (2/76) 3.45 0.014754 0.043524
GO:0046496 nicotinamide nucleotide metabolic process 2.63% (2/76) 3.45 0.014601 0.043698
GO:0019362 pyridine nucleotide metabolic process 2.63% (2/76) 3.45 0.014716 0.043724
GO:0046434 organophosphate catabolic process 2.63% (2/76) 3.47 0.014241 0.043892
GO:0006646 phosphatidylethanolamine biosynthetic process 1.32% (1/76) 6.09 0.014566 0.04391
GO:0046337 phosphatidylethanolamine metabolic process 1.32% (1/76) 6.09 0.014566 0.04391
GO:0042542 response to hydrogen peroxide 1.32% (1/76) 6.1 0.014441 0.044179
GO:0032204 regulation of telomere maintenance 1.32% (1/76) 6.01 0.015438 0.044587
GO:0019184 nonribosomal peptide biosynthetic process 1.32% (1/76) 5.99 0.015563 0.044634
GO:0072524 pyridine-containing compound metabolic process 2.63% (2/76) 3.38 0.016081 0.045803
GO:0008540 proteasome regulatory particle, base subcomplex 1.32% (1/76) 5.92 0.016434 0.046488
GO:0071712 ER-associated misfolded protein catabolic process 1.32% (1/76) 5.84 0.017305 0.048289
GO:0006525 arginine metabolic process 1.32% (1/76) 5.83 0.017429 0.048309
GO:0061630 ubiquitin protein ligase activity 2.63% (2/76) 3.33 0.017231 0.048412
GO:0016054 organic acid catabolic process 2.63% (2/76) 3.3 0.01785 0.048822
GO:0046395 carboxylic acid catabolic process 2.63% (2/76) 3.3 0.01785 0.048822
GO:0030388 fructose 1,6-bisphosphate metabolic process 1.32% (1/76) 5.76 0.018299 0.049719
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (76) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms