Coexpression cluster: Cluster_2199 (Co-expression clusters of Correr et al 2020 (PRJEB38368))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0008150 biological_process 50.75% (34/67) 0.87 6e-05 0.003744
GO:0009746 response to hexose 2.99% (2/67) 7.55 5.5e-05 0.003969
GO:0009749 response to glucose 2.99% (2/67) 7.55 5.5e-05 0.003969
GO:0009743 response to carbohydrate 2.99% (2/67) 7.55 5.5e-05 0.003969
GO:0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity 2.99% (2/67) 7.55 5.5e-05 0.003969
GO:0034284 response to monosaccharide 2.99% (2/67) 7.55 5.5e-05 0.003969
GO:0140534 endoplasmic reticulum protein-containing complex 4.48% (3/67) 4.96 0.000134 0.006705
GO:0010033 response to organic substance 5.97% (4/67) 3.97 0.000132 0.007351
GO:0000153 cytoplasmic ubiquitin ligase complex 2.99% (2/67) 7.88 3.5e-05 0.008696
GO:0009889 regulation of biosynthetic process 13.43% (9/67) 2.09 0.000258 0.009226
GO:0010556 regulation of macromolecule biosynthetic process 13.43% (9/67) 2.11 0.000225 0.009397
GO:0010468 regulation of gene expression 13.43% (9/67) 2.12 0.000214 0.009752
GO:0031326 regulation of cellular biosynthetic process 13.43% (9/67) 2.09 0.000256 0.009882
GO:0042221 response to chemical 7.46% (5/67) 3.93 2.1e-05 0.010523
GO:0003872 6-phosphofructokinase activity 2.99% (2/67) 6.22 0.000345 0.011531
GO:0050794 regulation of cellular process 16.42% (11/67) 1.7 0.000499 0.013149
GO:0004721 phosphoprotein phosphatase activity 4.48% (3/67) 4.27 0.000536 0.013435
GO:0031323 regulation of cellular metabolic process 13.43% (9/67) 1.97 0.000456 0.013445
GO:0008443 phosphofructokinase activity 2.99% (2/67) 5.97 0.000489 0.013609
GO:0019222 regulation of metabolic process 13.43% (9/67) 1.93 0.000572 0.013655
GO:0060255 regulation of macromolecule metabolic process 13.43% (9/67) 1.98 0.000437 0.013676
GO:0018738 S-formylglutathione hydrolase activity 1.49% (1/67) 10.32 0.00078 0.015635
GO:0050789 regulation of biological process 16.42% (11/67) 1.63 0.00075 0.015658
GO:0051171 regulation of nitrogen compound metabolic process 11.94% (8/67) 2.05 0.000699 0.015922
GO:0080090 regulation of primary metabolic process 11.94% (8/67) 2.03 0.000743 0.01619
GO:0065007 biological regulation 16.42% (11/67) 1.53 0.001334 0.023865
GO:0015979 photosynthesis 2.99% (2/67) 5.29 0.00124 0.023896
GO:0051252 regulation of RNA metabolic process 10.45% (7/67) 2.09 0.001289 0.023914
GO:0016788 hydrolase activity, acting on ester bonds 8.96% (6/67) 2.3 0.001419 0.024519
GO:0019200 carbohydrate kinase activity 2.99% (2/67) 5.13 0.001544 0.025787
GO:0019219 regulation of nucleobase-containing compound metabolic process 10.45% (7/67) 2.03 0.001613 0.026072
GO:0005575 cellular_component 35.82% (24/67) 0.84 0.001882 0.029467
GO:0006807 nitrogen compound metabolic process 23.88% (16/67) 0.98 0.005315 0.031697
GO:0004103 choline kinase activity 1.49% (1/67) 7.52 0.005449 0.031742
GO:0030891 VCB complex 1.49% (1/67) 7.52 0.005449 0.031742
GO:0044238 primary metabolic process 26.87% (18/67) 0.9 0.005534 0.031869
GO:0072521 purine-containing compound metabolic process 4.48% (3/67) 3.1 0.005304 0.032018
GO:0004824 lysine-tRNA ligase activity 1.49% (1/67) 7.58 0.005227 0.03233
GO:0006430 lysyl-tRNA aminoacylation 1.49% (1/67) 7.58 0.005227 0.03233
GO:1901292 nucleoside phosphate catabolic process 2.99% (2/67) 4.22 0.005294 0.032343
GO:0009150 purine ribonucleotide metabolic process 4.48% (3/67) 3.57 0.002151 0.032652
GO:1901700 response to oxygen-containing compound 2.99% (2/67) 4.24 0.005125 0.032918
GO:0044281 small molecule metabolic process 8.96% (6/67) 1.91 0.005207 0.033019
GO:0009166 nucleotide catabolic process 2.99% (2/67) 4.25 0.005094 0.033142
GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway 1.49% (1/67) 7.4 0.005892 0.033169
GO:1902767 isoprenoid biosynthetic process via mevalonate 1.49% (1/67) 7.4 0.005892 0.033169
GO:0009132 nucleoside diphosphate metabolic process 2.99% (2/67) 4.26 0.005042 0.033235
GO:2000242 negative regulation of reproductive process 1.49% (1/67) 7.38 0.006003 0.033418
GO:0044248 cellular catabolic process 5.97% (4/67) 2.55 0.005003 0.033423
GO:1901575 organic substance catabolic process 7.46% (5/67) 2.11 0.006079 0.033466
GO:0072523 purine-containing compound catabolic process 2.99% (2/67) 4.11 0.006163 0.033564
GO:0009185 ribonucleoside diphosphate metabolic process 2.99% (2/67) 4.26 0.00499 0.033783
GO:1901361 organic cyclic compound catabolic process 4.48% (3/67) 3.15 0.004798 0.033857
GO:0006195 purine nucleotide catabolic process 2.99% (2/67) 4.27 0.004949 0.033962
GO:0090693 plant organ senescence 1.49% (1/67) 7.04 0.007554 0.034094
GO:0010150 leaf senescence 1.49% (1/67) 7.04 0.007554 0.034094
GO:0006491 N-glycan processing 1.49% (1/67) 7.3 0.006336 0.034131
GO:0008152 metabolic process 28.36% (19/67) 0.82 0.007721 0.034231
GO:1902494 catalytic complex 7.46% (5/67) 2.19 0.004932 0.034317
GO:0006355 regulation of DNA-templated transcription 8.96% (6/67) 1.94 0.004796 0.034328
GO:2001141 regulation of RNA biosynthetic process 8.96% (6/67) 1.94 0.004796 0.034328
GO:0009144 purine nucleoside triphosphate metabolic process 2.99% (2/67) 3.94 0.007713 0.034503
GO:0009987 cellular process 31.34% (21/67) 0.77 0.007539 0.034654
GO:0010427 abscisic acid binding 1.49% (1/67) 6.98 0.007886 0.034656
GO:0046034 ATP metabolic process 2.99% (2/67) 4.03 0.006781 0.034666
GO:0019439 aromatic compound catabolic process 4.48% (3/67) 3.18 0.004574 0.034717
GO:0045337 farnesyl diphosphate biosynthetic process 1.49% (1/67) 7.15 0.007 0.034724
GO:0003674 molecular_function 50.75% (34/67) 0.52 0.006939 0.034766
GO:0009261 ribonucleotide catabolic process 2.99% (2/67) 4.3 0.004725 0.034809
GO:0051787 misfolded protein binding 1.49% (1/67) 6.96 0.007996 0.034836
GO:0051241 negative regulation of multicellular organismal process 1.49% (1/67) 7.18 0.006889 0.034865
GO:0009056 catabolic process 7.46% (5/67) 2.04 0.007458 0.034919
GO:0006470 protein dephosphorylation 2.99% (2/67) 4.06 0.006556 0.034944
GO:0009205 purine ribonucleoside triphosphate metabolic process 2.99% (2/67) 3.95 0.007537 0.034965
GO:0070181 small ribosomal subunit rRNA binding 1.49% (1/67) 7.2 0.006779 0.035012
GO:0051093 negative regulation of developmental process 1.49% (1/67) 7.2 0.006779 0.035012
GO:0004305 ethanolamine kinase activity 1.49% (1/67) 7.06 0.007443 0.035179
GO:0071704 organic substance metabolic process 28.36% (19/67) 0.89 0.004566 0.035191
GO:0016791 phosphatase activity 4.48% (3/67) 2.93 0.007312 0.035226
GO:0019637 organophosphate metabolic process 5.97% (4/67) 2.39 0.007245 0.03524
GO:0009154 purine ribonucleotide catabolic process 2.99% (2/67) 4.31 0.004714 0.035253
GO:0004722 protein serine/threonine phosphatase activity 2.99% (2/67) 4.04 0.006698 0.035322
GO:0006753 nucleoside phosphate metabolic process 4.48% (3/67) 2.93 0.007403 0.035323
GO:0009117 nucleotide metabolic process 4.48% (3/67) 2.94 0.0072 0.035365
GO:0009134 nucleoside diphosphate catabolic process 2.99% (2/67) 4.4 0.004176 0.035462
GO:0009191 ribonucleoside diphosphate catabolic process 2.99% (2/67) 4.4 0.004176 0.035462
GO:0045338 farnesyl diphosphate metabolic process 1.49% (1/67) 6.92 0.008218 0.035491
GO:0019364 pyridine nucleotide catabolic process 2.99% (2/67) 4.38 0.004253 0.035509
GO:0006163 purine nucleotide metabolic process 4.48% (3/67) 3.19 0.004468 0.03553
GO:0072526 pyridine-containing compound catabolic process 2.99% (2/67) 4.37 0.004339 0.035639
GO:0005787 signal peptidase complex 1.49% (1/67) 7.77 0.004561 0.035706
GO:0044270 cellular nitrogen compound catabolic process 4.48% (3/67) 3.35 0.003294 0.035874
GO:0046700 heterocycle catabolic process 4.48% (3/67) 3.35 0.003294 0.035874
GO:0004421 hydroxymethylglutaryl-CoA synthase activity 1.49% (1/67) 7.81 0.00445 0.035961
GO:0006656 phosphatidylcholine biosynthetic process 1.49% (1/67) 6.86 0.008549 0.036298
GO:1901136 carbohydrate derivative catabolic process 2.99% (2/67) 3.86 0.008514 0.036458
GO:0046031 ADP metabolic process 2.99% (2/67) 4.4 0.004167 0.036623
GO:0006096 glycolytic process 2.99% (2/67) 4.4 0.004167 0.036623
GO:0009137 purine nucleoside diphosphate catabolic process 2.99% (2/67) 4.4 0.004167 0.036623
GO:0009179 purine ribonucleoside diphosphate metabolic process 2.99% (2/67) 4.4 0.004167 0.036623
GO:0046032 ADP catabolic process 2.99% (2/67) 4.4 0.004167 0.036623
GO:0009181 purine ribonucleoside diphosphate catabolic process 2.99% (2/67) 4.4 0.004167 0.036623
GO:0009135 purine nucleoside diphosphate metabolic process 2.99% (2/67) 4.4 0.004167 0.036623
GO:0000836 Hrd1p ubiquitin ligase complex 1.49% (1/67) 8.38 0.003006 0.036732
GO:0000839 Hrd1p ubiquitin ligase ERAD-L complex 1.49% (1/67) 8.38 0.003006 0.036732
GO:0002020 protease binding 1.49% (1/67) 8.38 0.003006 0.036732
GO:1990381 ubiquitin-specific protease binding 1.49% (1/67) 8.38 0.003006 0.036732
GO:0000835 ER ubiquitin ligase complex 1.49% (1/67) 8.38 0.003006 0.036732
GO:0017177 glucosidase II complex 1.49% (1/67) 8.27 0.003228 0.036759
GO:0048581 negative regulation of post-embryonic development 1.49% (1/67) 8.18 0.003451 0.036782
GO:0003723 RNA binding 8.96% (6/67) 2.02 0.003619 0.036999
GO:0043603 amide metabolic process 4.48% (3/67) 2.83 0.008832 0.037182
GO:0009259 ribonucleotide metabolic process 4.48% (3/67) 3.36 0.003194 0.037211
GO:1901564 organonitrogen compound metabolic process 19.4% (13/67) 1.23 0.003123 0.037251
GO:0019693 ribose phosphate metabolic process 4.48% (3/67) 3.31 0.00358 0.037364
GO:0034655 nucleobase-containing compound catabolic process 4.48% (3/67) 3.47 0.002585 0.038085
GO:0019840 isoprenoid binding 1.49% (1/67) 6.74 0.009323 0.038923
GO:0009910 negative regulation of flower development 1.49% (1/67) 8.49 0.002784 0.039846
GO:0006090 pyruvate metabolic process 2.99% (2/67) 3.73 0.010208 0.040271
GO:1901135 carbohydrate derivative metabolic process 5.97% (4/67) 2.77 0.002904 0.040407
GO:0004864 protein phosphatase inhibitor activity 1.49% (1/67) 6.67 0.009765 0.040431
GO:0004725 protein tyrosine phosphatase activity 1.49% (1/67) 6.66 0.009875 0.040553
GO:0042732 D-xylose metabolic process 1.49% (1/67) 6.61 0.010206 0.040582
GO:0048040 UDP-glucuronate decarboxylase activity 1.49% (1/67) 6.61 0.010206 0.040582
GO:0110165 cellular anatomical entity 29.85% (20/67) 0.76 0.010114 0.040862
GO:0009199 ribonucleoside triphosphate metabolic process 2.99% (2/67) 3.73 0.010094 0.041115
GO:0003676 nucleic acid binding 16.42% (11/67) 1.32 0.004126 0.041342
GO:0009141 nucleoside triphosphate metabolic process 2.99% (2/67) 3.69 0.010686 0.041827
GO:0055086 nucleobase-containing small molecule metabolic process 4.48% (3/67) 2.71 0.011005 0.042088
GO:0046434 organophosphate catabolic process 2.99% (2/67) 3.66 0.011204 0.042204
GO:0046470 phosphatidylcholine metabolic process 1.49% (1/67) 6.52 0.010868 0.04221
GO:0019212 phosphatase inhibitor activity 1.49% (1/67) 6.5 0.010979 0.04231
GO:0055087 Ski complex 1.49% (1/67) 6.47 0.011199 0.042506
GO:0042562 hormone binding 1.49% (1/67) 6.42 0.01164 0.042881
GO:0046496 nicotinamide nucleotide metabolic process 2.99% (2/67) 3.64 0.011489 0.042957
GO:0019362 pyridine nucleotide metabolic process 2.99% (2/67) 3.63 0.01158 0.042975
GO:0009640 photomorphogenesis 1.49% (1/67) 6.35 0.012191 0.043318
GO:0009738 abscisic acid-activated signaling pathway 1.49% (1/67) 6.35 0.012191 0.043318
GO:2000765 regulation of cytoplasmic translation 1.49% (1/67) 6.36 0.012081 0.043544
GO:2000767 positive regulation of cytoplasmic translation 1.49% (1/67) 6.36 0.012081 0.043544
GO:0046337 phosphatidylethanolamine metabolic process 1.49% (1/67) 6.27 0.012852 0.044102
GO:0006646 phosphatidylethanolamine biosynthetic process 1.49% (1/67) 6.27 0.012852 0.044102
GO:0032991 protein-containing complex 11.94% (8/67) 1.37 0.012066 0.044125
GO:0043178 alcohol binding 1.49% (1/67) 6.26 0.012962 0.044177
GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity 1.49% (1/67) 6.29 0.012742 0.044331
GO:0070940 obsolete dephosphorylation of RNA polymerase II C-terminal domain 1.49% (1/67) 6.29 0.012742 0.044331
GO:0072524 pyridine-containing compound metabolic process 2.99% (2/67) 3.56 0.012663 0.044678
GO:0046294 formaldehyde catabolic process 1.49% (1/67) 6.21 0.013402 0.044763
GO:0046292 formaldehyde metabolic process 1.49% (1/67) 6.21 0.013402 0.044763
GO:0110095 cellular detoxification of aldehyde 1.49% (1/67) 6.21 0.013402 0.044763
GO:0008654 phospholipid biosynthetic process 2.99% (2/67) 3.49 0.013887 0.046076
GO:0000151 ubiquitin ligase complex 2.99% (2/67) 3.48 0.014052 0.046316
GO:0042578 phosphoric ester hydrolase activity 4.48% (3/67) 2.57 0.014417 0.04721
GO:1901565 organonitrogen compound catabolic process 4.48% (3/67) 2.54 0.015073 0.049035
GO:0005829 cytosol 5.97% (4/67) 2.07 0.015296 0.04944
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (67) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms