Coexpression cluster: Cluster_1654 (Co-expression clusters of Correr et al 2020 (PRJEB38368))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0032991 protein-containing complex 18.85% (36/191) 2.03 0.0 0.0
GO:0005575 cellular_component 36.65% (70/191) 0.87 0.0 2.8e-05
GO:0005747 mitochondrial respiratory chain complex I 2.09% (4/191) 6.35 0.0 5.6e-05
GO:0045271 respiratory chain complex I 2.09% (4/191) 6.06 0.0 9.5e-05
GO:0030964 NADH dehydrogenase complex 2.09% (4/191) 5.97 1e-06 9.7e-05
GO:0098796 membrane protein complex 5.24% (10/191) 2.91 1e-06 0.000159
GO:0046907 intracellular transport 5.76% (11/191) 2.63 2e-06 0.000216
GO:0051641 cellular localization 6.81% (13/191) 2.36 2e-06 0.000229
GO:0051649 establishment of localization in cell 5.76% (11/191) 2.58 3e-06 0.000238
GO:0008541 proteasome regulatory particle, lid subcomplex 1.57% (3/191) 6.83 3e-06 0.000247
GO:0043177 organic acid binding 2.09% (4/191) 5.13 6e-06 0.000347
GO:0031406 carboxylic acid binding 2.09% (4/191) 5.13 6e-06 0.000347
GO:1990204 oxidoreductase complex 2.62% (5/191) 4.29 7e-06 0.000362
GO:0098803 respiratory chain complex 2.09% (4/191) 5.16 6e-06 0.00037
GO:1902495 transmembrane transporter complex 2.09% (4/191) 5.18 5e-06 0.000377
GO:1990351 transporter complex 2.09% (4/191) 4.85 1.3e-05 0.000642
GO:0006575 cellular modified amino acid metabolic process 2.09% (4/191) 4.63 2.4e-05 0.001105
GO:0032797 SMN complex 1.05% (2/191) 7.41 6.6e-05 0.002724
GO:1902494 catalytic complex 6.28% (12/191) 1.94 8.7e-05 0.002829
GO:0140535 intracellular protein-containing complex 4.71% (9/191) 2.4 6.6e-05 0.002853
GO:0004372 glycine hydroxymethyltransferase activity 1.05% (2/191) 7.23 8.6e-05 0.002906
GO:0070905 serine binding 1.05% (2/191) 7.23 8.6e-05 0.002906
GO:0019264 glycine biosynthetic process from serine 1.05% (2/191) 7.23 8.6e-05 0.002906
GO:0098800 inner mitochondrial membrane protein complex 2.09% (4/191) 4.18 7.9e-05 0.003092
GO:0006565 L-serine catabolic process 1.05% (2/191) 6.98 0.000122 0.003798
GO:0001216 DNA-binding transcription activator activity 1.05% (2/191) 6.76 0.000164 0.004568
GO:0046655 folic acid metabolic process 1.05% (2/191) 6.76 0.000164 0.004568
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific 1.05% (2/191) 6.76 0.000164 0.004568
GO:0043226 organelle 16.23% (31/191) 0.99 0.000185 0.004646
GO:0001055 RNA polymerase II activity 1.57% (3/191) 4.79 0.000193 0.004697
GO:0043227 membrane-bounded organelle 14.66% (28/191) 1.05 0.000201 0.004746
GO:0043231 intracellular membrane-bounded organelle 14.66% (28/191) 1.06 0.000178 0.004775
GO:0043229 intracellular organelle 16.23% (31/191) 0.99 0.000185 0.004792
GO:0005665 RNA polymerase II, core complex 1.57% (3/191) 4.74 0.000213 0.00489
GO:0006120 mitochondrial electron transport, NADH to ubiquinone 1.05% (2/191) 6.49 0.000239 0.005325
GO:0019798 procollagen-proline dioxygenase activity 1.05% (2/191) 6.33 0.000297 0.005509
GO:0019471 4-hydroxyproline metabolic process 1.05% (2/191) 6.33 0.000297 0.005509
GO:0031545 peptidyl-proline 4-dioxygenase activity 1.05% (2/191) 6.33 0.000297 0.005509
GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline 1.05% (2/191) 6.33 0.000297 0.005509
GO:0004656 procollagen-proline 4-dioxygenase activity 1.05% (2/191) 6.33 0.000297 0.005509
GO:0019511 peptidyl-proline hydroxylation 1.05% (2/191) 6.3 0.000312 0.005531
GO:0031543 peptidyl-proline dioxygenase activity 1.05% (2/191) 6.3 0.000312 0.005531
GO:0050897 cobalt ion binding 1.05% (2/191) 6.41 0.000267 0.005786
GO:0016597 amino acid binding 1.05% (2/191) 6.37 0.000282 0.005937
GO:0015031 protein transport 3.66% (7/191) 2.44 0.000359 0.006084
GO:0009071 serine family amino acid catabolic process 1.05% (2/191) 6.21 0.000353 0.006104
GO:1903530 regulation of secretion by cell 1.05% (2/191) 6.11 0.000404 0.00617
GO:0000339 RNA cap binding 1.05% (2/191) 6.11 0.000404 0.00617
GO:0051046 regulation of secretion 1.05% (2/191) 6.11 0.000404 0.00617
GO:0110165 cellular anatomical entity 27.75% (53/191) 0.65 0.000379 0.006283
GO:0017157 regulation of exocytosis 1.05% (2/191) 6.13 0.000395 0.006413
GO:0098798 mitochondrial protein-containing complex 2.09% (4/191) 3.53 0.00044 0.006598
GO:0031410 cytoplasmic vesicle 2.62% (5/191) 2.98 0.000484 0.006856
GO:0097708 intracellular vesicle 2.62% (5/191) 2.98 0.000484 0.006856
GO:0035999 tetrahydrofolate interconversion 1.05% (2/191) 6.0 0.000468 0.006881
GO:0016602 CCAAT-binding factor complex 1.05% (2/191) 5.96 0.000497 0.006915
GO:0018126 protein hydroxylation 1.05% (2/191) 5.93 0.000517 0.007064
GO:0140513 nuclear protein-containing complex 5.24% (10/191) 1.81 0.000662 0.008888
GO:0000325 plant-type vacuole 1.05% (2/191) 5.71 0.0007 0.009243
GO:0006545 glycine biosynthetic process 1.05% (2/191) 5.58 0.000846 0.010134
GO:0016742 hydroxymethyl-, formyl- and related transferase activity 1.05% (2/191) 5.58 0.000846 0.010134
GO:0009306 protein secretion 1.05% (2/191) 5.61 0.000808 0.010151
GO:0035592 establishment of protein localization to extracellular region 1.05% (2/191) 5.61 0.000808 0.010151
GO:0071692 protein localization to extracellular region 1.05% (2/191) 5.61 0.000808 0.010151
GO:0006810 transport 8.9% (17/191) 1.26 0.000842 0.010412
GO:0006904 vesicle docking involved in exocytosis 1.05% (2/191) 5.52 0.00091 0.010742
GO:0080167 response to karrikin 0.52% (1/191) 10.03 0.000953 0.011083
GO:0016192 vesicle-mediated transport 3.66% (7/191) 2.16 0.001097 0.012041
GO:0045292 mRNA cis splicing, via spliceosome 1.05% (2/191) 5.36 0.001132 0.012082
GO:0046653 tetrahydrofolate metabolic process 1.05% (2/191) 5.37 0.001118 0.012092
GO:0060627 regulation of vesicle-mediated transport 1.05% (2/191) 5.39 0.001089 0.012116
GO:0006730 one-carbon metabolic process 1.05% (2/191) 5.41 0.00106 0.012146
GO:0031982 vesicle 2.62% (5/191) 2.72 0.001079 0.012185
GO:0001054 RNA polymerase I activity 1.05% (2/191) 5.33 0.001176 0.012384
GO:0005768 endosome 2.09% (4/191) 3.13 0.001243 0.012742
GO:0005736 RNA polymerase I complex 1.05% (2/191) 5.27 0.001283 0.012812
GO:0043022 ribosome binding 1.57% (3/191) 3.85 0.001271 0.012858
GO:0045184 establishment of protein localization 3.66% (7/191) 2.13 0.001239 0.012869
GO:0051234 establishment of localization 8.9% (17/191) 1.2 0.001361 0.013257
GO:0006544 glycine metabolic process 1.05% (2/191) 5.24 0.001346 0.013269
GO:0005737 cytoplasm 7.85% (15/191) 1.29 0.001452 0.013795
GO:0001056 RNA polymerase III activity 1.05% (2/191) 5.18 0.001443 0.013874
GO:0000387 spliceosomal snRNP assembly 1.05% (2/191) 5.14 0.001543 0.01448
GO:0015700 arsenite transport 0.52% (1/191) 9.3 0.001588 0.014555
GO:0015105 arsenite transmembrane transporter activity 0.52% (1/191) 9.3 0.001588 0.014555
GO:0034518 RNA cap binding complex 1.05% (2/191) 5.05 0.001735 0.015533
GO:0055029 nuclear DNA-directed RNA polymerase complex 1.57% (3/191) 3.69 0.001722 0.015601
GO:0140029 exocytic process 1.05% (2/191) 4.98 0.001919 0.016985
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 1.57% (3/191) 3.61 0.002018 0.017464
GO:0051179 localization 8.9% (17/191) 1.14 0.002 0.017504
GO:0046961 proton-transporting ATPase activity, rotational mechanism 1.05% (2/191) 4.91 0.002092 0.017521
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism 1.05% (2/191) 4.91 0.002092 0.017521
GO:0042625 ATPase-coupled ion transmembrane transporter activity 1.05% (2/191) 4.91 0.002092 0.017521
GO:0035268 protein mannosylation 0.52% (1/191) 8.81 0.002223 0.017851
GO:0035269 protein O-linked mannosylation 0.52% (1/191) 8.81 0.002223 0.017851
GO:0004582 dolichyl-phosphate beta-D-mannosyltransferase activity 0.52% (1/191) 8.81 0.002223 0.017851
GO:0097502 mannosylation 0.52% (1/191) 8.81 0.002223 0.017851
GO:0008104 protein localization 3.66% (7/191) 1.97 0.002278 0.018109
GO:0070727 cellular macromolecule localization 3.66% (7/191) 1.97 0.002308 0.018157
GO:0033036 macromolecule localization 3.66% (7/191) 1.97 0.002333 0.018171
GO:0019646 aerobic electron transport chain 1.05% (2/191) 4.77 0.002545 0.01888
GO:0005746 mitochondrial respirasome 0.52% (1/191) 8.62 0.00254 0.019025
GO:0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor 0.52% (1/191) 8.62 0.00254 0.019025
GO:0004368 glycerol-3-phosphate dehydrogenase (quinone) activity 0.52% (1/191) 8.62 0.00254 0.019025
GO:0000428 DNA-directed RNA polymerase complex 1.57% (3/191) 3.48 0.002611 0.019189
GO:0051049 regulation of transport 1.05% (2/191) 4.78 0.002502 0.019297
GO:0043021 ribonucleoprotein complex binding 1.57% (3/191) 3.47 0.002681 0.019518
GO:0046983 protein dimerization activity 2.62% (5/191) 2.41 0.002709 0.019543
GO:0070469 respirasome 0.52% (1/191) 8.45 0.002857 0.020418
GO:0006366 transcription by RNA polymerase II 1.05% (2/191) 4.66 0.002947 0.020868
GO:0048278 vesicle docking 1.05% (2/191) 4.63 0.003087 0.021663
GO:0006563 L-serine metabolic process 1.05% (2/191) 4.58 0.003303 0.022972
GO:0090069 regulation of ribosome biogenesis 0.52% (1/191) 8.16 0.003491 0.023853
GO:0090071 negative regulation of ribosome biogenesis 0.52% (1/191) 8.16 0.003491 0.023853
GO:0005666 RNA polymerase III complex 1.05% (2/191) 4.53 0.003526 0.023883
GO:0006760 folic acid-containing compound metabolic process 1.05% (2/191) 4.51 0.003627 0.024357
GO:0034062 5'-3' RNA polymerase activity 1.57% (3/191) 3.29 0.003793 0.025041
GO:0097747 RNA polymerase activity 1.57% (3/191) 3.29 0.003793 0.025041
GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway 1.05% (2/191) 4.44 0.003939 0.025569
GO:0006886 intracellular protein transport 2.62% (5/191) 2.29 0.003909 0.025591
GO:0042558 pteridine-containing compound metabolic process 1.05% (2/191) 4.43 0.003992 0.0257
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 0.52% (1/191) 7.81 0.004441 0.027674
GO:0000035 acyl binding 0.52% (1/191) 7.81 0.004441 0.027674
GO:0016207 4-coumarate-CoA ligase activity 0.52% (1/191) 7.81 0.004441 0.027674
GO:0030880 RNA polymerase complex 1.57% (3/191) 3.21 0.004374 0.027931
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 1.57% (3/191) 3.19 0.004604 0.028464
GO:0019842 vitamin binding 1.57% (3/191) 3.17 0.004728 0.028998
GO:0022904 respiratory electron transport chain 1.05% (2/191) 4.26 0.005064 0.030821
GO:0009060 aerobic respiration 1.05% (2/191) 4.14 0.00593 0.035262
GO:0071985 multivesicular body sorting pathway 1.05% (2/191) 4.14 0.005898 0.035341
GO:0032509 endosome transport via multivesicular body sorting pathway 1.05% (2/191) 4.14 0.005898 0.035341
GO:0032879 regulation of localization 1.05% (2/191) 4.12 0.006059 0.035755
GO:0045333 cellular respiration 1.05% (2/191) 4.1 0.006287 0.036549
GO:0071705 nitrogen compound transport 3.66% (7/191) 1.7 0.006247 0.036589
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process 1.05% (2/191) 4.09 0.006353 0.036659
GO:1990904 ribonucleoprotein complex 3.14% (6/191) 1.87 0.006504 0.037256
GO:0009268 response to pH 0.52% (1/191) 7.16 0.006969 0.039058
GO:0005483 soluble NSF attachment protein activity 0.52% (1/191) 7.16 0.006969 0.039058
GO:0010447 response to acidic pH 0.52% (1/191) 7.16 0.006969 0.039058
GO:0045272 plasma membrane respiratory chain complex I 0.52% (1/191) 7.1 0.007285 0.039965
GO:0004449 isocitrate dehydrogenase (NAD+) activity 0.52% (1/191) 7.1 0.007285 0.039965
GO:0018208 peptidyl-proline modification 1.05% (2/191) 3.99 0.007239 0.040281
GO:0008150 biological_process 36.13% (69/191) 0.38 0.007551 0.041137
GO:0046982 protein heterodimerization activity 1.05% (2/191) 3.93 0.007847 0.042452
GO:0070534 protein K63-linked ubiquitination 0.52% (1/191) 6.98 0.007916 0.042528
GO:0051640 organelle localization 1.57% (3/191) 2.88 0.008295 0.043078
GO:1901605 alpha-amino acid metabolic process 2.09% (4/191) 2.35 0.008247 0.043119
GO:0002182 cytoplasmic translational elongation 0.52% (1/191) 6.92 0.008231 0.043325
GO:0043933 protein-containing complex organization 3.14% (6/191) 1.8 0.008136 0.043413
GO:0009987 cellular process 25.65% (49/191) 0.48 0.008205 0.04348
GO:0005846 nuclear cap binding complex 0.52% (1/191) 6.86 0.008547 0.044091
GO:0022406 membrane docking 1.05% (2/191) 3.85 0.008705 0.044322
GO:0140056 organelle localization by membrane tethering 1.05% (2/191) 3.85 0.008705 0.044322
GO:0005794 Golgi apparatus 2.09% (4/191) 2.32 0.009023 0.045346
GO:0045324 late endosome to vacuole transport 1.05% (2/191) 3.83 0.008974 0.045395
GO:0097552 mitochondrial double-strand break repair via homologous recombination 0.52% (1/191) 6.71 0.009492 0.047095
GO:0097551 mitochondrial double-strand break repair 0.52% (1/191) 6.71 0.009492 0.047095
GO:0006413 translational initiation 1.05% (2/191) 3.76 0.009803 0.048335
GO:0009070 serine family amino acid biosynthetic process 1.05% (2/191) 3.76 0.009884 0.048426
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (191) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms