Coexpression cluster: Cluster_2538 (Co-expression clusters of Correr et al 2020 (PRJEB38368))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0004774 succinate-CoA ligase activity 1.52% (1/66) 8.98 0.001975 0.025404
GO:0004775 succinate-CoA ligase (ADP-forming) activity 1.52% (1/66) 8.98 0.001975 0.025404
GO:0042709 succinate-CoA ligase complex 1.52% (1/66) 8.98 0.001975 0.025404
GO:0031425 chloroplast RNA processing 1.52% (1/66) 8.98 0.001975 0.025404
GO:0043227 membrane-bounded organelle 18.18% (12/66) 1.36 0.002097 0.026069
GO:0061927 TOC-TIC supercomplex I 1.52% (1/66) 8.83 0.002194 0.026403
GO:0043226 organelle 19.7% (13/66) 1.27 0.00235 0.026561
GO:0009361 succinate-CoA ligase complex (ADP-forming) 1.52% (1/66) 11.15 0.000439 0.027307
GO:0004776 succinate-CoA ligase (GDP-forming) activity 1.52% (1/66) 11.15 0.000439 0.027307
GO:0043229 intracellular organelle 19.7% (13/66) 1.27 0.002348 0.027366
GO:0000028 ribosomal small subunit assembly 3.03% (2/66) 6.79 0.000157 0.029275
GO:0043231 intracellular membrane-bounded organelle 18.18% (12/66) 1.37 0.001969 0.029377
GO:0009058 biosynthetic process 12.12% (8/66) 1.81 0.001939 0.03014
GO:0006106 fumarate metabolic process 1.52% (1/66) 9.06 0.001865 0.030253
GO:0004333 fumarate hydratase activity 1.52% (1/66) 9.06 0.001865 0.030253
GO:0015994 chlorophyll metabolic process 3.03% (2/66) 6.26 0.000327 0.030468
GO:0010239 chloroplast mRNA processing 1.52% (1/66) 9.25 0.001646 0.030702
GO:0015935 small ribosomal subunit 3.03% (2/66) 5.12 0.001569 0.030797
GO:0033013 tetrapyrrole metabolic process 3.03% (2/66) 5.03 0.001781 0.031635
GO:0010028 xanthophyll cycle 1.52% (1/66) 8.35 0.003071 0.031816
GO:0046422 violaxanthin de-epoxidase activity 1.52% (1/66) 8.35 0.003071 0.031816
GO:0009501 amyloplast 1.52% (1/66) 9.35 0.001537 0.03184
GO:0009965 leaf morphogenesis 1.52% (1/66) 9.35 0.001537 0.03184
GO:0009509 chromoplast 1.52% (1/66) 9.35 0.001537 0.03184
GO:0009537 proplastid 1.52% (1/66) 9.35 0.001537 0.03184
GO:0009513 etioplast 1.52% (1/66) 9.35 0.001537 0.03184
GO:1905392 plant organ morphogenesis 1.52% (1/66) 8.4 0.002961 0.032487
GO:0044271 cellular nitrogen compound biosynthetic process 7.58% (5/66) 2.32 0.003366 0.033932
GO:0045239 tricarboxylic acid cycle enzyme complex 3.03% (2/66) 7.14 9.7e-05 0.036255
GO:0048529 magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity 1.52% (1/66) 10.15 0.000878 0.036401
GO:0006108 malate metabolic process 3.03% (2/66) 6.29 0.000313 0.038939
GO:0006099 tricarboxylic acid cycle 3.03% (2/66) 5.38 0.001092 0.040748
GO:0022627 cytosolic small ribosomal subunit 3.03% (2/66) 5.55 0.000877 0.040876
GO:0005575 cellular_component 36.36% (24/66) 0.86 0.001486 0.04265
GO:0043648 dicarboxylic acid metabolic process 3.03% (2/66) 4.35 0.004433 0.043511
GO:0044249 cellular biosynthetic process 12.12% (8/66) 2.01 0.000821 0.043732
GO:0006778 porphyrin-containing compound metabolic process 3.03% (2/66) 5.2 0.001408 0.043771
GO:0044272 sulfur compound biosynthetic process 3.03% (2/66) 4.2 0.005402 0.04686
GO:1901576 organic substance biosynthetic process 12.12% (8/66) 1.89 0.001402 0.047531
GO:0046510 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity 1.52% (1/66) 7.54 0.005368 0.04767
GO:0009106 lipoate metabolic process 1.52% (1/66) 7.57 0.005258 0.047839
GO:0009107 lipoate biosynthetic process 1.52% (1/66) 7.57 0.005258 0.047839
GO:0016992 lipoate synthase activity 1.52% (1/66) 7.57 0.005258 0.047839
GO:0046506 sulfolipid biosynthetic process 1.52% (1/66) 7.35 0.006132 0.049724
GO:0046505 sulfolipid metabolic process 1.52% (1/66) 7.35 0.006132 0.049724
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (66) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms