Coexpression cluster: Cluster_1778 (Co-expression clusters of Correr et al 2020 (PRJEB38368))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003700 DNA-binding transcription factor activity 11.49% (10/87) 3.1 0.0 9.2e-05
GO:0140110 transcription regulator activity 11.49% (10/87) 2.84 1e-06 0.000222
GO:0009889 regulation of biosynthetic process 13.79% (12/87) 2.12 2e-05 0.001015
GO:0031326 regulation of cellular biosynthetic process 13.79% (12/87) 2.13 1.9e-05 0.001209
GO:0010556 regulation of macromolecule biosynthetic process 13.79% (12/87) 2.15 1.6e-05 0.00127
GO:0031323 regulation of cellular metabolic process 13.79% (12/87) 2.01 4.2e-05 0.001304
GO:0019222 regulation of metabolic process 13.79% (12/87) 1.97 5.7e-05 0.001357
GO:0060255 regulation of macromolecule metabolic process 13.79% (12/87) 2.02 4e-05 0.001367
GO:2001141 regulation of RNA biosynthetic process 11.49% (10/87) 2.3 3.7e-05 0.001454
GO:0006355 regulation of DNA-templated transcription 11.49% (10/87) 2.3 3.7e-05 0.001454
GO:0003677 DNA binding 12.64% (11/87) 2.1 5.1e-05 0.001454
GO:0051252 regulation of RNA metabolic process 11.49% (10/87) 2.23 5.7e-05 0.001469
GO:0010468 regulation of gene expression 13.79% (12/87) 2.16 1.5e-05 0.001585
GO:0019219 regulation of nucleobase-containing compound metabolic process 11.49% (10/87) 2.17 7.8e-05 0.001627
GO:1990837 sequence-specific double-stranded DNA binding 5.75% (5/87) 3.55 7.6e-05 0.001691
GO:0004535 poly(A)-specific ribonuclease activity 2.3% (2/87) 7.2 9e-05 0.001745
GO:0050794 regulation of cellular process 16.09% (14/87) 1.67 0.000113 0.001956
GO:0043928 exonucleolytic catabolism of deadenylated mRNA 2.3% (2/87) 6.99 0.000121 0.001976
GO:0065007 biological regulation 17.24% (15/87) 1.6 0.000111 0.002024
GO:0050789 regulation of biological process 16.09% (14/87) 1.6 0.000189 0.002936
GO:0051171 regulation of nitrogen compound metabolic process 11.49% (10/87) 1.99 0.000215 0.003185
GO:0080090 regulation of primary metabolic process 11.49% (10/87) 1.98 0.000232 0.003278
GO:0030015 CCR4-NOT core complex 2.3% (2/87) 6.03 0.000454 0.005652
GO:0009755 hormone-mediated signaling pathway 3.45% (3/87) 4.37 0.000439 0.005686
GO:0003690 double-stranded DNA binding 5.75% (5/87) 2.97 0.000479 0.005729
GO:0030014 CCR4-NOT complex 2.3% (2/87) 6.07 0.000429 0.005803
GO:0009873 ethylene-activated signaling pathway 2.3% (2/87) 5.91 0.000529 0.005881
GO:0003676 nucleic acid binding 17.24% (15/87) 1.39 0.000525 0.006048
GO:0000291 nuclear-transcribed mRNA catabolic process, exonucleolytic 2.3% (2/87) 5.69 0.000718 0.007199
GO:0000976 transcription cis-regulatory region binding 4.6% (4/87) 3.33 0.000714 0.007405
GO:0001067 transcription regulatory region nucleic acid binding 4.6% (4/87) 3.33 0.000714 0.007405
GO:0000175 3'-5'-RNA exonuclease activity 2.3% (2/87) 5.04 0.001745 0.016955
GO:0043565 sequence-specific DNA binding 5.75% (5/87) 2.51 0.00195 0.01838
GO:0004532 RNA exonuclease activity 2.3% (2/87) 4.87 0.002203 0.019579
GO:0016896 RNA exonuclease activity, producing 5'-phosphomonoesters 2.3% (2/87) 4.87 0.002203 0.019579
GO:0000932 P-body 2.3% (2/87) 4.69 0.002835 0.024495
GO:0000160 phosphorelay signal transduction system 2.3% (2/87) 4.6 0.003185 0.026773
GO:0036464 cytoplasmic ribonucleoprotein granule 2.3% (2/87) 4.52 0.003543 0.028993
GO:0035770 ribonucleoprotein granule 2.3% (2/87) 4.5 0.003646 0.029077
GO:0005868 cytoplasmic dynein complex 1.15% (1/87) 8.0 0.003902 0.029596
GO:0045505 dynein intermediate chain binding 1.15% (1/87) 8.0 0.003902 0.029596
GO:0030286 dynein complex 1.15% (1/87) 7.8 0.004478 0.033162
GO:0042283 dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase activity 1.15% (1/87) 7.71 0.004767 0.034475
GO:0008408 3'-5' exonuclease activity 2.3% (2/87) 4.09 0.006322 0.043695
GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity 1.15% (1/87) 7.33 0.006207 0.04387
GO:0140285 endosome fission 1.15% (1/87) 7.11 0.007213 0.047732
GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 2.3% (2/87) 4.0 0.007077 0.047843
GO:0000956 nuclear-transcribed mRNA catabolic process 2.3% (2/87) 3.97 0.007428 0.048125
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (87) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms