Coexpression cluster: Cluster_577 (Co-expression clusters of Correr et al 2020 (PRJEB38368))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0070413 trehalose metabolism in response to stress 4.93% (11/223) 7.55 0.0 0.0
GO:0005992 trehalose biosynthetic process 4.93% (11/223) 6.75 0.0 0.0
GO:0004805 trehalose-phosphatase activity 4.93% (11/223) 6.76 0.0 0.0
GO:0005991 trehalose metabolic process 4.93% (11/223) 6.63 0.0 0.0
GO:0046351 disaccharide biosynthetic process 4.93% (11/223) 6.33 0.0 0.0
GO:0009312 oligosaccharide biosynthetic process 4.93% (11/223) 6.26 0.0 0.0
GO:0019203 carbohydrate phosphatase activity 4.93% (11/223) 6.05 0.0 0.0
GO:0005984 disaccharide metabolic process 4.93% (11/223) 5.41 0.0 0.0
GO:0009311 oligosaccharide metabolic process 4.93% (11/223) 5.25 0.0 0.0
GO:0016051 carbohydrate biosynthetic process 4.93% (11/223) 3.68 0.0 0.0
GO:0016791 phosphatase activity 5.38% (12/223) 3.2 0.0 1e-06
GO:0045900 negative regulation of translational elongation 1.35% (3/223) 8.52 0.0 4e-06
GO:0042578 phosphoric ester hydrolase activity 5.38% (12/223) 2.83 0.0 9e-06
GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen 2.69% (6/223) 4.64 0.0 9e-06
GO:0005829 cytosol 7.17% (16/223) 2.34 0.0 9e-06
GO:0006448 regulation of translational elongation 1.35% (3/223) 7.52 1e-06 2.8e-05
GO:0009058 biosynthetic process 10.76% (24/223) 1.64 1e-06 4.2e-05
GO:1901576 organic substance biosynthetic process 10.31% (23/223) 1.65 2e-06 5.8e-05
GO:0051537 2 iron, 2 sulfur cluster binding 1.79% (4/223) 5.31 4e-06 0.000133
GO:0005575 cellular_component 32.74% (73/223) 0.71 5e-06 0.000177
GO:0016491 oxidoreductase activity 8.97% (20/223) 1.68 6e-06 0.000186
GO:0043024 ribosomal small subunit binding 1.35% (3/223) 6.34 8e-06 0.000244
GO:0008150 biological_process 40.81% (91/223) 0.55 2e-05 0.000563
GO:0003824 catalytic activity 29.6% (66/223) 0.71 2e-05 0.000573
GO:0046247 terpene catabolic process 1.35% (3/223) 5.68 3.1e-05 0.000779
GO:0016121 carotene catabolic process 1.35% (3/223) 5.68 3.1e-05 0.000779
GO:0010436 carotenoid dioxygenase activity 1.35% (3/223) 5.68 3.1e-05 0.000779
GO:0120253 hydrocarbon catabolic process 1.35% (3/223) 5.66 3.2e-05 0.00078
GO:0005975 carbohydrate metabolic process 5.83% (13/223) 1.96 3.8e-05 0.000891
GO:0009584 detection of visible light 0.9% (2/223) 7.64 4.8e-05 0.001076
GO:0009583 detection of light stimulus 0.9% (2/223) 7.59 5.1e-05 0.001086
GO:0008152 metabolic process 26.46% (59/223) 0.72 5.1e-05 0.001104
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen 1.79% (4/223) 4.29 6e-05 0.001232
GO:0016119 carotene metabolic process 1.35% (3/223) 5.29 6.9e-05 0.001379
GO:0016788 hydrolase activity, acting on ester bonds 6.28% (14/223) 1.78 7.3e-05 0.00141
GO:0004478 methionine adenosyltransferase activity 0.9% (2/223) 7.15 9.6e-05 0.001791
GO:0008300 isoprenoid catabolic process 1.35% (3/223) 5.1 0.000102 0.001866
GO:0010277 chlorophyllide a oxygenase [overall] activity 0.9% (2/223) 7.04 0.000111 0.001978
GO:0043022 ribosome binding 1.79% (4/223) 4.04 0.000117 0.002021
GO:0110165 cellular anatomical entity 27.8% (62/223) 0.65 0.000122 0.002061
GO:0006556 S-adenosylmethionine biosynthetic process 0.9% (2/223) 6.9 0.000134 0.002158
GO:0006741 NADP biosynthetic process 0.9% (2/223) 6.9 0.000134 0.002158
GO:0003951 NAD+ kinase activity 0.9% (2/223) 6.87 0.00014 0.002203
GO:0120252 hydrocarbon metabolic process 1.35% (3/223) 4.91 0.00015 0.002256
GO:0042214 terpene metabolic process 1.35% (3/223) 4.92 0.000147 0.002257
GO:0000995 RNA polymerase III general transcription initiation factor activity 0.9% (2/223) 6.78 0.000159 0.002339
GO:0046500 S-adenosylmethionine metabolic process 0.9% (2/223) 6.56 0.000216 0.0031
GO:0009582 detection of abiotic stimulus 0.9% (2/223) 6.51 0.000231 0.003123
GO:0051606 detection of stimulus 0.9% (2/223) 6.51 0.000231 0.003123
GO:0009581 detection of external stimulus 0.9% (2/223) 6.51 0.000231 0.003123
GO:0051540 metal cluster binding 1.79% (4/223) 3.75 0.000252 0.003267
GO:0051536 iron-sulfur cluster binding 1.79% (4/223) 3.75 0.000252 0.003267
GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) 0.9% (2/223) 6.35 0.000289 0.003687
GO:0043021 ribonucleoprotein complex binding 1.79% (4/223) 3.66 0.000317 0.003967
GO:0000126 transcription factor TFIIIB complex 0.9% (2/223) 6.25 0.000335 0.004037
GO:0071704 organic substance metabolic process 24.22% (54/223) 0.66 0.00033 0.00405
GO:0009416 response to light stimulus 1.79% (4/223) 3.6 0.000364 0.004241
GO:0010207 photosystem II assembly 0.9% (2/223) 6.19 0.000364 0.004308
GO:0034248 regulation of amide metabolic process 1.79% (4/223) 3.58 0.00039 0.004312
GO:0006417 regulation of translation 1.79% (4/223) 3.58 0.00039 0.004312
GO:0097550 transcription preinitiation complex 0.9% (2/223) 6.15 0.000384 0.00439
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 2.69% (6/223) 2.67 0.000413 0.004492
GO:0022627 cytosolic small ribosomal subunit 1.35% (3/223) 4.37 0.000445 0.004767
GO:0009314 response to radiation 1.79% (4/223) 3.49 0.000488 0.005148
GO:0001006 RNA polymerase III type 3 promoter sequence-specific DNA binding 0.9% (2/223) 5.87 0.000561 0.005829
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 2.69% (6/223) 2.54 0.000667 0.006824
GO:0034249 negative regulation of amide metabolic process 1.35% (3/223) 4.14 0.000708 0.007029
GO:0017148 negative regulation of translation 1.35% (3/223) 4.14 0.000708 0.007029
GO:0045551 cinnamyl-alcohol dehydrogenase activity 0.9% (2/223) 5.61 0.0008 0.00783
GO:0044238 primary metabolic process 22.42% (50/223) 0.64 0.000847 0.008166
GO:0000992 RNA polymerase III cis-regulatory region sequence-specific DNA binding 0.9% (2/223) 5.54 0.000889 0.008337
GO:0001016 RNA polymerase III transcription regulatory region sequence-specific DNA binding 0.9% (2/223) 5.54 0.000889 0.008337
GO:0051213 dioxygenase activity 1.79% (4/223) 3.21 0.001016 0.009398
GO:0015935 small ribosomal subunit 1.35% (3/223) 3.95 0.001042 0.009509
GO:0016618 hydroxypyruvate reductase activity 0.9% (2/223) 5.4 0.00108 0.009724
GO:0009809 lignin biosynthetic process 0.9% (2/223) 5.36 0.001131 0.010046
GO:0044242 cellular lipid catabolic process 1.79% (4/223) 3.12 0.00128 0.011221
GO:0106345 glyoxylate reductase activity 0.9% (2/223) 5.2 0.00142 0.01198
GO:0030267 glyoxylate reductase (NADP+) activity 0.9% (2/223) 5.2 0.00142 0.01198
GO:0016042 lipid catabolic process 1.79% (4/223) 3.07 0.001449 0.012071
GO:0003674 molecular_function 45.29% (101/223) 0.36 0.001401 0.012125
GO:0009585 red, far-red light phototransduction 0.45% (1/223) 9.4 0.001484 0.012212
GO:0051248 negative regulation of protein metabolic process 1.35% (3/223) 3.68 0.001754 0.014265
GO:0007602 phototransduction 0.45% (1/223) 9.07 0.001854 0.014899
GO:0004329 formate-tetrahydrofolate ligase activity 0.45% (1/223) 8.81 0.002224 0.01746
GO:0010387 COP9 signalosome assembly 0.45% (1/223) 8.81 0.002224 0.01746
GO:0010027 thylakoid membrane organization 0.9% (2/223) 4.85 0.002279 0.017479
GO:0009668 plastid membrane organization 0.9% (2/223) 4.85 0.002279 0.017479
GO:0019359 nicotinamide nucleotide biosynthetic process 0.9% (2/223) 4.8 0.002424 0.018385
GO:0009808 lignin metabolic process 0.9% (2/223) 4.77 0.002523 0.018926
GO:0019363 pyridine nucleotide biosynthetic process 0.9% (2/223) 4.76 0.002574 0.019092
GO:0016787 hydrolase activity 10.31% (23/223) 0.91 0.002886 0.021174
GO:0017025 TBP-class protein binding 0.9% (2/223) 4.65 0.002994 0.021498
GO:0048578 positive regulation of long-day photoperiodism, flowering 0.45% (1/223) 8.4 0.002965 0.021519
GO:0045038 protein import into chloroplast thylakoid membrane 0.45% (1/223) 8.23 0.003335 0.023695
GO:0090576 RNA polymerase III transcription regulator complex 0.9% (2/223) 4.49 0.00371 0.026083
GO:0009733 response to auxin 0.9% (2/223) 4.47 0.003831 0.026658
GO:0048582 positive regulation of post-embryonic development 0.45% (1/223) 7.94 0.004074 0.028064
GO:0009699 phenylpropanoid biosynthetic process 0.9% (2/223) 4.4 0.004174 0.028456
GO:0010608 post-transcriptional regulation of gene expression 1.79% (4/223) 2.62 0.004421 0.02984
GO:0072525 pyridine-containing compound biosynthetic process 0.9% (2/223) 4.32 0.00463 0.030637
GO:0031323 regulation of cellular metabolic process 7.17% (16/223) 1.07 0.004607 0.030788
GO:0006739 NADP metabolic process 0.9% (2/223) 4.3 0.004798 0.031442
GO:0140296 general transcription initiation factor binding 0.9% (2/223) 4.27 0.005003 0.032474
GO:0009628 response to abiotic stimulus 1.79% (4/223) 2.54 0.005242 0.033066
GO:0070897 transcription preinitiation complex assembly 0.9% (2/223) 4.22 0.005319 0.033244
GO:0009535 chloroplast thylakoid membrane 1.35% (3/223) 3.12 0.005234 0.033328
GO:0055035 plastid thylakoid membrane 1.35% (3/223) 3.12 0.005234 0.033328
GO:0019433 triglyceride catabolic process 0.45% (1/223) 7.49 0.005552 0.034382
GO:0009881 photoreceptor activity 0.45% (1/223) 7.4 0.005921 0.036334
GO:0046464 acylglycerol catabolic process 0.45% (1/223) 7.31 0.00629 0.037243
GO:0046461 neutral lipid catabolic process 0.45% (1/223) 7.31 0.00629 0.037243
GO:0004438 phosphatidylinositol-3-phosphate phosphatase activity 0.45% (1/223) 7.31 0.00629 0.037243
GO:0006383 transcription by RNA polymerase III 0.9% (2/223) 4.09 0.006358 0.03732
GO:0019222 regulation of metabolic process 7.17% (16/223) 1.02 0.006175 0.037551
GO:0034357 photosynthetic membrane 1.35% (3/223) 3.0 0.00658 0.03764
GO:0042651 thylakoid membrane 1.35% (3/223) 3.0 0.00658 0.03764
GO:0009698 phenylpropanoid metabolic process 0.9% (2/223) 4.07 0.006553 0.03813
GO:0035434 copper ion transmembrane transport 0.45% (1/223) 7.15 0.007027 0.039861
GO:0004497 monooxygenase activity 2.69% (6/223) 1.83 0.007431 0.041453
GO:0006825 copper ion transport 0.45% (1/223) 7.07 0.007396 0.041601
GO:0140223 general transcription initiation factor activity 0.9% (2/223) 3.94 0.007734 0.04244
GO:0065003 protein-containing complex assembly 2.24% (5/223) 2.05 0.007692 0.042558
GO:0008465 glycerate dehydrogenase activity 0.45% (1/223) 6.94 0.008132 0.043223
GO:0003839 gamma-glutamylcyclotransferase activity 0.45% (1/223) 6.94 0.008132 0.043223
GO:0005506 iron ion binding 2.69% (6/223) 1.81 0.007943 0.04324
GO:0043565 sequence-specific DNA binding 3.14% (7/223) 1.64 0.008028 0.04335
GO:0010242 oxygen evolving activity 0.45% (1/223) 6.81 0.008868 0.043695
GO:0043291 RAVE complex 0.45% (1/223) 6.81 0.008868 0.043695
GO:0055075 potassium ion homeostasis 0.45% (1/223) 6.81 0.008868 0.043695
GO:0009725 response to hormone 1.35% (3/223) 2.86 0.008502 0.043809
GO:0051094 positive regulation of developmental process 0.45% (1/223) 6.87 0.0085 0.044137
GO:0051240 positive regulation of multicellular organismal process 0.45% (1/223) 6.87 0.0085 0.044137
GO:0061928 glutathione specific gamma-glutamylcyclotransferase activity 0.45% (1/223) 6.87 0.0085 0.044137
GO:0009579 thylakoid 0.9% (2/223) 3.84 0.008822 0.044442
GO:0009532 plastid stroma 1.35% (3/223) 2.85 0.008774 0.044528
GO:0009570 chloroplast stroma 1.35% (3/223) 2.85 0.008774 0.044528
GO:0046872 metal ion binding 6.28% (14/223) 1.04 0.009244 0.045213
GO:0050794 regulation of cellular process 8.97% (20/223) 0.83 0.00959 0.04657
GO:0051246 regulation of protein metabolic process 1.79% (4/223) 2.28 0.009783 0.047169
GO:0010468 regulation of gene expression 6.28% (14/223) 1.03 0.009981 0.047781
GO:0042592 homeostatic process 1.79% (4/223) 2.26 0.010206 0.048514
GO:0008134 transcription factor binding 0.9% (2/223) 3.72 0.010358 0.048893
GO:0010556 regulation of macromolecule biosynthetic process 6.28% (14/223) 1.02 0.01054 0.049406
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (223) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms