Coexpression cluster: Cluster_2793 (Co-expression clusters of Correr et al 2020 (PRJEB38368))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009691 cytokinin biosynthetic process 2.17% (2/92) 6.91 0.000135 0.014131
GO:0042446 hormone biosynthetic process 2.17% (2/92) 6.53 0.000226 0.017715
GO:0009308 amine metabolic process 3.26% (3/92) 4.59 0.000285 0.017914
GO:0009690 cytokinin metabolic process 2.17% (2/92) 6.07 0.00043 0.019296
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 4.35% (4/92) 4.0 0.000127 0.019889
GO:0006357 regulation of transcription by RNA polymerase II 5.43% (5/92) 3.04 0.00039 0.020386
GO:0008792 arginine decarboxylase activity 1.09% (1/92) 9.67 0.001224 0.025625
GO:1990837 sequence-specific double-stranded DNA binding 4.35% (4/92) 3.14 0.00116 0.026024
GO:0045944 positive regulation of transcription by RNA polymerase II 3.26% (3/92) 4.16 0.000671 0.026353
GO:0000987 cis-regulatory region sequence-specific DNA binding 3.26% (3/92) 3.81 0.001349 0.026482
GO:0016829 lyase activity 4.35% (4/92) 3.05 0.001482 0.027366
GO:0016830 carbon-carbon lyase activity 3.26% (3/92) 3.98 0.000967 0.02759
GO:0000976 transcription cis-regulatory region binding 4.35% (4/92) 3.25 0.000881 0.027654
GO:0001067 transcription regulatory region nucleic acid binding 4.35% (4/92) 3.25 0.000881 0.027654
GO:0046983 protein dimerization activity 4.35% (4/92) 3.14 0.001156 0.027922
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 3.26% (3/92) 3.9 0.001128 0.02952
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific 4.35% (4/92) 4.08 0.0001 0.031502
GO:0006527 arginine catabolic process 1.09% (1/92) 8.77 0.002294 0.040018
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 3.26% (3/92) 3.05 0.005947 0.043428
GO:2001141 regulation of RNA biosynthetic process 7.61% (7/92) 1.7 0.005896 0.044081
GO:0006355 regulation of DNA-templated transcription 7.61% (7/92) 1.7 0.005896 0.044081
GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds 2.17% (2/92) 4.17 0.005647 0.044332
GO:0009891 positive regulation of biosynthetic process 3.26% (3/92) 3.09 0.005511 0.044367
GO:0010557 positive regulation of macromolecule biosynthetic process 3.26% (3/92) 3.09 0.005511 0.044367
GO:0031328 positive regulation of cellular biosynthetic process 3.26% (3/92) 3.09 0.005511 0.044367
GO:1901605 alpha-amino acid metabolic process 3.26% (3/92) 2.99 0.006578 0.044899
GO:0016831 carboxy-lyase activity 2.17% (2/92) 4.07 0.006487 0.045265
GO:1901606 alpha-amino acid catabolic process 2.17% (2/92) 4.07 0.006471 0.04618
GO:0042445 hormone metabolic process 2.17% (2/92) 4.54 0.003469 0.047353
GO:0004419 hydroxymethylglutaryl-CoA lyase activity 1.09% (1/92) 7.5 0.005497 0.047945
GO:0046951 ketone body biosynthetic process 1.09% (1/92) 7.5 0.005497 0.047945
GO:1902224 ketone body metabolic process 1.09% (1/92) 7.5 0.005497 0.047945
GO:0046950 cellular ketone body metabolic process 1.09% (1/92) 7.5 0.005497 0.047945
GO:0010218 response to far red light 1.09% (1/92) 7.97 0.003973 0.047981
GO:0071489 cellular response to red or far red light 1.09% (1/92) 7.97 0.003973 0.047981
GO:0010017 red or far-red light signaling pathway 1.09% (1/92) 7.97 0.003973 0.047981
GO:0008295 spermidine biosynthetic process 1.09% (1/92) 8.21 0.003363 0.047996
GO:0008216 spermidine metabolic process 1.09% (1/92) 8.21 0.003363 0.047996
GO:0010099 regulation of photomorphogenesis 1.09% (1/92) 7.06 0.007474 0.048896
GO:0051252 regulation of RNA metabolic process 7.61% (7/92) 1.63 0.007665 0.049117
GO:0045893 positive regulation of DNA-templated transcription 3.26% (3/92) 3.38 0.003139 0.049281
GO:1902680 positive regulation of RNA biosynthetic process 3.26% (3/92) 3.38 0.003139 0.049281
GO:0009063 amino acid catabolic process 2.17% (2/92) 3.97 0.00738 0.049304
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (92) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms