Coexpression cluster: Cluster_2844 (Co-expression clusters of Correr et al 2020 (PRJEB38368))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0140513 nuclear protein-containing complex 12.33% (9/73) 3.05 1e-06 0.000424
GO:0005575 cellular_component 45.21% (33/73) 1.18 1e-06 0.000569
GO:0032991 protein-containing complex 19.18% (14/73) 2.05 6e-06 0.001091
GO:0046483 heterocycle metabolic process 19.18% (14/73) 1.93 1.5e-05 0.001399
GO:0006139 nucleobase-containing compound metabolic process 17.81% (13/73) 1.92 3.3e-05 0.001439
GO:0006807 nitrogen compound metabolic process 30.14% (22/73) 1.32 3.2e-05 0.001526
GO:0016070 RNA metabolic process 13.7% (10/73) 2.5 1.1e-05 0.001543
GO:0016073 snRNA metabolic process 4.11% (3/73) 6.05 1.4e-05 0.00161
GO:0090304 nucleic acid metabolic process 16.44% (12/73) 2.04 3.1e-05 0.001618
GO:0006396 RNA processing 9.59% (7/73) 2.99 3e-05 0.001694
GO:0034641 cellular nitrogen compound metabolic process 19.18% (14/73) 1.84 2.9e-05 0.001809
GO:1903311 regulation of mRNA metabolic process 4.11% (3/73) 5.48 4.6e-05 0.001884
GO:1902494 catalytic complex 10.96% (8/73) 2.74 2.7e-05 0.00193
GO:1901360 organic cyclic compound metabolic process 19.18% (14/73) 1.85 2.6e-05 0.002129
GO:0016078 tRNA catabolic process 2.74% (2/73) 7.02 0.000115 0.00262
GO:0106354 tRNA surveillance 2.74% (2/73) 7.02 0.000115 0.00262
GO:0043633 polyadenylation-dependent RNA catabolic process 2.74% (2/73) 7.02 0.000115 0.00262
GO:0071038 nuclear polyadenylation-dependent tRNA catabolic process 2.74% (2/73) 7.02 0.000115 0.00262
GO:0071035 nuclear polyadenylation-dependent rRNA catabolic process 2.74% (2/73) 7.02 0.000115 0.00262
GO:0071029 nuclear ncRNA surveillance 2.74% (2/73) 7.02 0.000115 0.00262
GO:0071046 nuclear polyadenylation-dependent ncRNA catabolic process 2.74% (2/73) 7.02 0.000115 0.00262
GO:0043634 polyadenylation-dependent ncRNA catabolic process 2.74% (2/73) 7.02 0.000115 0.00262
GO:0043170 macromolecule metabolic process 27.4% (20/73) 1.33 7.5e-05 0.002829
GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.74% (2/73) 6.92 0.000132 0.002888
GO:0006725 cellular aromatic compound metabolic process 17.81% (13/73) 1.79 8.4e-05 0.002978
GO:0031125 rRNA 3'-end processing 2.74% (2/73) 6.85 0.000146 0.003074
GO:0009526 plastid envelope 4.11% (3/73) 4.86 0.000162 0.00318
GO:0009941 chloroplast envelope 4.11% (3/73) 4.86 0.000162 0.00318
GO:0034660 ncRNA metabolic process 8.22% (6/73) 3.03 9.8e-05 0.003275
GO:0110165 cellular anatomical entity 35.62% (26/73) 1.01 0.000194 0.003442
GO:0000956 nuclear-transcribed mRNA catabolic process 4.11% (3/73) 4.81 0.000182 0.003448
GO:0034470 ncRNA processing 6.85% (5/73) 3.25 0.000193 0.003529
GO:0005739 mitochondrion 6.85% (5/73) 3.22 0.000211 0.003625
GO:0031123 RNA 3'-end processing 4.11% (3/73) 4.7 0.000226 0.00366
GO:0071027 nuclear RNA surveillance 2.74% (2/73) 6.55 0.000221 0.003694
GO:0071025 RNA surveillance 2.74% (2/73) 6.46 0.000249 0.003936
GO:0016075 rRNA catabolic process 2.74% (2/73) 6.25 0.000335 0.00433
GO:0034661 ncRNA catabolic process 2.74% (2/73) 6.25 0.000335 0.00433
GO:0006402 mRNA catabolic process 4.11% (3/73) 4.49 0.000343 0.00433
GO:0034472 snRNA 3'-end processing 2.74% (2/73) 6.37 0.000282 0.004334
GO:0008152 metabolic process 32.88% (24/73) 1.04 0.000298 0.004458
GO:0031967 organelle envelope 4.11% (3/73) 4.51 0.000333 0.004505
GO:0031975 envelope 4.11% (3/73) 4.51 0.000333 0.004505
GO:0016180 snRNA processing 2.74% (2/73) 6.27 0.000326 0.004632
GO:0000176 nuclear exosome (RNase complex) 2.74% (2/73) 6.27 0.000323 0.004707
GO:0018193 peptidyl-amino acid modification 5.48% (4/73) 3.53 0.000426 0.005264
GO:0044238 primary metabolic process 30.14% (22/73) 1.07 0.000436 0.005271
GO:0000178 exosome (RNase complex) 2.74% (2/73) 5.99 0.000477 0.005639
GO:1905354 exoribonuclease complex 2.74% (2/73) 5.96 0.000499 0.005781
GO:0006399 tRNA metabolic process 5.48% (4/73) 3.45 0.000526 0.00598
GO:0006401 RNA catabolic process 4.11% (3/73) 4.25 0.00056 0.006235
GO:0043488 regulation of mRNA stability 2.74% (2/73) 5.79 0.000625 0.006828
GO:0061013 regulation of mRNA catabolic process 2.74% (2/73) 5.76 0.000655 0.007015
GO:0043226 organelle 20.55% (15/73) 1.33 0.000714 0.007369
GO:0043229 intracellular organelle 20.55% (15/73) 1.33 0.000713 0.007497
GO:0043487 regulation of RNA stability 2.74% (2/73) 5.64 0.00077 0.00781
GO:0016071 mRNA metabolic process 5.48% (4/73) 3.25 0.000879 0.008758
GO:0071704 organic substance metabolic process 30.14% (22/73) 0.98 0.001004 0.009665
GO:0010605 negative regulation of macromolecule metabolic process 5.48% (4/73) 3.2 0.000991 0.009705
GO:0031324 negative regulation of cellular metabolic process 5.48% (4/73) 3.18 0.001051 0.009951
GO:0009892 negative regulation of metabolic process 5.48% (4/73) 3.17 0.001073 0.009987
GO:0003723 RNA binding 9.59% (7/73) 2.12 0.001151 0.010543
GO:0048255 mRNA stabilization 1.37% (1/73) 9.69 0.001214 0.010775
GO:1902373 negative regulation of mRNA catabolic process 1.37% (1/73) 9.69 0.001214 0.010775
GO:0044237 cellular metabolic process 24.66% (18/73) 1.07 0.00161 0.013854
GO:0043231 intracellular membrane-bounded organelle 17.81% (13/73) 1.34 0.001587 0.013866
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 1.37% (1/73) 9.2 0.001699 0.013989
GO:0035060 brahma complex 1.37% (1/73) 9.2 0.001699 0.013989
GO:0043227 membrane-bounded organelle 17.81% (13/73) 1.33 0.001697 0.014386
GO:0061665 SUMO ligase activity 1.37% (1/73) 8.92 0.002063 0.016741
GO:0044070 regulation of monoatomic anion transport 1.37% (1/73) 8.84 0.002184 0.017475
GO:0009987 cellular process 32.88% (24/73) 0.84 0.002235 0.017634
GO:0008150 biological_process 43.84% (32/73) 0.66 0.002434 0.018941
GO:0031329 regulation of cellular catabolic process 2.74% (2/73) 4.72 0.002686 0.020615
GO:0048523 negative regulation of cellular process 5.48% (4/73) 2.8 0.002731 0.020681
GO:0048519 negative regulation of biological process 5.48% (4/73) 2.77 0.00291 0.021745
GO:0006364 rRNA processing 4.11% (3/73) 3.39 0.003022 0.022294
GO:0034655 nucleobase-containing compound catabolic process 4.11% (3/73) 3.35 0.003296 0.023699
GO:1903312 negative regulation of mRNA metabolic process 1.37% (1/73) 8.25 0.003275 0.023847
GO:0010629 negative regulation of gene expression 4.11% (3/73) 3.32 0.003478 0.024692
GO:0016514 SWI/SNF complex 1.37% (1/73) 8.1 0.003638 0.025511
GO:0016072 rRNA metabolic process 4.11% (3/73) 3.28 0.003763 0.026068
GO:0043269 regulation of monoatomic ion transport 1.37% (1/73) 8.01 0.00388 0.026553
GO:0044270 cellular nitrogen compound catabolic process 4.11% (3/73) 3.23 0.004194 0.027699
GO:0046700 heterocycle catabolic process 4.11% (3/73) 3.23 0.004194 0.027699
GO:0019789 SUMO transferase activity 1.37% (1/73) 7.92 0.004122 0.027873
GO:0071042 nuclear polyadenylation-dependent mRNA catabolic process 1.37% (1/73) 7.76 0.004606 0.028749
GO:0034476 U5 snRNA 3'-end processing 1.37% (1/73) 7.76 0.004606 0.028749
GO:0034473 U1 snRNA 3'-end processing 1.37% (1/73) 7.76 0.004606 0.028749
GO:0071047 polyadenylation-dependent mRNA catabolic process 1.37% (1/73) 7.76 0.004606 0.028749
GO:0009057 macromolecule catabolic process 5.48% (4/73) 2.6 0.004424 0.028886
GO:0070150 mitochondrial glycyl-tRNA aminoacylation 1.37% (1/73) 7.69 0.004848 0.02993
GO:0050789 regulation of biological process 13.7% (10/73) 1.37 0.005049 0.030834
GO:0031325 positive regulation of cellular metabolic process 4.11% (3/73) 3.11 0.005247 0.031372
GO:0043489 RNA stabilization 1.37% (1/73) 7.58 0.00521 0.031484
GO:0005656 nuclear pre-replicative complex 1.37% (1/73) 7.52 0.005452 0.031926
GO:0036387 pre-replicative complex 1.37% (1/73) 7.52 0.005452 0.031926
GO:0000338 protein deneddylation 1.37% (1/73) 7.48 0.005573 0.031974
GO:0005634 nucleus 10.96% (8/73) 1.57 0.005531 0.032058
GO:0055035 plastid thylakoid membrane 2.74% (2/73) 4.15 0.005846 0.032238
GO:0009535 chloroplast thylakoid membrane 2.74% (2/73) 4.15 0.005846 0.032238
GO:0018205 peptidyl-lysine modification 2.74% (2/73) 4.15 0.005822 0.03274
GO:1901361 organic cyclic compound catabolic process 4.11% (3/73) 3.03 0.006092 0.032956
GO:0019439 aromatic compound catabolic process 4.11% (3/73) 3.05 0.005809 0.032996
GO:0070127 tRNA aminoacylation for mitochondrial protein translation 1.37% (1/73) 7.36 0.006056 0.033076
GO:0005850 eukaryotic translation initiation factor 2 complex 1.37% (1/73) 7.33 0.006177 0.033099
GO:0016418 S-acetyltransferase activity 1.37% (1/73) 7.01 0.007745 0.03464
GO:0004742 dihydrolipoyllysine-residue acetyltransferase activity 1.37% (1/73) 7.01 0.007745 0.03464
GO:0009890 negative regulation of biosynthetic process 4.11% (3/73) 2.91 0.007637 0.034702
GO:0010556 regulation of macromolecule biosynthetic process 9.59% (7/73) 1.63 0.007586 0.034747
GO:0031327 negative regulation of cellular biosynthetic process 4.11% (3/73) 2.92 0.007549 0.034859
GO:0044272 sulfur compound biosynthetic process 2.74% (2/73) 4.06 0.006568 0.034868
GO:0071036 nuclear polyadenylation-dependent snoRNA catabolic process 1.37% (1/73) 7.05 0.007504 0.034938
GO:0071037 nuclear polyadenylation-dependent snRNA catabolic process 1.37% (1/73) 7.05 0.007504 0.034938
GO:0016077 sno(s)RNA catabolic process 1.37% (1/73) 7.05 0.007504 0.034938
GO:0071039 nuclear polyadenylation-dependent CUT catabolic process 1.37% (1/73) 7.05 0.007504 0.034938
GO:0016076 snRNA catabolic process 1.37% (1/73) 7.05 0.007504 0.034938
GO:0009893 positive regulation of metabolic process 4.11% (3/73) 2.89 0.00795 0.035006
GO:0010604 positive regulation of macromolecule metabolic process 4.11% (3/73) 2.89 0.007937 0.035222
GO:0048522 positive regulation of cellular process 4.11% (3/73) 2.93 0.007331 0.03559
GO:0065007 biological regulation 13.7% (10/73) 1.27 0.008186 0.035768
GO:0042651 thylakoid membrane 2.74% (2/73) 4.03 0.006866 0.035777
GO:0034357 photosynthetic membrane 2.74% (2/73) 4.03 0.006866 0.035777
GO:0010468 regulation of gene expression 9.59% (7/73) 1.64 0.007322 0.035851
GO:0042868 antisense RNA metabolic process 1.37% (1/73) 7.1 0.007263 0.035873
GO:0071044 histone mRNA catabolic process 1.37% (1/73) 7.1 0.007263 0.035873
GO:0071040 nuclear polyadenylation-dependent antisense transcript catabolic process 1.37% (1/73) 7.1 0.007263 0.035873
GO:0071041 antisense RNA transcript catabolic process 1.37% (1/73) 7.1 0.007263 0.035873
GO:0009889 regulation of biosynthetic process 9.59% (7/73) 1.6 0.008351 0.035935
GO:0010558 negative regulation of macromolecule biosynthetic process 4.11% (3/73) 2.96 0.006984 0.036065
GO:0031326 regulation of cellular biosynthetic process 9.59% (7/73) 1.6 0.008319 0.036071
GO:0052381 tRNA dimethylallyltransferase activity 1.37% (1/73) 7.12 0.007142 0.036548
GO:0001731 formation of translation preinitiation complex 1.37% (1/73) 6.82 0.00883 0.036608
GO:0032039 integrator complex 1.37% (1/73) 6.82 0.00883 0.036608
GO:0016925 protein sumoylation 1.37% (1/73) 6.84 0.008709 0.036644
GO:0009894 regulation of catabolic process 2.74% (2/73) 3.83 0.008906 0.036656
GO:0019773 proteasome core complex, alpha-subunit complex 1.37% (1/73) 6.86 0.008589 0.03668
GO:0043687 post-translational protein modification 5.48% (4/73) 2.32 0.008688 0.036825
GO:0031261 DNA replication preinitiation complex 1.37% (1/73) 6.76 0.009191 0.037557
GO:0034755 iron ion transmembrane transport 1.37% (1/73) 6.69 0.009672 0.039242
GO:1902369 negative regulation of RNA catabolic process 1.37% (1/73) 6.65 0.009913 0.039933
GO:0006426 glycyl-tRNA aminoacylation 1.37% (1/73) 6.6 0.010274 0.040245
GO:0001732 formation of cytoplasmic translation initiation complex 1.37% (1/73) 6.6 0.010274 0.040245
GO:0008180 COP9 signalosome 1.37% (1/73) 6.6 0.010274 0.040245
GO:0004820 glycine-tRNA ligase activity 1.37% (1/73) 6.6 0.010274 0.040245
GO:0071043 CUT metabolic process 1.37% (1/73) 6.53 0.010755 0.041275
GO:0071034 CUT catabolic process 1.37% (1/73) 6.53 0.010755 0.041275
GO:0071028 nuclear mRNA surveillance 1.37% (1/73) 6.53 0.010755 0.041275
GO:0050794 regulation of cellular process 12.33% (9/73) 1.29 0.011021 0.041733
GO:0000339 RNA cap binding 1.37% (1/73) 6.5 0.010995 0.041914
GO:0000923 equatorial microtubule organizing center 1.37% (1/73) 6.44 0.011476 0.043167
GO:0000375 RNA splicing, via transesterification reactions 2.74% (2/73) 3.6 0.012009 0.044294
GO:0060255 regulation of macromolecule metabolic process 9.59% (7/73) 1.5 0.012105 0.04436
GO:0005381 iron ion transmembrane transporter activity 1.37% (1/73) 6.38 0.011956 0.044386
GO:0048518 positive regulation of biological process 4.11% (3/73) 2.67 0.011942 0.044626
GO:0042170 plastid membrane 2.74% (2/73) 3.53 0.013158 0.045023
GO:0017196 N-terminal peptidyl-methionine acetylation 1.37% (1/73) 6.31 0.012556 0.045138
GO:0031323 regulation of cellular metabolic process 9.59% (7/73) 1.49 0.012481 0.045153
GO:0000930 gamma-tubulin complex 1.37% (1/73) 6.32 0.012436 0.04528
GO:0045254 pyruvate dehydrogenase complex 1.37% (1/73) 6.24 0.013156 0.045288
GO:0031330 negative regulation of cellular catabolic process 1.37% (1/73) 6.24 0.013156 0.045288
GO:0043928 exonucleolytic catabolism of deadenylated mRNA 1.37% (1/73) 6.24 0.013156 0.045288
GO:0005664 nuclear origin of replication recognition complex 1.37% (1/73) 6.27 0.012916 0.045567
GO:0000808 origin recognition complex 1.37% (1/73) 6.27 0.012916 0.045567
GO:0007020 microtubule nucleation 1.37% (1/73) 6.25 0.013036 0.045706
GO:0043015 gamma-tubulin binding 1.37% (1/73) 6.28 0.012796 0.045712
GO:0009102 biotin biosynthetic process 1.37% (1/73) 6.19 0.013635 0.045828
GO:0006768 biotin metabolic process 1.37% (1/73) 6.19 0.013635 0.045828
GO:0034475 U4 snRNA 3'-end processing 1.37% (1/73) 6.17 0.013755 0.045958
GO:0008334 histone mRNA metabolic process 1.37% (1/73) 6.2 0.013515 0.045969
GO:0051011 microtubule minus-end binding 1.37% (1/73) 6.15 0.013995 0.046215
GO:0005844 polysome 1.37% (1/73) 6.15 0.013995 0.046215
GO:0009895 negative regulation of catabolic process 1.37% (1/73) 6.11 0.014354 0.047128
GO:0019222 regulation of metabolic process 9.59% (7/73) 1.44 0.014625 0.047743
GO:0043023 ribosomal large subunit binding 1.37% (1/73) 6.08 0.014713 0.047755
GO:0018206 peptidyl-methionine modification 1.37% (1/73) 6.06 0.014833 0.047871
GO:0006474 N-terminal protein amino acid acetylation 1.37% (1/73) 6.05 0.014953 0.047984
GO:0031369 translation initiation factor binding 1.37% (1/73) 6.03 0.015192 0.048478
GO:0031968 organelle outer membrane 2.74% (2/73) 3.41 0.015367 0.048763
GO:0035145 exon-exon junction complex 1.37% (1/73) 5.97 0.01579 0.049827
GO:0006384 transcription initiation at RNA polymerase III promoter 1.37% (1/73) 5.96 0.01591 0.049927
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (73) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms