Coexpression cluster: Cluster_4216 (Co-expression clusters of Correr et al 2020 (PRJEB38368))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1990904 ribonucleoprotein complex 14.61% (13/89) 4.09 0.0 0.0
GO:0005575 cellular_component 51.69% (46/89) 1.37 0.0 0.0
GO:0030684 preribosome 7.87% (7/89) 5.0 0.0 1e-06
GO:0022627 cytosolic small ribosomal subunit 5.62% (5/89) 6.44 0.0 1e-06
GO:0110165 cellular anatomical entity 43.82% (39/89) 1.31 0.0 1e-06
GO:0015935 small ribosomal subunit 5.62% (5/89) 6.01 0.0 2e-06
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex 4.49% (4/89) 6.7 0.0 7e-06
GO:0032991 protein-containing complex 20.22% (18/89) 2.13 0.0 9e-06
GO:1901566 organonitrogen compound biosynthetic process 11.24% (10/89) 3.18 0.0 1.3e-05
GO:0009058 biosynthetic process 16.85% (15/89) 2.29 0.0 2.5e-05
GO:0006412 translation 6.74% (6/89) 4.36 1e-06 3.2e-05
GO:0043043 peptide biosynthetic process 6.74% (6/89) 4.24 1e-06 4.9e-05
GO:0044271 cellular nitrogen compound biosynthetic process 11.24% (10/89) 2.89 1e-06 5.4e-05
GO:1901576 organic substance biosynthetic process 15.73% (14/89) 2.26 1e-06 5.5e-05
GO:0044391 ribosomal subunit 5.62% (5/89) 4.68 2e-06 7.4e-05
GO:0009059 macromolecule biosynthetic process 10.11% (9/89) 3.0 2e-06 7.6e-05
GO:0000028 ribosomal small subunit assembly 3.37% (3/89) 6.95 2e-06 7.7e-05
GO:0031428 box C/D RNP complex 3.37% (3/89) 6.99 2e-06 7.9e-05
GO:0006518 peptide metabolic process 6.74% (6/89) 3.98 3e-06 8.5e-05
GO:0044249 cellular biosynthetic process 14.61% (13/89) 2.28 3e-06 8.6e-05
GO:0005840 ribosome 5.62% (5/89) 4.5 3e-06 9.7e-05
GO:0043604 amide biosynthetic process 6.74% (6/89) 3.84 4e-06 0.000126
GO:0043226 organelle 23.6% (21/89) 1.53 8e-06 0.000181
GO:0032040 small-subunit processome 4.49% (4/89) 5.08 7e-06 0.000182
GO:0003735 structural constituent of ribosome 5.62% (5/89) 4.28 7e-06 0.000188
GO:0043229 intracellular organelle 23.6% (21/89) 1.53 8e-06 0.000188
GO:0009987 cellular process 38.2% (34/89) 1.05 1e-05 0.000224
GO:0006807 nitrogen compound metabolic process 29.21% (26/89) 1.28 1.2e-05 0.000259
GO:0008150 biological_process 49.44% (44/89) 0.83 1.3e-05 0.000261
GO:0008152 metabolic process 34.83% (31/89) 1.12 1.2e-05 0.000261
GO:0043228 non-membrane-bounded organelle 8.99% (8/89) 2.85 1.7e-05 0.000332
GO:0043232 intracellular non-membrane-bounded organelle 8.99% (8/89) 2.85 1.7e-05 0.000342
GO:0034641 cellular nitrogen compound metabolic process 17.98% (16/89) 1.75 1.9e-05 0.000351
GO:0003674 molecular_function 57.3% (51/89) 0.7 2e-05 0.000361
GO:0043603 amide metabolic process 6.74% (6/89) 3.42 2.3e-05 0.000409
GO:1901564 organonitrogen compound metabolic process 22.47% (20/89) 1.44 3.4e-05 0.000583
GO:0071704 organic substance metabolic process 32.58% (29/89) 1.09 3.6e-05 0.000615
GO:0043170 macromolecule metabolic process 25.84% (23/89) 1.25 6.1e-05 0.001004
GO:0005198 structural molecule activity 5.62% (5/89) 3.56 7.4e-05 0.001149
GO:0030433 ubiquitin-dependent ERAD pathway 3.37% (3/89) 5.26 7.3e-05 0.001165
GO:0036503 ERAD pathway 3.37% (3/89) 5.04 0.000114 0.001735
GO:0022613 ribonucleoprotein complex biogenesis 3.37% (3/89) 4.96 0.000135 0.002001
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 4.49% (4/89) 3.92 0.000153 0.002225
GO:0003723 RNA binding 10.11% (9/89) 2.2 0.000159 0.002248
GO:0010243 response to organonitrogen compound 3.37% (3/89) 4.82 0.000179 0.002488
GO:0044237 cellular metabolic process 25.84% (23/89) 1.14 0.000188 0.002555
GO:0010498 proteasomal protein catabolic process 4.49% (4/89) 3.79 0.00022 0.002922
GO:0044238 primary metabolic process 29.21% (26/89) 1.02 0.000241 0.003131
GO:0043628 regulatory ncRNA 3'-end processing 2.25% (2/89) 6.45 0.000252 0.003142
GO:0031126 sno(s)RNA 3'-end processing 2.25% (2/89) 6.45 0.000252 0.003142
GO:0051603 proteolysis involved in protein catabolic process 5.62% (5/89) 3.15 0.000272 0.003144
GO:0016074 sno(s)RNA metabolic process 2.25% (2/89) 6.4 0.000272 0.003199
GO:1901698 response to nitrogen compound 3.37% (3/89) 4.62 0.000268 0.003217
GO:0043144 sno(s)RNA processing 2.25% (2/89) 6.42 0.000265 0.003242
GO:0030163 protein catabolic process 4.49% (4/89) 3.66 0.000304 0.003449
GO:0031090 organelle membrane 6.74% (6/89) 2.73 0.000315 0.003513
GO:0051082 unfolded protein binding 3.37% (3/89) 4.5 0.000342 0.003745
GO:0034976 response to endoplasmic reticulum stress 3.37% (3/89) 4.39 0.000424 0.004564
GO:0016556 mRNA modification 2.25% (2/89) 6.06 0.000432 0.004568
GO:0015450 protein-transporting ATPase activity 1.12% (1/89) 11.14 0.000444 0.00462
GO:1901565 organonitrogen compound catabolic process 5.62% (5/89) 2.87 0.00065 0.006645
GO:0022618 protein-RNA complex assembly 3.37% (3/89) 4.11 0.00074 0.007327
GO:0002181 cytoplasmic translation 2.25% (2/89) 5.68 0.000729 0.007334
GO:0006511 ubiquitin-dependent protein catabolic process 4.49% (4/89) 3.31 0.000764 0.007453
GO:0071826 protein-RNA complex organization 3.37% (3/89) 4.07 0.000807 0.007747
GO:0042254 ribosome biogenesis 2.25% (2/89) 5.56 0.00086 0.008131
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 3.37% (3/89) 4.0 0.000932 0.008678
GO:0019941 modification-dependent protein catabolic process 4.49% (4/89) 3.17 0.001084 0.009949
GO:0034963 box C/D RNA processing 1.12% (1/89) 9.55 0.001332 0.010391
GO:0036009 protein-glutamine N-methyltransferase activity 1.12% (1/89) 9.55 0.001332 0.010391
GO:0000495 box H/ACA RNA 3'-end processing 1.12% (1/89) 9.55 0.001332 0.010391
GO:0140940 histone H2A methyltransferase activity 1.12% (1/89) 9.55 0.001332 0.010391
GO:0034964 box H/ACA RNA processing 1.12% (1/89) 9.55 0.001332 0.010391
GO:1990259 histone H2AQ104 methyltransferase activity 1.12% (1/89) 9.55 0.001332 0.010391
GO:1990190 peptide-glutamate-alpha-N-acetyltransferase activity 1.12% (1/89) 9.55 0.001332 0.010391
GO:0033967 box C/D RNA metabolic process 1.12% (1/89) 9.55 0.001332 0.010391
GO:0033979 box H/ACA RNA metabolic process 1.12% (1/89) 9.55 0.001332 0.010391
GO:0000494 box C/D RNA 3'-end processing 1.12% (1/89) 9.55 0.001332 0.010391
GO:0005789 endoplasmic reticulum membrane 3.37% (3/89) 3.88 0.001167 0.010557
GO:0065003 protein-containing complex assembly 4.49% (4/89) 3.05 0.001447 0.011148
GO:0043632 modification-dependent macromolecule catabolic process 4.49% (4/89) 3.11 0.001262 0.011246
GO:0003824 catalytic activity 31.46% (28/89) 0.8 0.001625 0.012367
GO:0033389 putrescine biosynthetic process from arginine, using agmatinase 1.12% (1/89) 9.14 0.001776 0.013036
GO:0008783 agmatinase activity 1.12% (1/89) 9.14 0.001776 0.013036
GO:0019538 protein metabolic process 15.73% (14/89) 1.28 0.001762 0.01325
GO:0030686 90S preribosome 2.25% (2/89) 4.97 0.001937 0.013431
GO:0005654 nucleoplasm 2.25% (2/89) 4.97 0.001928 0.01352
GO:0030515 snoRNA binding 2.25% (2/89) 4.97 0.001928 0.01352
GO:1905202 methylcrotonoyl-CoA carboxylase complex 1.12% (1/89) 9.02 0.001924 0.013797
GO:0000154 rRNA modification 2.25% (2/89) 4.98 0.001911 0.013865
GO:0001650 fibrillar center 1.12% (1/89) 8.91 0.002071 0.014204
GO:0034660 ncRNA metabolic process 5.62% (5/89) 2.48 0.002106 0.014287
GO:0031415 NatA complex 1.12% (1/89) 8.81 0.002219 0.014891
GO:0006457 protein folding 3.37% (3/89) 3.5 0.00246 0.016333
GO:0003938 IMP dehydrogenase activity 1.12% (1/89) 8.55 0.002663 0.017489
GO:0009064 glutamine family amino acid metabolic process 2.25% (2/89) 4.7 0.002784 0.017728
GO:0031969 chloroplast membrane 2.25% (2/89) 4.71 0.002732 0.01776
GO:0044085 cellular component biogenesis 3.37% (3/89) 3.44 0.002783 0.0179
GO:0016874 ligase activity 4.49% (4/89) 2.78 0.002895 0.018246
GO:0031120 snRNA pseudouridine synthesis 1.12% (1/89) 8.4 0.002958 0.018458
GO:0033388 putrescine biosynthetic process from arginine 1.12% (1/89) 8.26 0.003253 0.019902
GO:0045901 positive regulation of translational elongation 1.12% (1/89) 8.26 0.003253 0.019902
GO:0031429 box H/ACA snoRNP complex 1.12% (1/89) 8.2 0.003401 0.020405
GO:0072588 box H/ACA RNP complex 1.12% (1/89) 8.2 0.003401 0.020405
GO:1990189 peptide-serine-alpha-N-acetyltransferase activity 1.12% (1/89) 8.14 0.003549 0.021088
GO:0005730 nucleolus 3.37% (3/89) 3.27 0.003834 0.022569
GO:0140098 catalytic activity, acting on RNA 5.62% (5/89) 2.27 0.00395 0.022822
GO:0034470 ncRNA processing 4.49% (4/89) 2.64 0.004024 0.022826
GO:0019866 organelle inner membrane 2.25% (2/89) 4.44 0.003922 0.02287
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides 2.25% (2/89) 4.42 0.004083 0.022952
GO:0070918 regulatory ncRNA processing 2.25% (2/89) 4.43 0.00402 0.023016
GO:0005509 calcium ion binding 3.37% (3/89) 3.17 0.004714 0.026262
GO:0010033 response to organic substance 3.37% (3/89) 3.15 0.004889 0.026997
GO:0015245 fatty acid transmembrane transporter activity 1.12% (1/89) 7.63 0.005023 0.027496
GO:0006520 amino acid metabolic process 4.49% (4/89) 2.54 0.005132 0.027847
GO:0006364 rRNA processing 3.37% (3/89) 3.11 0.005269 0.028346
GO:0019401 alditol biosynthetic process 1.12% (1/89) 7.47 0.005613 0.029431
GO:0006114 glycerol biosynthetic process 1.12% (1/89) 7.47 0.005613 0.029431
GO:0043136 glycerol-3-phosphatase activity 1.12% (1/89) 7.47 0.005613 0.029431
GO:0016070 RNA metabolic process 7.87% (7/89) 1.7 0.006035 0.030617
GO:1901605 alpha-amino acid metabolic process 3.37% (3/89) 3.04 0.006002 0.0307
GO:0016651 oxidoreductase activity, acting on NAD(P)H 2.25% (2/89) 4.13 0.005979 0.030835
GO:0022607 cellular component assembly 4.49% (4/89) 2.48 0.005944 0.030907
GO:0043243 positive regulation of protein-containing complex disassembly 1.12% (1/89) 7.33 0.006202 0.030959
GO:0045905 positive regulation of translational termination 1.12% (1/89) 7.33 0.006202 0.030959
GO:0016072 rRNA metabolic process 3.37% (3/89) 3.0 0.006537 0.031378
GO:0006784 heme A biosynthetic process 1.12% (1/89) 7.23 0.006643 0.031404
GO:0046160 heme a metabolic process 1.12% (1/89) 7.23 0.006643 0.031404
GO:0006449 regulation of translational termination 1.12% (1/89) 7.26 0.006496 0.031423
GO:0006448 regulation of translational elongation 1.12% (1/89) 7.26 0.006496 0.031423
GO:0030692 Noc4p-Nop14p complex 1.12% (1/89) 7.26 0.006496 0.031423
GO:0004596 peptide alpha-N-acetyltransferase activity 1.12% (1/89) 7.29 0.006349 0.031442
GO:0001163 RNA polymerase I transcription regulatory region sequence-specific DNA binding 1.12% (1/89) 7.14 0.007085 0.032746
GO:0040031 snRNA modification 1.12% (1/89) 7.14 0.007085 0.032746
GO:0001164 RNA polymerase I core promoter sequence-specific DNA binding 1.12% (1/89) 7.14 0.007085 0.032746
GO:0005750 mitochondrial respiratory chain complex III 1.12% (1/89) 7.08 0.007379 0.033608
GO:0045275 respiratory chain complex III 1.12% (1/89) 7.08 0.007379 0.033608
GO:0005783 endoplasmic reticulum 3.37% (3/89) 2.86 0.008374 0.037863
GO:0006183 GTP biosynthetic process 1.12% (1/89) 6.77 0.009142 0.038029
GO:0046039 GTP metabolic process 1.12% (1/89) 6.77 0.009142 0.038029
GO:1990481 mRNA pseudouridine synthesis 1.12% (1/89) 6.77 0.009142 0.038029
GO:0016787 hydrolase activity 12.36% (11/89) 1.17 0.009454 0.038308
GO:0006542 glutamine biosynthetic process 1.12% (1/89) 6.74 0.009288 0.038383
GO:0004485 methylcrotonoyl-CoA carboxylase activity 1.12% (1/89) 6.86 0.008554 0.038402
GO:0009057 macromolecule catabolic process 4.49% (4/89) 2.31 0.008863 0.038406
GO:0031123 RNA 3'-end processing 2.25% (2/89) 3.83 0.008926 0.038412
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c 1.12% (1/89) 6.79 0.008995 0.038443
GO:0006552 leucine catabolic process 1.12% (1/89) 6.72 0.009435 0.03848
GO:0032468 Golgi calcium ion homeostasis 1.12% (1/89) 6.66 0.009875 0.038513
GO:0071421 manganese ion transmembrane transport 1.12% (1/89) 6.66 0.009875 0.038513
GO:0006828 manganese ion transport 1.12% (1/89) 6.66 0.009875 0.038513
GO:0032472 Golgi calcium ion transport 1.12% (1/89) 6.66 0.009875 0.038513
GO:0140640 catalytic activity, acting on a nucleic acid 6.74% (6/89) 1.74 0.009402 0.038597
GO:0006508 proteolysis 5.62% (5/89) 1.99 0.008853 0.038631
GO:0043231 intracellular membrane-bounded organelle 14.61% (13/89) 1.06 0.009128 0.038746
GO:0009446 putrescine biosynthetic process 1.12% (1/89) 6.81 0.008848 0.038881
GO:0009445 putrescine metabolic process 1.12% (1/89) 6.81 0.008848 0.038881
GO:0042221 response to chemical 3.37% (3/89) 2.78 0.009729 0.038916
GO:0043227 membrane-bounded organelle 14.61% (13/89) 1.05 0.009686 0.038994
GO:0043933 protein-containing complex organization 4.49% (4/89) 2.32 0.00878 0.039134
GO:0016211 ammonia ligase activity 1.12% (1/89) 6.61 0.010168 0.039167
GO:0004356 glutamine synthetase activity 1.12% (1/89) 6.61 0.010168 0.039167
GO:0001046 core promoter sequence-specific DNA binding 1.12% (1/89) 6.49 0.011048 0.04128
GO:0016554 cytidine to uridine editing 1.12% (1/89) 6.49 0.011048 0.04128
GO:0004526 ribonuclease P activity 1.12% (1/89) 6.49 0.011048 0.04128
GO:0031118 rRNA pseudouridine synthesis 1.12% (1/89) 6.49 0.011048 0.04128
GO:0004809 obsolete tRNA (guanine-N2-)-methyltransferase activity 1.12% (1/89) 6.49 0.011048 0.04128
GO:0080156 mitochondrial mRNA modification 1.12% (1/89) 6.42 0.011634 0.04321
GO:0000056 ribosomal small subunit export from nucleus 1.12% (1/89) 6.4 0.01178 0.04324
GO:0005788 endoplasmic reticulum lumen 1.12% (1/89) 6.4 0.01178 0.04324
GO:1900864 mitochondrial RNA modification 1.12% (1/89) 6.35 0.012219 0.044589
GO:0004549 tRNA-specific ribonuclease activity 1.12% (1/89) 6.31 0.012512 0.045129
GO:0031414 N-terminal protein acetyltransferase complex 1.12% (1/89) 6.31 0.012512 0.045129
GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor 1.12% (1/89) 6.25 0.013097 0.046699
GO:0030689 Noc complex 1.12% (1/89) 6.25 0.013097 0.046699
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines 1.12% (1/89) 6.21 0.013389 0.04747
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (89) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms