Coexpression cluster: Cluster_228 (Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0031369 translation initiation factor binding 6.12% (3/49) 8.24 0.0 3.1e-05
GO:0005488 binding 65.31% (32/49) 1.05 1e-06 0.000206
GO:0097159 organic cyclic compound binding 48.98% (24/49) 1.36 2e-06 0.000215
GO:0016070 RNA metabolic process 18.37% (9/49) 2.84 4e-06 0.000296
GO:0016071 mRNA metabolic process 10.2% (5/49) 4.26 6e-06 0.000396
GO:0006413 translational initiation 6.12% (3/49) 5.95 1.6e-05 0.000704
GO:0035639 purine ribonucleoside triphosphate binding 28.57% (14/49) 1.88 1.4e-05 0.000711
GO:0097367 carbohydrate derivative binding 28.57% (14/49) 1.79 2.7e-05 0.000848
GO:0032553 ribonucleotide binding 28.57% (14/49) 1.81 2.5e-05 0.000862
GO:0032555 purine ribonucleotide binding 28.57% (14/49) 1.82 2.2e-05 0.00087
GO:0003723 RNA binding 16.33% (8/49) 2.66 3.4e-05 0.000963
GO:0090304 nucleic acid metabolic process 20.41% (10/49) 2.22 4.3e-05 0.001033
GO:0017076 purine nucleotide binding 28.57% (14/49) 1.74 4.1e-05 0.00106
GO:0006139 nucleobase-containing compound metabolic process 22.45% (11/49) 2.05 5e-05 0.001098
GO:0006397 mRNA processing 8.16% (4/49) 4.23 6.3e-05 0.001305
GO:1901265 nucleoside phosphate binding 28.57% (14/49) 1.67 7.2e-05 0.001315
GO:0000166 nucleotide binding 28.57% (14/49) 1.67 7.2e-05 0.001315
GO:0043168 anion binding 28.57% (14/49) 1.66 7.9e-05 0.00136
GO:0140513 nuclear protein-containing complex 10.2% (5/49) 3.45 9.3e-05 0.001518
GO:0097525 spliceosomal snRNP complex 4.08% (2/49) 6.95 0.000117 0.001571
GO:0006725 cellular aromatic compound metabolic process 22.45% (11/49) 1.91 0.000116 0.001631
GO:0046483 heterocycle metabolic process 22.45% (11/49) 1.93 0.000105 0.001632
GO:0036094 small molecule binding 28.57% (14/49) 1.59 0.000127 0.001638
GO:1901360 organic cyclic compound metabolic process 22.45% (11/49) 1.89 0.000137 0.001697
GO:1901363 heterocyclic compound binding 28.57% (14/49) 1.6 0.000115 0.001698
GO:0006457 protein folding 8.16% (4/49) 3.92 0.000144 0.001717
GO:0030532 small nuclear ribonucleoprotein complex 4.08% (2/49) 6.75 0.000157 0.001735
GO:0003743 translation initiation factor activity 6.12% (3/49) 4.86 0.000154 0.001765
GO:0043167 ion binding 34.69% (17/49) 1.33 0.000183 0.00189
GO:0120114 Sm-like protein family complex 4.08% (2/49) 6.65 0.000179 0.001913
GO:0042026 protein refolding 4.08% (2/49) 6.57 0.000203 0.002026
GO:0006396 RNA processing 10.2% (5/49) 3.09 0.000295 0.002858
GO:0003676 nucleic acid binding 26.53% (13/49) 1.55 0.000315 0.002961
GO:0005525 GTP binding 8.16% (4/49) 3.34 0.000664 0.005721
GO:0032561 guanyl ribonucleotide binding 8.16% (4/49) 3.34 0.000664 0.005721
GO:0008135 translation factor activity, RNA binding 6.12% (3/49) 4.1 0.000727 0.005782
GO:0090079 translation regulator activity, nucleic acid binding 6.12% (3/49) 4.1 0.000727 0.005782
GO:0019001 guanyl nucleotide binding 8.16% (4/49) 3.32 0.000696 0.005831
GO:0034641 cellular nitrogen compound metabolic process 22.45% (11/49) 1.63 0.000645 0.005878
GO:0045182 translation regulator activity 6.12% (3/49) 4.03 0.000837 0.006487
GO:0005852 eukaryotic translation initiation factor 3 complex 4.08% (2/49) 5.48 0.000925 0.006824
GO:0005634 nucleus 10.2% (5/49) 2.74 0.000907 0.006857
GO:0022618 protein-RNA complex assembly 4.08% (2/49) 5.41 0.00103 0.007426
GO:1903432 regulation of TORC1 signaling 2.04% (1/49) 9.65 0.001241 0.007692
GO:0000244 spliceosomal tri-snRNP complex assembly 2.04% (1/49) 9.65 0.001241 0.007692
GO:0032008 positive regulation of TOR signaling 2.04% (1/49) 9.65 0.001241 0.007692
GO:0032006 regulation of TOR signaling 2.04% (1/49) 9.65 0.001241 0.007692
GO:1904263 positive regulation of TORC1 signaling 2.04% (1/49) 9.65 0.001241 0.007692
GO:1902533 positive regulation of intracellular signal transduction 2.04% (1/49) 9.65 0.001241 0.007692
GO:0071826 protein-RNA complex organization 4.08% (2/49) 5.33 0.001141 0.008039
GO:0017111 ribonucleoside triphosphate phosphatase activity 10.2% (5/49) 2.6 0.001379 0.00838
GO:0016887 ATP hydrolysis activity 8.16% (4/49) 3.03 0.00145 0.008643
GO:0005575 cellular_component 28.57% (14/49) 1.23 0.001612 0.00943
GO:0005524 ATP binding 20.41% (10/49) 1.55 0.001731 0.009936
GO:0016462 pyrophosphatase activity 10.2% (5/49) 2.49 0.001928 0.010487
GO:0003674 molecular_function 73.47% (36/49) 0.49 0.001911 0.010581
GO:0140098 catalytic activity, acting on RNA 8.16% (4/49) 2.93 0.001878 0.010586
GO:0008152 metabolic process 40.82% (20/49) 0.91 0.002019 0.010791
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 10.2% (5/49) 2.46 0.002085 0.010953
GO:0016817 hydrolase activity, acting on acid anhydrides 10.2% (5/49) 2.45 0.002173 0.011225
GO:0004814 arginine-tRNA ligase activity 2.04% (1/49) 8.65 0.00248 0.011826
GO:0006420 arginyl-tRNA aminoacylation 2.04% (1/49) 8.65 0.00248 0.011826
GO:0070985 transcription factor TFIIK complex 2.04% (1/49) 8.65 0.00248 0.011826
GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity 2.04% (1/49) 8.65 0.00248 0.011826
GO:0032559 adenyl ribonucleotide binding 20.41% (10/49) 1.48 0.002475 0.012577
GO:0008186 ATP-dependent activity, acting on RNA 4.08% (2/49) 4.63 0.002983 0.013403
GO:0003724 RNA helicase activity 4.08% (2/49) 4.63 0.002983 0.013403
GO:0043227 membrane-bounded organelle 10.2% (5/49) 2.35 0.002961 0.013699
GO:0043231 intracellular membrane-bounded organelle 10.2% (5/49) 2.35 0.002961 0.013699
GO:0016874 ligase activity 6.12% (3/49) 3.32 0.0034 0.015056
GO:1990904 ribonucleoprotein complex 6.12% (3/49) 3.3 0.003519 0.015366
GO:0030554 adenyl nucleotide binding 20.41% (10/49) 1.4 0.003767 0.015571
GO:0010647 positive regulation of cell communication 2.04% (1/49) 8.07 0.003717 0.015572
GO:0023056 positive regulation of signaling 2.04% (1/49) 8.07 0.003717 0.015572
GO:0009967 positive regulation of signal transduction 2.04% (1/49) 8.07 0.003717 0.015572
GO:0032991 protein-containing complex 14.29% (7/49) 1.74 0.004586 0.018707
GO:0034660 ncRNA metabolic process 6.12% (3/49) 3.13 0.004954 0.01873
GO:0044237 cellular metabolic process 30.61% (15/49) 1.01 0.004705 0.018941
GO:0032806 carboxy-terminal domain protein kinase complex 2.04% (1/49) 7.65 0.004953 0.018957
GO:0004817 cysteine-tRNA ligase activity 2.04% (1/49) 7.65 0.004953 0.018957
GO:0005675 transcription factor TFIIH holo complex 2.04% (1/49) 7.65 0.004953 0.018957
GO:0006423 cysteinyl-tRNA aminoacylation 2.04% (1/49) 7.65 0.004953 0.018957
GO:0009987 cellular process 40.82% (20/49) 0.79 0.005775 0.020345
GO:0004812 aminoacyl-tRNA ligase activity 4.08% (2/49) 4.15 0.005754 0.020504
GO:0043039 tRNA aminoacylation 4.08% (2/49) 4.15 0.005754 0.020504
GO:0016875 ligase activity, forming carbon-oxygen bonds 4.08% (2/49) 4.15 0.005754 0.020504
GO:0043038 amino acid activation 4.08% (2/49) 4.15 0.005754 0.020504
GO:0006418 tRNA aminoacylation for protein translation 4.08% (2/49) 4.18 0.005511 0.020585
GO:0140640 catalytic activity, acting on a nucleic acid 10.2% (5/49) 2.1 0.005983 0.020839
GO:0006376 mRNA splice site recognition 2.04% (1/49) 7.33 0.006188 0.021313
GO:0000398 mRNA splicing, via spliceosome 4.08% (2/49) 4.07 0.006382 0.021742
GO:0005515 protein binding 24.49% (12/49) 1.12 0.007024 0.023666
GO:0046540 U4/U6 x U5 tri-snRNP complex 2.04% (1/49) 7.07 0.007421 0.024215
GO:0097526 spliceosomal tri-snRNP complex 2.04% (1/49) 7.07 0.007421 0.024215
GO:0005685 U1 snRNP 2.04% (1/49) 7.07 0.007421 0.024215
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 4.08% (2/49) 3.94 0.007588 0.024503
GO:0000375 RNA splicing, via transesterification reactions 4.08% (2/49) 3.87 0.008299 0.026523
GO:0051082 unfolded protein binding 4.08% (2/49) 3.82 0.008888 0.028116
GO:0043229 intracellular organelle 12.24% (6/49) 1.73 0.009114 0.028253
GO:0043226 organelle 12.24% (6/49) 1.73 0.009114 0.028253
GO:0006354 DNA-templated transcription elongation 2.04% (1/49) 6.65 0.009882 0.030035
GO:0006368 transcription elongation by RNA polymerase II 2.04% (1/49) 6.65 0.009882 0.030035
GO:0140101 catalytic activity, acting on a tRNA 4.08% (2/49) 3.67 0.010929 0.032576
GO:0008380 RNA splicing 4.08% (2/49) 3.67 0.010929 0.032576
GO:0003883 CTP synthase activity 2.04% (1/49) 6.2 0.013564 0.040045
GO:0008150 biological_process 53.06% (26/49) 0.52 0.016308 0.046809
GO:0000387 spliceosomal snRNP assembly 2.04% (1/49) 5.95 0.01601 0.046823
GO:0043170 macromolecule metabolic process 26.53% (13/49) 0.91 0.016284 0.047177
GO:0006807 nitrogen compound metabolic process 28.57% (14/49) 0.84 0.018607 0.048883
GO:0046036 CTP metabolic process 2.04% (1/49) 5.75 0.018451 0.048887
GO:0006241 CTP biosynthetic process 2.04% (1/49) 5.75 0.018451 0.048887
GO:0009148 pyrimidine nucleoside triphosphate biosynthetic process 2.04% (1/49) 5.75 0.018451 0.048887
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 2.04% (1/49) 5.75 0.018451 0.048887
GO:0009208 pyrimidine ribonucleoside triphosphate metabolic process 2.04% (1/49) 5.75 0.018451 0.048887
GO:0009209 pyrimidine ribonucleoside triphosphate biosynthetic process 2.04% (1/49) 5.75 0.018451 0.048887
GO:1902554 serine/threonine protein kinase complex 2.04% (1/49) 5.75 0.018451 0.048887
GO:0140994 RNA polymerase II CTD heptapeptide repeat modifying activity 2.04% (1/49) 5.85 0.017231 0.049007
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (49) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms