Coexpression cluster: Cluster_146 (Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003723 RNA binding 19.27% (21/109) 2.9 0.0 0.0
GO:0006396 RNA processing 11.93% (13/109) 3.32 0.0 0.0
GO:0003676 nucleic acid binding 29.36% (32/109) 1.7 0.0 0.0
GO:0016070 RNA metabolic process 14.68% (16/109) 2.52 0.0 2e-06
GO:0090304 nucleic acid metabolic process 18.35% (20/109) 2.07 0.0 4e-06
GO:0005488 binding 55.96% (61/109) 0.82 0.0 8e-06
GO:0005685 U1 snRNP 2.75% (3/109) 7.5 0.0 2.1e-05
GO:0006397 mRNA processing 6.42% (7/109) 3.88 1e-06 2.5e-05
GO:0008380 RNA splicing 5.5% (6/109) 4.1 2e-06 5.6e-05
GO:0006139 nucleobase-containing compound metabolic process 18.35% (20/109) 1.76 2e-06 6.1e-05
GO:0016071 mRNA metabolic process 6.42% (7/109) 3.59 2e-06 6.8e-05
GO:0097159 organic cyclic compound binding 37.61% (41/109) 0.98 4e-06 0.000135
GO:0097525 spliceosomal snRNP complex 2.75% (3/109) 6.39 6e-06 0.00015
GO:0046483 heterocycle metabolic process 18.35% (20/109) 1.64 5e-06 0.00015
GO:0006725 cellular aromatic compound metabolic process 18.35% (20/109) 1.62 6e-06 0.000153
GO:0000398 mRNA splicing, via spliceosome 4.59% (5/109) 4.24 7e-06 0.000168
GO:1901360 organic cyclic compound metabolic process 18.35% (20/109) 1.6 8e-06 0.000178
GO:0030532 small nuclear ribonucleoprotein complex 2.75% (3/109) 6.18 9e-06 0.000185
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 4.59% (5/109) 4.11 1.1e-05 0.000208
GO:0120114 Sm-like protein family complex 2.75% (3/109) 6.09 1.1e-05 0.000215
GO:0000375 RNA splicing, via transesterification reactions 4.59% (5/109) 4.04 1.4e-05 0.000248
GO:0008033 tRNA processing 3.67% (4/109) 4.29 5.4e-05 0.000908
GO:0006376 mRNA splice site recognition 1.83% (2/109) 7.18 7.5e-05 0.001198
GO:0006399 tRNA metabolic process 4.59% (5/109) 3.46 9.9e-05 0.001506
GO:0034641 cellular nitrogen compound metabolic process 18.35% (20/109) 1.34 0.000106 0.001553
GO:0022618 protein-RNA complex assembly 2.75% (3/109) 4.84 0.000161 0.002269
GO:0043170 macromolecule metabolic process 27.52% (30/109) 0.96 0.000192 0.002521
GO:0071826 protein-RNA complex organization 2.75% (3/109) 4.76 0.000187 0.002549
GO:0045292 mRNA cis splicing, via spliceosome 1.83% (2/109) 6.18 0.000335 0.004236
GO:0140513 nuclear protein-containing complex 5.5% (6/109) 2.56 0.000568 0.006948
GO:1990904 ribonucleoprotein complex 4.59% (5/109) 2.89 0.00061 0.007216
GO:0006807 nitrogen compound metabolic process 28.44% (31/109) 0.83 0.000723 0.008297
GO:0034660 ncRNA metabolic process 4.59% (5/109) 2.71 0.001056 0.011739
GO:0034470 ncRNA processing 3.67% (4/109) 3.0 0.001632 0.017614
GO:0005788 endoplasmic reticulum lumen 0.92% (1/109) 8.5 0.00276 0.023553
GO:0003972 RNA ligase (ATP) activity 0.92% (1/109) 8.5 0.00276 0.023553
GO:0010029 regulation of seed germination 0.92% (1/109) 8.5 0.00276 0.023553
GO:0008452 RNA ligase activity 0.92% (1/109) 8.5 0.00276 0.023553
GO:0052917 dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichol alpha-1,6-mannosyltransferase 0.92% (1/109) 8.5 0.00276 0.023553
GO:1900140 regulation of seedling development 0.92% (1/109) 8.5 0.00276 0.023553
GO:0030619 U1 snRNA binding 0.92% (1/109) 8.5 0.00276 0.023553
GO:0080008 Cul4-RING E3 ubiquitin ligase complex 0.92% (1/109) 8.5 0.00276 0.023553
GO:0065003 protein-containing complex assembly 3.67% (4/109) 2.81 0.002609 0.027352
GO:0005515 protein binding 20.18% (22/109) 0.84 0.004678 0.039018
GO:0000151 ubiquitin ligase complex 1.83% (2/109) 4.11 0.006046 0.042668
GO:0044237 cellular metabolic process 24.77% (27/109) 0.71 0.00583 0.042792
GO:0044238 primary metabolic process 29.36% (32/109) 0.63 0.00597 0.042962
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation 0.92% (1/109) 7.5 0.005512 0.043038
GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation 0.92% (1/109) 7.5 0.005512 0.043038
GO:0006914 autophagy 1.83% (2/109) 4.14 0.005768 0.043201
GO:0061919 process utilizing autophagic mechanism 1.83% (2/109) 4.14 0.005768 0.043201
GO:0005681 spliceosomal complex 1.83% (2/109) 4.18 0.005497 0.044827
GO:0032991 protein-containing complex 10.09% (11/109) 1.24 0.007009 0.047637
GO:0140993 histone modifying activity 1.83% (2/109) 4.01 0.006914 0.047877
GO:0003674 molecular_function 64.22% (70/109) 0.3 0.007416 0.049484
GO:0004842 ubiquitin-protein transferase activity 3.67% (4/109) 2.38 0.007592 0.049756
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (109) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms