Coexpression cluster: Cluster_250 (Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005488 binding 61.14% (140/229) 0.95 0.0 0.0
GO:0003676 nucleic acid binding 28.82% (66/229) 1.67 0.0 0.0
GO:0097159 organic cyclic compound binding 37.99% (87/229) 1.0 0.0 0.0
GO:0005515 protein binding 27.07% (62/229) 1.27 0.0 0.0
GO:0016070 RNA metabolic process 11.79% (27/229) 2.2 0.0 0.0
GO:0140640 catalytic activity, acting on a nucleic acid 10.92% (25/229) 2.2 0.0 0.0
GO:0006396 RNA processing 7.42% (17/229) 2.64 0.0 0.0
GO:0003724 RNA helicase activity 3.49% (8/229) 4.41 0.0 0.0
GO:0008186 ATP-dependent activity, acting on RNA 3.49% (8/229) 4.41 0.0 0.0
GO:0090304 nucleic acid metabolic process 13.97% (32/229) 1.67 0.0 0.0
GO:0003723 RNA binding 10.04% (23/229) 1.96 0.0 2e-06
GO:0140513 nuclear protein-containing complex 6.11% (14/229) 2.71 0.0 2e-06
GO:0008270 zinc ion binding 7.42% (17/229) 2.26 0.0 6e-06
GO:0003674 molecular_function 69.0% (158/229) 0.4 0.0 6e-06
GO:0006139 nucleobase-containing compound metabolic process 14.41% (33/229) 1.41 0.0 1.1e-05
GO:0016071 mRNA metabolic process 4.37% (10/229) 3.04 0.0 1.6e-05
GO:0006397 mRNA processing 3.93% (9/229) 3.17 1e-06 2.6e-05
GO:0017056 structural constituent of nuclear pore 2.18% (5/229) 4.75 1e-06 3.4e-05
GO:0004386 helicase activity 5.68% (13/229) 2.42 1e-06 3.5e-05
GO:0140098 catalytic activity, acting on RNA 5.68% (13/229) 2.41 1e-06 3.7e-05
GO:0046483 heterocycle metabolic process 14.41% (33/229) 1.29 2e-06 5e-05
GO:0006725 cellular aromatic compound metabolic process 14.41% (33/229) 1.28 2e-06 5.7e-05
GO:0043167 ion binding 25.33% (58/229) 0.88 2e-06 5.9e-05
GO:1901360 organic cyclic compound metabolic process 14.41% (33/229) 1.25 4e-06 8.2e-05
GO:0006913 nucleocytoplasmic transport 2.62% (6/229) 3.83 4e-06 9.5e-05
GO:0140657 ATP-dependent activity 7.86% (18/229) 1.81 5e-06 0.0001
GO:0051169 nuclear transport 2.62% (6/229) 3.79 5e-06 0.000103
GO:0005634 nucleus 6.11% (14/229) 2.0 1.4e-05 0.000269
GO:0000398 mRNA splicing, via spliceosome 2.62% (6/229) 3.43 2.1e-05 0.0004
GO:0018024 obsolete histone lysine N-methyltransferase activity 1.75% (4/229) 4.52 2.7e-05 0.000486
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 2.62% (6/229) 3.3 3.5e-05 0.000623
GO:0035639 purine ribonucleoside triphosphate binding 15.72% (36/229) 1.02 3.9e-05 0.000665
GO:0000375 RNA splicing, via transesterification reactions 2.62% (6/229) 3.23 4.6e-05 0.00076
GO:0005524 ATP binding 14.41% (33/229) 1.05 5.6e-05 0.000893
GO:0005643 nuclear pore 1.75% (4/229) 4.22 6.3e-05 0.000972
GO:0032774 RNA biosynthetic process 3.93% (9/229) 2.38 6.7e-05 0.001017
GO:0032555 purine ribonucleotide binding 15.72% (36/229) 0.96 9.5e-05 0.001395
GO:0008380 RNA splicing 2.62% (6/229) 3.03 0.000103 0.001468
GO:0032553 ribonucleotide binding 15.72% (36/229) 0.94 0.000115 0.001604
GO:0034641 cellular nitrogen compound metabolic process 14.41% (33/229) 0.99 0.000131 0.001733
GO:0097367 carbohydrate derivative binding 15.72% (36/229) 0.93 0.000135 0.001745
GO:0017076 purine nucleotide binding 16.16% (37/229) 0.92 0.000129 0.001755
GO:0032559 adenyl ribonucleotide binding 14.41% (33/229) 0.98 0.000139 0.001762
GO:0043170 macromolecule metabolic process 23.14% (53/229) 0.71 0.000167 0.002063
GO:0140658 ATP-dependent chromatin remodeler activity 1.75% (4/229) 3.85 0.000175 0.002073
GO:0006405 RNA export from nucleus 1.31% (3/229) 4.77 0.000174 0.002104
GO:0030554 adenyl nucleotide binding 14.85% (34/229) 0.94 0.000186 0.002151
GO:0050658 RNA transport 1.31% (3/229) 4.69 0.000204 0.002218
GO:0051236 establishment of RNA localization 1.31% (3/229) 4.69 0.000204 0.002218
GO:0050657 nucleic acid transport 1.31% (3/229) 4.69 0.000204 0.002218
GO:0043227 membrane-bounded organelle 6.11% (14/229) 1.61 0.000245 0.002559
GO:0043231 intracellular membrane-bounded organelle 6.11% (14/229) 1.61 0.000245 0.002559
GO:0031047 regulatory ncRNA-mediated gene silencing 1.31% (3/229) 4.49 0.000313 0.003209
GO:0051168 nuclear export 1.31% (3/229) 4.43 0.000356 0.003456
GO:0000166 nucleotide binding 16.16% (37/229) 0.84 0.000354 0.003502
GO:1901265 nucleoside phosphate binding 16.16% (37/229) 0.84 0.000354 0.003502
GO:0006357 regulation of transcription by RNA polymerase II 2.62% (6/229) 2.68 0.000383 0.003659
GO:0005665 RNA polymerase II, core complex 0.87% (2/229) 5.85 0.000494 0.004637
GO:0007062 sister chromatid cohesion 1.31% (3/229) 4.26 0.000508 0.00468
GO:0034654 nucleobase-containing compound biosynthetic process 4.37% (10/229) 1.83 0.000576 0.005135
GO:0046914 transition metal ion binding 7.42% (17/229) 1.31 0.000575 0.00521
GO:0004722 protein serine/threonine phosphatase activity 1.75% (4/229) 3.39 0.000599 0.005252
GO:0070063 RNA polymerase binding 0.87% (2/229) 5.62 0.000689 0.005954
GO:1901363 heterocyclic compound binding 16.16% (37/229) 0.78 0.000796 0.006764
GO:0043168 anion binding 15.72% (36/229) 0.79 0.000826 0.006917
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 1.75% (4/229) 3.24 0.000876 0.007219
GO:0036094 small molecule binding 16.16% (37/229) 0.77 0.00094 0.007517
GO:0022402 cell cycle process 2.18% (5/229) 2.75 0.00093 0.007554
GO:0043687 post-translational protein modification 3.49% (8/229) 1.99 0.001033 0.008144
GO:0016570 histone modification 1.75% (4/229) 3.16 0.001069 0.008311
GO:0006351 DNA-templated transcription 2.62% (6/229) 2.39 0.001095 0.008387
GO:0005852 eukaryotic translation initiation factor 3 complex 1.31% (3/229) 3.85 0.001192 0.009009
GO:0034062 5'-3' RNA polymerase activity 1.75% (4/229) 3.04 0.001477 0.010716
GO:0097747 RNA polymerase activity 1.75% (4/229) 3.04 0.001477 0.010716
GO:0045292 mRNA cis splicing, via spliceosome 0.87% (2/229) 5.11 0.001461 0.010884
GO:0065007 biological regulation 12.66% (29/229) 0.85 0.001524 0.010908
GO:0006807 nitrogen compound metabolic process 23.58% (54/229) 0.56 0.001785 0.012139
GO:0045930 negative regulation of mitotic cell cycle 0.87% (2/229) 4.97 0.001778 0.012246
GO:0007093 mitotic cell cycle checkpoint signaling 0.87% (2/229) 4.97 0.001778 0.012246
GO:0006304 DNA modification 0.87% (2/229) 4.97 0.001778 0.012246
GO:0040029 epigenetic regulation of gene expression 1.31% (3/229) 3.59 0.002 0.013435
GO:0051028 mRNA transport 0.87% (2/229) 4.85 0.002126 0.013768
GO:0006406 mRNA export from nucleus 0.87% (2/229) 4.85 0.002126 0.013768
GO:0032991 protein-containing complex 8.73% (20/229) 1.03 0.002094 0.013893
GO:0031048 regulatory ncRNA-mediated heterochromatin formation 0.87% (2/229) 4.73 0.002503 0.015128
GO:0006346 DNA methylation-dependent heterochromatin formation 0.87% (2/229) 4.73 0.002503 0.015128
GO:0080188 gene silencing by RNA-directed DNA methylation 0.87% (2/229) 4.73 0.002503 0.015128
GO:0097525 spliceosomal snRNP complex 0.87% (2/229) 4.73 0.002503 0.015128
GO:0140718 facultative heterochromatin formation 0.87% (2/229) 4.73 0.002503 0.015128
GO:0031323 regulation of cellular metabolic process 9.61% (22/229) 0.95 0.002592 0.015493
GO:0048523 negative regulation of cellular process 2.62% (6/229) 2.15 0.002489 0.015932
GO:0101005 deubiquitinase activity 1.75% (4/229) 2.8 0.002694 0.015932
GO:0019783 ubiquitin-like protein peptidase activity 1.75% (4/229) 2.79 0.002794 0.016344
GO:0031326 regulation of cellular biosynthetic process 9.17% (21/229) 0.94 0.003424 0.01757
GO:0009889 regulation of biosynthetic process 9.17% (21/229) 0.94 0.003424 0.01757
GO:0048519 negative regulation of biological process 2.62% (6/229) 2.06 0.003384 0.017702
GO:0004721 phosphoprotein phosphatase activity 1.75% (4/229) 2.74 0.003108 0.017799
GO:0000075 cell cycle checkpoint signaling 0.87% (2/229) 4.52 0.003344 0.017832
GO:0007064 mitotic sister chromatid cohesion 0.87% (2/229) 4.52 0.003344 0.017832
GO:0010948 negative regulation of cell cycle process 0.87% (2/229) 4.52 0.003344 0.017832
GO:0030532 small nuclear ribonucleoprotein complex 0.87% (2/229) 4.52 0.003344 0.017832
GO:1901988 negative regulation of cell cycle phase transition 0.87% (2/229) 4.52 0.003344 0.017832
GO:0010556 regulation of macromolecule biosynthetic process 9.17% (21/229) 0.94 0.003382 0.017864
GO:0019222 regulation of metabolic process 9.61% (22/229) 0.93 0.003107 0.017982
GO:0018130 heterocycle biosynthetic process 4.37% (10/229) 1.48 0.003556 0.018082
GO:0043412 macromolecule modification 10.92% (25/229) 0.84 0.003649 0.018382
GO:0010468 regulation of gene expression 9.17% (21/229) 0.94 0.003301 0.018511
GO:0019438 aromatic compound biosynthetic process 4.37% (10/229) 1.49 0.003284 0.01861
GO:0015931 nucleobase-containing compound transport 1.31% (3/229) 3.26 0.003837 0.018638
GO:0005694 chromosome 0.87% (2/229) 4.43 0.003807 0.018656
GO:0032784 regulation of DNA-templated transcription elongation 0.87% (2/229) 4.43 0.003807 0.018656
GO:0120114 Sm-like protein family complex 0.87% (2/229) 4.43 0.003807 0.018656
GO:0010629 negative regulation of gene expression 1.75% (4/229) 2.65 0.003933 0.018935
GO:0050789 regulation of biological process 11.79% (27/229) 0.79 0.004113 0.019628
GO:0055029 nuclear DNA-directed RNA polymerase complex 0.87% (2/229) 4.34 0.004298 0.02033
GO:0043169 cation binding 9.61% (22/229) 0.87 0.004866 0.02282
GO:0043229 intracellular organelle 7.42% (17/229) 1.01 0.005318 0.024518
GO:0043226 organelle 7.42% (17/229) 1.01 0.005318 0.024518
GO:0036211 protein modification process 10.04% (23/229) 0.83 0.005364 0.024522
GO:1900150 regulation of defense response to fungus 0.87% (2/229) 4.11 0.005936 0.025628
GO:0000428 DNA-directed RNA polymerase complex 0.87% (2/229) 4.11 0.005936 0.025628
GO:0005682 U5 snRNP 0.44% (1/229) 7.43 0.005798 0.025642
GO:0004712 protein serine/threonine/tyrosine kinase activity 0.44% (1/229) 7.43 0.005798 0.025642
GO:0051304 chromosome separation 0.44% (1/229) 7.43 0.005798 0.025642
GO:0060255 regulation of macromolecule metabolic process 9.17% (21/229) 0.87 0.005717 0.025916
GO:0016579 protein deubiquitination 1.31% (3/229) 3.04 0.005914 0.025943
GO:0007346 regulation of mitotic cell cycle 0.87% (2/229) 4.04 0.006536 0.02735
GO:0046872 metal ion binding 9.17% (21/229) 0.86 0.00642 0.027501
GO:0018193 peptidyl-amino acid modification 1.75% (4/229) 2.44 0.006525 0.027518
GO:1901362 organic cyclic compound biosynthetic process 4.37% (10/229) 1.35 0.006503 0.027639
GO:0030880 RNA polymerase complex 0.87% (2/229) 3.97 0.007162 0.029076
GO:0070646 protein modification by small protein removal 1.31% (3/229) 2.95 0.007014 0.029127
GO:0140097 catalytic activity, acting on DNA 3.49% (8/229) 1.53 0.007095 0.029242
GO:0050794 regulation of cellular process 10.92% (25/229) 0.76 0.007149 0.029243
GO:0045786 negative regulation of cell cycle 0.87% (2/229) 3.91 0.007815 0.030805
GO:0034968 histone lysine methylation 0.87% (2/229) 3.91 0.007815 0.030805
GO:0016571 histone methylation 0.87% (2/229) 3.91 0.007815 0.030805
GO:0016779 nucleotidyltransferase activity 2.18% (5/229) 2.04 0.007797 0.031421
GO:0032101 regulation of response to external stimulus 0.87% (2/229) 3.79 0.009196 0.03548
GO:1901987 regulation of cell cycle phase transition 0.87% (2/229) 3.79 0.009196 0.03548
GO:0002831 regulation of response to biotic stimulus 0.87% (2/229) 3.79 0.009196 0.03548
GO:0031347 regulation of defense response 0.87% (2/229) 3.73 0.009925 0.037755
GO:0004843 cysteine-type deubiquitinase activity 1.31% (3/229) 2.77 0.00991 0.037963
GO:0046982 protein heterodimerization activity 1.75% (4/229) 2.25 0.010295 0.038891
GO:0018022 peptidyl-lysine methylation 0.87% (2/229) 3.68 0.010678 0.040061
GO:0031056 regulation of histone modification 0.44% (1/229) 6.43 0.011562 0.041932
GO:1901983 regulation of protein acetylation 0.44% (1/229) 6.43 0.011562 0.041932
GO:0071013 catalytic step 2 spliceosome 0.44% (1/229) 6.43 0.011562 0.041932
GO:2000756 regulation of peptidyl-lysine acetylation 0.44% (1/229) 6.43 0.011562 0.041932
GO:0035065 regulation of histone acetylation 0.44% (1/229) 6.43 0.011562 0.041932
GO:0006470 protein dephosphorylation 1.31% (3/229) 2.68 0.011776 0.042426
GO:1990234 transferase complex 2.18% (5/229) 1.86 0.012677 0.04537
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (229) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms