Coexpression cluster: Cluster_112 (Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0045944 positive regulation of transcription by RNA polymerase II 10.0% (6/60) 5.78 0.0 0.0
GO:0010557 positive regulation of macromolecule biosynthetic process 10.0% (6/60) 5.22 0.0 0.0
GO:0009891 positive regulation of biosynthetic process 10.0% (6/60) 5.22 0.0 0.0
GO:0031328 positive regulation of cellular biosynthetic process 10.0% (6/60) 5.22 0.0 0.0
GO:0001067 transcription regulatory region nucleic acid binding 10.0% (6/60) 5.47 0.0 0.0
GO:0000976 transcription cis-regulatory region binding 10.0% (6/60) 5.47 0.0 0.0
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 10.0% (6/60) 5.8 0.0 0.0
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 10.0% (6/60) 5.26 0.0 0.0
GO:1990837 sequence-specific double-stranded DNA binding 10.0% (6/60) 5.39 0.0 0.0
GO:1902680 positive regulation of RNA biosynthetic process 10.0% (6/60) 5.28 0.0 0.0
GO:0045893 positive regulation of DNA-templated transcription 10.0% (6/60) 5.28 0.0 0.0
GO:0051254 positive regulation of RNA metabolic process 10.0% (6/60) 5.28 0.0 0.0
GO:0031325 positive regulation of cellular metabolic process 10.0% (6/60) 5.04 0.0 1e-06
GO:0048522 positive regulation of cellular process 10.0% (6/60) 4.94 0.0 1e-06
GO:0010604 positive regulation of macromolecule metabolic process 10.0% (6/60) 4.9 0.0 1e-06
GO:0051173 positive regulation of nitrogen compound metabolic process 10.0% (6/60) 4.9 0.0 1e-06
GO:0009893 positive regulation of metabolic process 10.0% (6/60) 4.87 0.0 1e-06
GO:0003690 double-stranded DNA binding 10.0% (6/60) 4.73 0.0 1e-06
GO:0006357 regulation of transcription by RNA polymerase II 10.0% (6/60) 4.61 0.0 2e-06
GO:0048518 positive regulation of biological process 10.0% (6/60) 4.39 0.0 5e-06
GO:0005634 nucleus 13.33% (8/60) 3.12 4e-06 4.1e-05
GO:0043565 sequence-specific DNA binding 11.67% (7/60) 3.37 5e-06 5.5e-05
GO:0043227 membrane-bounded organelle 13.33% (8/60) 2.73 2.6e-05 0.000251
GO:0043231 intracellular membrane-bounded organelle 13.33% (8/60) 2.73 2.6e-05 0.000251
GO:0003700 DNA-binding transcription factor activity 15.0% (9/60) 2.28 9e-05 0.000832
GO:0050794 regulation of cellular process 21.67% (13/60) 1.75 9.5e-05 0.000852
GO:0140110 transcription regulator activity 15.0% (9/60) 2.19 0.000143 0.001229
GO:0050789 regulation of biological process 21.67% (13/60) 1.66 0.000172 0.001422
GO:0065007 biological regulation 21.67% (13/60) 1.63 0.000222 0.00178
GO:0006355 regulation of DNA-templated transcription 16.67% (10/60) 1.93 0.000252 0.001887
GO:2001141 regulation of RNA biosynthetic process 16.67% (10/60) 1.93 0.000252 0.001887
GO:0051252 regulation of RNA metabolic process 16.67% (10/60) 1.93 0.000262 0.001897
GO:0019219 regulation of nucleobase-containing compound metabolic process 16.67% (10/60) 1.91 0.000283 0.001988
GO:0046983 protein dimerization activity 10.0% (6/60) 2.67 0.000353 0.00241
GO:0031326 regulation of cellular biosynthetic process 16.67% (10/60) 1.8 0.000515 0.002985
GO:0009889 regulation of biosynthetic process 16.67% (10/60) 1.8 0.000515 0.002985
GO:0080090 regulation of primary metabolic process 16.67% (10/60) 1.82 0.000468 0.003014
GO:0051171 regulation of nitrogen compound metabolic process 16.67% (10/60) 1.82 0.000456 0.003022
GO:0010556 regulation of macromolecule biosynthetic process 16.67% (10/60) 1.8 0.00051 0.003116
GO:0010468 regulation of gene expression 16.67% (10/60) 1.81 0.000502 0.003148
GO:0031323 regulation of cellular metabolic process 16.67% (10/60) 1.74 0.00071 0.004017
GO:0060255 regulation of macromolecule metabolic process 16.67% (10/60) 1.74 0.000733 0.004046
GO:0019222 regulation of metabolic process 16.67% (10/60) 1.72 0.000798 0.004303
GO:0043226 organelle 13.33% (8/60) 1.85 0.001593 0.008213
GO:0043229 intracellular organelle 13.33% (8/60) 1.85 0.001593 0.008213
GO:0003677 DNA binding 15.0% (9/60) 1.58 0.002825 0.01425
GO:0003676 nucleic acid binding 20.0% (12/60) 1.14 0.006897 0.034045
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (60) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms