Coexpression cluster: Cluster_139 (Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0019219 regulation of nucleobase-containing compound metabolic process 19.4% (13/67) 2.13 7e-06 0.000112
GO:0003700 DNA-binding transcription factor activity 16.42% (11/67) 2.41 6e-06 0.000114
GO:0051252 regulation of RNA metabolic process 19.4% (13/67) 2.14 6e-06 0.000119
GO:2001141 regulation of RNA biosynthetic process 19.4% (13/67) 2.15 6e-06 0.000124
GO:0006355 regulation of DNA-templated transcription 19.4% (13/67) 2.15 6e-06 0.000124
GO:0050789 regulation of biological process 23.88% (16/67) 1.8 9e-06 0.000136
GO:0019222 regulation of metabolic process 20.9% (14/67) 2.05 5e-06 0.000148
GO:0060255 regulation of macromolecule metabolic process 20.9% (14/67) 2.06 5e-06 0.000149
GO:0031326 regulation of cellular biosynthetic process 20.9% (14/67) 2.13 3e-06 0.000154
GO:0009889 regulation of biosynthetic process 20.9% (14/67) 2.13 3e-06 0.000154
GO:0080090 regulation of primary metabolic process 19.4% (13/67) 2.04 1.3e-05 0.000159
GO:0051171 regulation of nitrogen compound metabolic process 19.4% (13/67) 2.04 1.3e-05 0.000163
GO:0140110 transcription regulator activity 16.42% (11/67) 2.32 1.1e-05 0.000163
GO:0065007 biological regulation 23.88% (16/67) 1.77 1.2e-05 0.000166
GO:0031323 regulation of cellular metabolic process 20.9% (14/67) 2.07 5e-06 0.000166
GO:0050794 regulation of cellular process 23.88% (16/67) 1.89 4e-06 0.000181
GO:0010556 regulation of macromolecule biosynthetic process 20.9% (14/67) 2.13 3e-06 0.000304
GO:0008610 lipid biosynthetic process 8.96% (6/67) 3.28 3.6e-05 0.000419
GO:0010468 regulation of gene expression 20.9% (14/67) 2.13 3e-06 0.000594
GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity 2.99% (2/67) 7.2 7.9e-05 0.000871
GO:0045944 positive regulation of transcription by RNA polymerase II 4.48% (3/67) 4.62 0.000256 0.00257
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 4.48% (3/67) 4.64 0.000246 0.002584
GO:0006633 fatty acid biosynthetic process 4.48% (3/67) 4.3 0.000493 0.004359
GO:0000976 transcription cis-regulatory region binding 4.48% (3/67) 4.31 0.000477 0.004395
GO:0001067 transcription regulatory region nucleic acid binding 4.48% (3/67) 4.31 0.000477 0.004395
GO:1990837 sequence-specific double-stranded DNA binding 4.48% (3/67) 4.23 0.00056 0.00476
GO:0031328 positive regulation of cellular biosynthetic process 4.48% (3/67) 4.06 0.000794 0.005163
GO:0009891 positive regulation of biosynthetic process 4.48% (3/67) 4.06 0.000794 0.005163
GO:0010557 positive regulation of macromolecule biosynthetic process 4.48% (3/67) 4.06 0.000794 0.005163
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 4.48% (3/67) 4.1 0.000731 0.00521
GO:0045893 positive regulation of DNA-templated transcription 4.48% (3/67) 4.12 0.00071 0.005233
GO:1902680 positive regulation of RNA biosynthetic process 4.48% (3/67) 4.12 0.00071 0.005233
GO:0051254 positive regulation of RNA metabolic process 4.48% (3/67) 4.12 0.00071 0.005233
GO:0072330 monocarboxylic acid biosynthetic process 4.48% (3/67) 4.14 0.000671 0.005489
GO:0031325 positive regulation of cellular metabolic process 4.48% (3/67) 3.88 0.001137 0.007179
GO:0010604 positive regulation of macromolecule metabolic process 4.48% (3/67) 3.74 0.001495 0.008471
GO:0051173 positive regulation of nitrogen compound metabolic process 4.48% (3/67) 3.74 0.001495 0.008471
GO:0048522 positive regulation of cellular process 4.48% (3/67) 3.78 0.0014 0.008592
GO:0046394 carboxylic acid biosynthetic process 5.97% (4/67) 2.98 0.001675 0.008611
GO:0016053 organic acid biosynthetic process 5.97% (4/67) 2.98 0.001675 0.008611
GO:0006631 fatty acid metabolic process 4.48% (3/67) 3.75 0.001463 0.008737
GO:0006629 lipid metabolic process 8.96% (6/67) 2.25 0.001626 0.008766
GO:0009893 positive regulation of metabolic process 4.48% (3/67) 3.71 0.001594 0.008808
GO:0003690 double-stranded DNA binding 4.48% (3/67) 3.57 0.002112 0.010608
GO:0006357 regulation of transcription by RNA polymerase II 4.48% (3/67) 3.45 0.002677 0.013145
GO:0044283 small molecule biosynthetic process 5.97% (4/67) 2.63 0.004087 0.018818
GO:0048518 positive regulation of biological process 4.48% (3/67) 3.23 0.004065 0.019114
GO:0046983 protein dimerization activity 7.46% (5/67) 2.25 0.00404 0.019412
GO:0046577 long-chain-alcohol oxidase activity 1.49% (1/67) 7.62 0.00508 0.022913
GO:0005506 iron ion binding 5.97% (4/67) 2.49 0.005655 0.024993
GO:0008289 lipid binding 4.48% (3/67) 3.02 0.006127 0.026552
GO:0033730 arogenate dehydrogenase (NADP+) activity 1.49% (1/67) 7.2 0.006768 0.02671
GO:0004665 prephenate dehydrogenase (NADP+) activity 1.49% (1/67) 7.2 0.006768 0.02671
GO:0006571 tyrosine biosynthetic process 1.49% (1/67) 7.2 0.006768 0.02671
GO:0008977 prephenate dehydrogenase (NAD+) activity 1.49% (1/67) 7.2 0.006768 0.02671
GO:0033731 arogenate dehydrogenase [NAD(P)+] activity 1.49% (1/67) 7.2 0.006768 0.02671
GO:0048523 negative regulation of cellular process 4.48% (3/67) 2.92 0.007354 0.028515
GO:0006570 tyrosine metabolic process 1.49% (1/67) 6.88 0.008453 0.031663
GO:0016491 oxidoreductase activity 11.94% (8/67) 1.46 0.008315 0.031684
GO:0048519 negative regulation of biological process 4.48% (3/67) 2.83 0.008717 0.032108
GO:0004097 catechol oxidase activity 1.49% (1/67) 6.62 0.010135 0.036127
GO:0016151 nickel cation binding 1.49% (1/67) 6.62 0.010135 0.036127
GO:0032787 monocarboxylic acid metabolic process 4.48% (3/67) 2.74 0.010324 0.036215
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific 2.99% (2/67) 3.6 0.011898 0.041084
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (67) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms