Coexpression cluster: Cluster_177 (Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0033014 tetrapyrrole biosynthetic process 6.9% (4/58) 5.99 0.0 0.00015
GO:0033013 tetrapyrrole metabolic process 6.9% (4/58) 5.6 1e-06 0.000221
GO:0010277 chlorophyllide a oxygenase [overall] activity 3.45% (2/58) 8.09 2.1e-05 0.001285
GO:0006779 porphyrin-containing compound biosynthetic process 5.17% (3/58) 5.91 1.7e-05 0.001323
GO:0009765 photosynthesis, light harvesting 5.17% (3/58) 6.0 1.4e-05 0.001465
GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) 3.45% (2/58) 7.83 3.2e-05 0.001604
GO:0006778 porphyrin-containing compound metabolic process 5.17% (3/58) 5.44 4.7e-05 0.002021
GO:0044249 cellular biosynthetic process 18.97% (11/58) 2.02 6.7e-05 0.002565
GO:1901576 organic substance biosynthetic process 18.97% (11/58) 1.9 0.000142 0.003589
GO:0015969 guanosine tetraphosphate metabolic process 3.45% (2/58) 6.83 0.000139 0.003829
GO:0034035 purine ribonucleoside bisphosphate metabolic process 3.45% (2/58) 6.83 0.000139 0.003829
GO:0015995 chlorophyll biosynthetic process 3.45% (2/58) 6.95 0.000116 0.003904
GO:0015994 chlorophyll metabolic process 3.45% (2/58) 6.6 0.000191 0.004459
GO:0009058 biosynthetic process 18.97% (11/58) 1.82 0.000235 0.005101
GO:0018130 heterocycle biosynthetic process 10.34% (6/58) 2.72 0.000296 0.005618
GO:0019438 aromatic compound biosynthetic process 10.34% (6/58) 2.74 0.000278 0.005641
GO:1901362 organic cyclic compound biosynthetic process 10.34% (6/58) 2.59 0.000471 0.008423
GO:0044237 cellular metabolic process 32.76% (19/58) 1.11 0.000627 0.010037
GO:0008152 metabolic process 41.38% (24/58) 0.93 0.000596 0.01006
GO:0046148 pigment biosynthetic process 3.45% (2/58) 5.55 0.000839 0.01159
GO:0009536 plastid 3.45% (2/58) 5.55 0.000839 0.01159
GO:0009507 chloroplast 3.45% (2/58) 5.6 0.000782 0.011881
GO:0003746 translation elongation factor activity 3.45% (2/58) 5.28 0.001222 0.016154
GO:0019156 isoamylase activity 1.72% (1/58) 9.41 0.001468 0.016533
GO:0006437 tyrosyl-tRNA aminoacylation 1.72% (1/58) 9.41 0.001468 0.016533
GO:0019252 starch biosynthetic process 1.72% (1/58) 9.41 0.001468 0.016533
GO:0044281 small molecule metabolic process 12.07% (7/58) 2.07 0.001359 0.017216
GO:0008150 biological_process 56.9% (33/58) 0.62 0.001674 0.018177
GO:0042440 pigment metabolic process 3.45% (2/58) 5.02 0.001757 0.018418
GO:0009987 cellular process 41.38% (24/58) 0.81 0.002118 0.021458
GO:0051537 2 iron, 2 sulfur cluster binding 3.45% (2/58) 4.86 0.002196 0.021531
GO:0006414 translational elongation 3.45% (2/58) 4.77 0.002481 0.02357
GO:0033875 ribonucleoside bisphosphate metabolic process 3.45% (2/58) 4.6 0.003101 0.024812
GO:0033865 nucleoside bisphosphate metabolic process 3.45% (2/58) 4.6 0.003101 0.024812
GO:0034032 purine nucleoside bisphosphate metabolic process 3.45% (2/58) 4.6 0.003101 0.024812
GO:0048529 magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity 1.72% (1/58) 8.41 0.002935 0.02549
GO:0070818 protoporphyrinogen oxidase activity 1.72% (1/58) 8.41 0.002935 0.02549
GO:0004729 oxygen-dependent protoporphyrinogen oxidase activity 1.72% (1/58) 8.41 0.002935 0.02549
GO:0016421 CoA carboxylase activity 1.72% (1/58) 7.83 0.004399 0.029717
GO:0008883 glutamyl-tRNA reductase activity 1.72% (1/58) 7.83 0.004399 0.029717
GO:0008974 phosphoribulokinase activity 1.72% (1/58) 7.83 0.004399 0.029717
GO:0003989 acetyl-CoA carboxylase activity 1.72% (1/58) 7.83 0.004399 0.029717
GO:0005982 starch metabolic process 1.72% (1/58) 7.83 0.004399 0.029717
GO:0004831 tyrosine-tRNA ligase activity 1.72% (1/58) 7.83 0.004399 0.029717
GO:0016885 ligase activity, forming carbon-carbon bonds 1.72% (1/58) 7.83 0.004399 0.029717
GO:0006091 generation of precursor metabolites and energy 5.17% (3/58) 3.04 0.005916 0.035266
GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen 3.45% (2/58) 4.2 0.005348 0.035346
GO:0016874 ligase activity 5.17% (3/58) 3.08 0.005469 0.035372
GO:0051002 ligase activity, forming nitrogen-metal bonds 1.72% (1/58) 7.41 0.005861 0.035635
GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes 1.72% (1/58) 7.41 0.005861 0.035635
GO:0016851 magnesium chelatase activity 1.72% (1/58) 7.41 0.005861 0.035635
GO:0046483 heterocycle metabolic process 15.52% (9/58) 1.4 0.006541 0.038241
GO:0006725 cellular aromatic compound metabolic process 15.52% (9/58) 1.38 0.007001 0.039411
GO:0003824 catalytic activity 43.1% (25/58) 0.66 0.006908 0.039626
GO:0006741 NADP biosynthetic process 1.72% (1/58) 7.09 0.007321 0.040465
GO:0006163 purine nucleotide metabolic process 5.17% (3/58) 2.91 0.007539 0.040926
GO:1901360 organic cyclic compound metabolic process 15.52% (9/58) 1.35 0.00789 0.041356
GO:0006633 fatty acid biosynthetic process 3.45% (2/58) 3.92 0.007812 0.041666
GO:0071704 organic substance metabolic process 34.48% (20/58) 0.76 0.008739 0.042848
GO:0044271 cellular nitrogen compound biosynthetic process 10.34% (6/58) 1.75 0.008649 0.043104
GO:0046872 metal ion binding 13.79% (8/58) 1.45 0.008483 0.043711
GO:0072521 purine-containing compound metabolic process 5.17% (3/58) 2.84 0.008643 0.043792
GO:0072330 monocarboxylic acid biosynthetic process 3.45% (2/58) 3.77 0.009566 0.046158
GO:0004779 sulfate adenylyltransferase activity 1.72% (1/58) 6.6 0.010235 0.047141
GO:0000103 sulfate assimilation 1.72% (1/58) 6.6 0.010235 0.047141
GO:0004781 sulfate adenylyltransferase (ATP) activity 1.72% (1/58) 6.6 0.010235 0.047141
GO:0043169 cation binding 13.79% (8/58) 1.39 0.010583 0.048018
GO:0009117 nucleotide metabolic process 5.17% (3/58) 2.71 0.011029 0.049307
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (58) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms