Coexpression cluster: Cluster_206 (Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0090304 nucleic acid metabolic process 16.59% (34/205) 1.92 0.0 0.0
GO:0003676 nucleic acid binding 24.88% (51/205) 1.46 0.0 0.0
GO:0005488 binding 51.71% (106/205) 0.71 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 17.07% (35/205) 1.66 0.0 0.0
GO:0046483 heterocycle metabolic process 17.07% (35/205) 1.54 0.0 2e-06
GO:0006725 cellular aromatic compound metabolic process 17.07% (35/205) 1.52 0.0 2e-06
GO:1901360 organic cyclic compound metabolic process 17.07% (35/205) 1.49 0.0 3e-06
GO:0006259 DNA metabolic process 8.78% (18/205) 2.24 0.0 5e-06
GO:0034641 cellular nitrogen compound metabolic process 18.54% (38/205) 1.35 0.0 5e-06
GO:0140513 nuclear protein-containing complex 6.34% (13/205) 2.77 0.0 6e-06
GO:0043170 macromolecule metabolic process 27.8% (57/205) 0.98 0.0 1.4e-05
GO:0140640 catalytic activity, acting on a nucleic acid 9.27% (19/205) 1.97 1e-06 2.7e-05
GO:0004518 nuclease activity 4.39% (9/205) 3.16 1e-06 4.3e-05
GO:0097159 organic cyclic compound binding 33.17% (68/205) 0.8 1e-06 4.6e-05
GO:0007017 microtubule-based process 4.39% (9/205) 3.02 2e-06 8.4e-05
GO:0032991 protein-containing complex 12.2% (25/205) 1.51 3e-06 0.000103
GO:1902494 catalytic complex 6.34% (13/205) 2.3 3e-06 0.000109
GO:0005515 protein binding 22.44% (46/205) 0.99 4e-06 0.000126
GO:0022402 cell cycle process 3.41% (7/205) 3.4 5e-06 0.000167
GO:0070603 SWI/SNF superfamily-type complex 1.95% (4/205) 5.01 7e-06 0.000216
GO:0043414 macromolecule methylation 2.93% (6/205) 3.7 7e-06 0.00022
GO:1904949 ATPase complex 1.95% (4/205) 4.95 8e-06 0.000232
GO:0006302 double-strand break repair 1.95% (4/205) 4.89 1e-05 0.000262
GO:0006807 nitrogen compound metabolic process 27.8% (57/205) 0.8 1.2e-05 0.0003
GO:0015631 tubulin binding 3.9% (8/205) 2.93 1.2e-05 0.000302
GO:0006974 DNA damage response 6.34% (13/205) 2.11 1.2e-05 0.000311
GO:0003674 molecular_function 66.83% (137/205) 0.36 1.5e-05 0.000338
GO:0003723 RNA binding 8.29% (17/205) 1.68 2.7e-05 0.000567
GO:0097255 R2TP complex 0.98% (2/205) 7.59 2.7e-05 0.000578
GO:0005575 cellular_component 22.44% (46/205) 0.88 2.7e-05 0.000593
GO:0033554 cellular response to stress 6.34% (13/205) 1.99 3e-05 0.000602
GO:0032259 methylation 2.93% (6/205) 3.32 3.4e-05 0.000655
GO:0051716 cellular response to stimulus 6.34% (13/205) 1.96 3.7e-05 0.000687
GO:1990234 transferase complex 3.9% (8/205) 2.7 3.6e-05 0.000691
GO:0004519 endonuclease activity 2.44% (5/205) 3.7 4.3e-05 0.00075
GO:0000226 microtubule cytoskeleton organization 2.44% (5/205) 3.7 4.3e-05 0.00075
GO:0008092 cytoskeletal protein binding 4.39% (9/205) 2.44 4.8e-05 0.000795
GO:0035267 NuA4 histone acetyltransferase complex 1.46% (3/205) 5.37 4.8e-05 0.000812
GO:0016570 histone modification 2.44% (5/205) 3.65 5.2e-05 0.000817
GO:0006281 DNA repair 5.85% (12/205) 2.01 5.1e-05 0.000818
GO:1902493 acetyltransferase complex 1.95% (4/205) 4.23 6.1e-05 0.000853
GO:0031248 protein acetyltransferase complex 1.95% (4/205) 4.23 6.1e-05 0.000853
GO:0008017 microtubule binding 3.41% (7/205) 2.86 5.7e-05 0.000869
GO:1902562 H4 histone acetyltransferase complex 1.46% (3/205) 5.27 6e-05 0.00087
GO:0043189 H4/H2A histone acetyltransferase complex 1.46% (3/205) 5.27 6e-05 0.00087
GO:0016070 RNA metabolic process 7.8% (16/205) 1.6 8.8e-05 0.001199
GO:0043687 post-translational protein modification 4.39% (9/205) 2.32 9.4e-05 0.001249
GO:0043412 macromolecule modification 13.17% (27/205) 1.11 0.000143 0.001824
GO:0009987 cellular process 35.12% (72/205) 0.57 0.000143 0.001857
GO:0030870 Mre11 complex 0.98% (2/205) 6.59 0.00016 0.00192
GO:0042770 signal transduction in response to DNA damage 0.98% (2/205) 6.59 0.00016 0.00192
GO:0000077 DNA damage checkpoint signaling 0.98% (2/205) 6.59 0.00016 0.00192
GO:0140535 intracellular protein-containing complex 3.9% (8/205) 2.37 0.000183 0.002116
GO:0004540 RNA nuclease activity 2.44% (5/205) 3.27 0.000181 0.002135
GO:0140657 ATP-dependent activity 6.83% (14/205) 1.61 0.000235 0.002676
GO:0043227 membrane-bounded organelle 6.34% (13/205) 1.66 0.000283 0.003106
GO:0043231 intracellular membrane-bounded organelle 6.34% (13/205) 1.66 0.000283 0.003106
GO:0005634 nucleus 5.37% (11/205) 1.81 0.000353 0.003802
GO:0009451 RNA modification 2.93% (6/205) 2.69 0.000362 0.003838
GO:0140098 catalytic activity, acting on RNA 4.39% (9/205) 2.04 0.000398 0.003944
GO:0031570 DNA integrity checkpoint signaling 0.98% (2/205) 6.01 0.000397 0.003998
GO:0031213 RSF complex 0.98% (2/205) 6.01 0.000397 0.003998
GO:0031010 ISWI-type complex 0.98% (2/205) 6.01 0.000397 0.003998
GO:0007010 cytoskeleton organization 2.44% (5/205) 2.99 0.000438 0.004275
GO:0042393 histone binding 1.46% (3/205) 4.32 0.000456 0.004382
GO:0098687 chromosomal region 0.98% (2/205) 5.78 0.000553 0.00524
GO:0003677 DNA binding 10.73% (22/205) 1.1 0.000649 0.006056
GO:0006996 organelle organization 5.37% (11/205) 1.69 0.000707 0.006494
GO:0001510 RNA methylation 1.46% (3/205) 4.09 0.000732 0.006632
GO:0022414 reproductive process 1.95% (4/205) 3.3 0.000745 0.006647
GO:0003697 single-stranded DNA binding 1.46% (3/205) 4.05 0.000798 0.007023
GO:0000123 histone acetyltransferase complex 1.46% (3/205) 4.01 0.000867 0.007526
GO:0140097 catalytic activity, acting on DNA 4.39% (9/205) 1.86 0.000946 0.007992
GO:1903046 meiotic cell cycle process 1.46% (3/205) 3.97 0.00094 0.008047
GO:0042162 telomeric DNA binding 0.98% (2/205) 5.27 0.001174 0.009781
GO:0044238 primary metabolic process 27.8% (57/205) 0.55 0.001379 0.01105
GO:0003777 microtubule motor activity 1.95% (4/205) 3.07 0.001378 0.011188
GO:0007018 microtubule-based movement 1.95% (4/205) 3.07 0.001378 0.011188
GO:0004523 RNA-DNA hybrid ribonuclease activity 0.98% (2/205) 5.01 0.00171 0.013357
GO:1905354 exoribonuclease complex 0.98% (2/205) 5.01 0.00171 0.013357
GO:0004521 RNA endonuclease activity 1.46% (3/205) 3.65 0.001774 0.013691
GO:0033169 histone H3-K9 demethylation 0.98% (2/205) 4.89 0.002014 0.014301
GO:0016577 histone demethylation 0.98% (2/205) 4.89 0.002014 0.014301
GO:0070076 histone lysine demethylation 0.98% (2/205) 4.89 0.002014 0.014301
GO:0032454 histone H3K9 demethylase activity 0.98% (2/205) 4.89 0.002014 0.014301
GO:0032452 histone demethylase activity 0.98% (2/205) 4.89 0.002014 0.014301
GO:0141052 histone H3 demethylase activity 0.98% (2/205) 4.89 0.002014 0.014301
GO:0140457 protein demethylase activity 0.98% (2/205) 4.89 0.002014 0.014301
GO:0006479 protein methylation 1.46% (3/205) 3.56 0.002129 0.014786
GO:0008213 protein alkylation 1.46% (3/205) 3.56 0.002129 0.014786
GO:0005524 ATP binding 12.68% (26/205) 0.87 0.002195 0.015076
GO:0006482 protein demethylation 0.98% (2/205) 4.78 0.002341 0.015734
GO:0008214 protein dealkylation 0.98% (2/205) 4.78 0.002341 0.015734
GO:1901988 negative regulation of cell cycle phase transition 0.98% (2/205) 4.68 0.002692 0.017347
GO:0010948 negative regulation of cell cycle process 0.98% (2/205) 4.68 0.002692 0.017347
GO:0000075 cell cycle checkpoint signaling 0.98% (2/205) 4.68 0.002692 0.017347
GO:0071840 cellular component organization or biogenesis 7.32% (15/205) 1.19 0.002752 0.017554
GO:0008150 biological_process 46.83% (96/205) 0.34 0.002641 0.017559
GO:0003774 cytoskeletal motor activity 1.95% (4/205) 2.76 0.003013 0.019024
GO:1902911 protein kinase complex 0.98% (2/205) 4.59 0.003066 0.019164
GO:0016043 cellular component organization 6.83% (14/205) 1.21 0.003197 0.019782
GO:0007051 spindle organization 0.98% (2/205) 4.5 0.003463 0.021221
GO:0044237 cellular metabolic process 22.44% (46/205) 0.57 0.00357 0.021661
GO:0097346 INO80-type complex 0.98% (2/205) 4.42 0.003883 0.023113
GO:0031011 Ino80 complex 0.98% (2/205) 4.42 0.003883 0.023113
GO:0032559 adenyl ribonucleotide binding 12.68% (26/205) 0.8 0.004185 0.023996
GO:0043229 intracellular organelle 7.8% (16/205) 1.08 0.004182 0.024202
GO:0043226 organelle 7.8% (16/205) 1.08 0.004182 0.024202
GO:0016579 protein deubiquitination 1.46% (3/205) 3.2 0.004352 0.024503
GO:0070988 demethylation 0.98% (2/205) 4.34 0.004325 0.024574
GO:0071704 organic substance metabolic process 28.29% (58/205) 0.47 0.004176 0.024623
GO:0018193 peptidyl-amino acid modification 1.95% (4/205) 2.6 0.00443 0.024723
GO:0043139 5'-3' DNA helicase activity 0.49% (1/205) 7.59 0.00519 0.02616
GO:0000212 meiotic spindle organization 0.49% (1/205) 7.59 0.00519 0.02616
GO:0007095 mitotic G2 DNA damage checkpoint signaling 0.49% (1/205) 7.59 0.00519 0.02616
GO:0030289 protein phosphatase 4 complex 0.49% (1/205) 7.59 0.00519 0.02616
GO:0016633 galactonolactone dehydrogenase activity 0.49% (1/205) 7.59 0.00519 0.02616
GO:0090730 Las1 complex 0.49% (1/205) 7.59 0.00519 0.02616
GO:0030620 U2 snRNA binding 0.49% (1/205) 7.59 0.00519 0.02616
GO:0044773 mitotic DNA damage checkpoint signaling 0.49% (1/205) 7.59 0.00519 0.02616
GO:0016632 oxidoreductase activity, acting on the CH-CH group of donors, cytochrome as acceptor 0.49% (1/205) 7.59 0.00519 0.02616
GO:0006473 protein acetylation 0.98% (2/205) 4.2 0.005275 0.026377
GO:0035639 purine ribonucleoside triphosphate binding 13.17% (27/205) 0.77 0.004802 0.026559
GO:0008094 ATP-dependent activity, acting on DNA 3.41% (7/205) 1.76 0.004908 0.026911
GO:0070646 protein modification by small protein removal 1.46% (3/205) 3.11 0.005171 0.028102
GO:0032451 demethylase activity 0.98% (2/205) 4.13 0.005783 0.028686
GO:0036211 protein modification process 10.24% (21/205) 0.86 0.006066 0.029853
GO:1903293 phosphatase complex 0.98% (2/205) 4.07 0.006312 0.030348
GO:0008287 protein serine/threonine phosphatase complex 0.98% (2/205) 4.07 0.006312 0.030348
GO:0045786 negative regulation of cell cycle 0.98% (2/205) 4.07 0.006312 0.030348
GO:0006913 nucleocytoplasmic transport 1.46% (3/205) 2.99 0.006563 0.031311
GO:0051169 nuclear transport 1.46% (3/205) 2.95 0.007071 0.033482
GO:0043543 protein acylation 0.98% (2/205) 3.95 0.007434 0.034165
GO:1901987 regulation of cell cycle phase transition 0.98% (2/205) 3.95 0.007434 0.034165
GO:0008168 methyltransferase activity 2.93% (6/205) 1.83 0.007361 0.034335
GO:0004843 cysteine-type deubiquitinase activity 1.46% (3/205) 2.93 0.007334 0.034466
GO:0016788 hydrolase activity, acting on ester bonds 5.37% (11/205) 1.22 0.008282 0.037781
GO:0032555 purine ribonucleotide binding 13.17% (27/205) 0.7 0.008408 0.038078
GO:1902750 negative regulation of cell cycle G2/M phase transition 0.49% (1/205) 6.59 0.010353 0.038289
GO:0043564 Ku70:Ku80 complex 0.49% (1/205) 6.59 0.010353 0.038289
GO:0008296 3'-5'-DNA exonuclease activity 0.49% (1/205) 6.59 0.010353 0.038289
GO:0010389 regulation of G2/M transition of mitotic cell cycle 0.49% (1/205) 6.59 0.010353 0.038289
GO:0004799 thymidylate synthase activity 0.49% (1/205) 6.59 0.010353 0.038289
GO:0035299 inositol pentakisphosphate 2-kinase activity 0.49% (1/205) 6.59 0.010353 0.038289
GO:0006231 dTMP biosynthetic process 0.49% (1/205) 6.59 0.010353 0.038289
GO:0042083 5,10-methylenetetrahydrofolate-dependent methyltransferase activity 0.49% (1/205) 6.59 0.010353 0.038289
GO:0030896 checkpoint clamp complex 0.49% (1/205) 6.59 0.010353 0.038289
GO:0098847 sequence-specific single stranded DNA binding 0.49% (1/205) 6.59 0.010353 0.038289
GO:0043047 single-stranded telomeric DNA binding 0.49% (1/205) 6.59 0.010353 0.038289
GO:0000781 chromosome, telomeric region 0.49% (1/205) 6.59 0.010353 0.038289
GO:0045144 meiotic sister chromatid segregation 0.49% (1/205) 6.59 0.010353 0.038289
GO:0043968 histone H2A acetylation 0.49% (1/205) 6.59 0.010353 0.038289
GO:0034086 maintenance of sister chromatid cohesion 0.49% (1/205) 6.59 0.010353 0.038289
GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity 0.49% (1/205) 6.59 0.010353 0.038289
GO:0051731 polynucleotide 5'-hydroxyl-kinase activity 0.49% (1/205) 6.59 0.010353 0.038289
GO:0044774 mitotic DNA integrity checkpoint signaling 0.49% (1/205) 6.59 0.010353 0.038289
GO:0044818 mitotic G2/M transition checkpoint 0.49% (1/205) 6.59 0.010353 0.038289
GO:0070985 transcription factor TFIIK complex 0.49% (1/205) 6.59 0.010353 0.038289
GO:1902749 regulation of cell cycle G2/M phase transition 0.49% (1/205) 6.59 0.010353 0.038289
GO:0046073 dTMP metabolic process 0.49% (1/205) 6.59 0.010353 0.038289
GO:0010972 negative regulation of G2/M transition of mitotic cell cycle 0.49% (1/205) 6.59 0.010353 0.038289
GO:0043967 histone H4 acetylation 0.49% (1/205) 6.59 0.010353 0.038289
GO:0034090 maintenance of meiotic sister chromatid cohesion 0.49% (1/205) 6.59 0.010353 0.038289
GO:0061695 transferase complex, transferring phosphorus-containing groups 1.46% (3/205) 2.73 0.010609 0.038328
GO:0097367 carbohydrate derivative binding 13.17% (27/205) 0.68 0.010474 0.038509
GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 0.98% (2/205) 3.68 0.010598 0.038511
GO:0018024 obsolete histone lysine N-methyltransferase activity 0.98% (2/205) 3.68 0.010598 0.038511
GO:0030554 adenyl nucleotide binding 12.68% (26/205) 0.71 0.008706 0.039144
GO:0016741 transferase activity, transferring one-carbon groups 2.93% (6/205) 1.7 0.010906 0.039175
GO:0006260 DNA replication 1.95% (4/205) 2.21 0.011425 0.040802
GO:0110165 cellular anatomical entity 13.66% (28/205) 0.65 0.011603 0.041205
GO:0016891 RNA endonuclease activity, producing 5'-phosphomonoesters 0.98% (2/205) 3.78 0.009272 0.041393
GO:0032553 ribonucleotide binding 13.17% (27/205) 0.69 0.009485 0.042044
GO:0006396 RNA processing 3.41% (7/205) 1.51 0.012058 0.04234
GO:0017056 structural constituent of nuclear pore 0.98% (2/205) 3.59 0.012003 0.042382
GO:0000166 nucleotide binding 14.15% (29/205) 0.65 0.009956 0.043515
GO:1901265 nucleoside phosphate binding 14.15% (29/205) 0.65 0.009956 0.043515
GO:0006397 mRNA processing 1.95% (4/205) 2.16 0.012616 0.044051
GO:0006950 response to stress 6.34% (13/205) 1.06 0.010168 0.044131
GO:0031123 RNA 3'-end processing 0.98% (2/205) 3.5 0.013484 0.046819
GO:0000398 mRNA splicing, via spliceosome 1.46% (3/205) 2.59 0.013825 0.047739
GO:0009157 deoxyribonucleoside monophosphate biosynthetic process 0.49% (1/205) 6.01 0.01549 0.048166
GO:0070192 chromosome organization involved in meiotic cell cycle 0.49% (1/205) 6.01 0.01549 0.048166
GO:0010496 intercellular transport 0.49% (1/205) 6.01 0.01549 0.048166
GO:0009162 deoxyribonucleoside monophosphate metabolic process 0.49% (1/205) 6.01 0.01549 0.048166
GO:0009177 pyrimidine deoxyribonucleoside monophosphate biosynthetic process 0.49% (1/205) 6.01 0.01549 0.048166
GO:0009176 pyrimidine deoxyribonucleoside monophosphate metabolic process 0.49% (1/205) 6.01 0.01549 0.048166
GO:0034518 RNA cap binding complex 0.49% (1/205) 6.01 0.01549 0.048166
GO:0005876 spindle microtubule 0.49% (1/205) 6.01 0.01549 0.048166
GO:0000339 RNA cap binding 0.49% (1/205) 6.01 0.01549 0.048166
GO:0043240 Fanconi anaemia nuclear complex 0.49% (1/205) 6.01 0.01549 0.048166
GO:0006303 double-strand break repair via nonhomologous end joining 0.49% (1/205) 6.01 0.01549 0.048166
GO:0010497 plasmodesmata-mediated intercellular transport 0.49% (1/205) 6.01 0.01549 0.048166
GO:0017196 N-terminal peptidyl-methionine acetylation 0.49% (1/205) 6.01 0.01549 0.048166
GO:0005846 nuclear cap binding complex 0.49% (1/205) 6.01 0.01549 0.048166
GO:0018206 peptidyl-methionine modification 0.49% (1/205) 6.01 0.01549 0.048166
GO:0031417 NatC complex 0.49% (1/205) 6.01 0.01549 0.048166
GO:0019888 protein phosphatase regulator activity 0.98% (2/205) 3.46 0.014253 0.048945
GO:0008152 metabolic process 28.29% (58/205) 0.38 0.016011 0.049539
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (205) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms