Coexpression cluster: Cluster_137 (Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016070 RNA metabolic process 21.93% (25/114) 3.09 0.0 0.0
GO:0090304 nucleic acid metabolic process 27.19% (31/114) 2.64 0.0 0.0
GO:0006396 RNA processing 15.79% (18/114) 3.72 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 28.07% (32/114) 2.37 0.0 0.0
GO:0005488 binding 66.67% (76/114) 1.07 0.0 0.0
GO:0046483 heterocycle metabolic process 28.07% (32/114) 2.25 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 28.07% (32/114) 2.24 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 28.07% (32/114) 2.21 0.0 0.0
GO:0005515 protein binding 35.09% (40/114) 1.64 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 28.07% (32/114) 1.95 0.0 0.0
GO:0043227 membrane-bounded organelle 14.91% (17/114) 2.89 0.0 0.0
GO:0043231 intracellular membrane-bounded organelle 14.91% (17/114) 2.89 0.0 0.0
GO:0005634 nucleus 13.16% (15/114) 3.1 0.0 0.0
GO:0003676 nucleic acid binding 29.82% (34/114) 1.72 0.0 0.0
GO:0003674 molecular_function 79.82% (91/114) 0.61 0.0 0.0
GO:0003723 RNA binding 15.79% (18/114) 2.61 0.0 0.0
GO:0043226 organelle 17.54% (20/114) 2.25 0.0 0.0
GO:0043229 intracellular organelle 17.54% (20/114) 2.25 0.0 0.0
GO:0043170 macromolecule metabolic process 33.33% (38/114) 1.24 0.0 4e-06
GO:0022613 ribonucleoprotein complex biogenesis 4.39% (5/114) 5.23 0.0 5e-06
GO:0097159 organic cyclic compound binding 38.6% (44/114) 1.02 1e-06 2e-05
GO:0009451 RNA modification 6.14% (7/114) 3.76 1e-06 2e-05
GO:0034470 ncRNA processing 6.14% (7/114) 3.74 1e-06 2.1e-05
GO:0005575 cellular_component 28.95% (33/114) 1.25 1e-06 2.4e-05
GO:0017056 structural constituent of nuclear pore 3.51% (4/114) 5.44 2e-06 4e-05
GO:0042254 ribosome biogenesis 3.51% (4/114) 5.44 2e-06 4e-05
GO:0006913 nucleocytoplasmic transport 4.39% (5/114) 4.57 2e-06 4.1e-05
GO:0051169 nuclear transport 4.39% (5/114) 4.53 3e-06 4.5e-05
GO:0006807 nitrogen compound metabolic process 33.33% (38/114) 1.06 4e-06 6.2e-05
GO:0005643 nuclear pore 3.51% (4/114) 5.23 4e-06 6.3e-05
GO:0009987 cellular process 42.98% (49/114) 0.86 4e-06 6.4e-05
GO:0044085 cellular component biogenesis 4.39% (5/114) 3.99 1.7e-05 0.000239
GO:0034660 ncRNA metabolic process 6.14% (7/114) 3.13 1.7e-05 0.000246
GO:0016071 mRNA metabolic process 5.26% (6/114) 3.31 3.5e-05 0.000452
GO:0016779 nucleotidyltransferase activity 5.26% (6/114) 3.31 3.5e-05 0.000452
GO:0140098 catalytic activity, acting on RNA 7.02% (8/114) 2.71 3.3e-05 0.000456
GO:0044238 primary metabolic process 35.09% (40/114) 0.88 3.8e-05 0.000483
GO:0044237 cellular metabolic process 29.82% (34/114) 0.98 5.2e-05 0.000644
GO:0008033 tRNA processing 3.51% (4/114) 4.23 6.5e-05 0.000778
GO:0140640 catalytic activity, acting on a nucleic acid 9.65% (11/114) 2.02 8.8e-05 0.001032
GO:0140513 nuclear protein-containing complex 6.14% (7/114) 2.72 0.000101 0.001124
GO:0003887 DNA-directed DNA polymerase activity 2.63% (3/114) 5.07 9.9e-05 0.001133
GO:0034061 DNA polymerase activity 2.63% (3/114) 5.02 0.000109 0.001189
GO:0043414 macromolecule methylation 3.51% (4/114) 3.96 0.000133 0.001353
GO:0001510 RNA methylation 2.63% (3/114) 4.93 0.000131 0.001365
GO:0006260 DNA replication 4.39% (5/114) 3.37 0.000129 0.00137
GO:0006397 mRNA processing 4.39% (5/114) 3.33 0.000148 0.001472
GO:0016887 ATP hydrolysis activity 6.14% (7/114) 2.62 0.000154 0.001497
GO:0071704 organic substance metabolic process 35.09% (40/114) 0.78 0.000187 0.001784
GO:0000974 Prp19 complex 1.75% (2/114) 6.44 0.000229 0.00214
GO:0110165 cellular anatomical entity 19.3% (22/114) 1.15 0.000307 0.002814
GO:0032991 protein-containing complex 12.28% (14/114) 1.52 0.000369 0.00326
GO:0032259 methylation 3.51% (4/114) 3.58 0.000367 0.003307
GO:0006400 tRNA modification 2.63% (3/114) 4.38 0.000416 0.003603
GO:0017111 ribonucleoside triphosphate phosphatase activity 7.02% (8/114) 2.06 0.000713 0.00607
GO:0008152 metabolic process 35.09% (40/114) 0.69 0.000736 0.006148
GO:0008150 biological_process 51.75% (59/114) 0.48 0.000972 0.007983
GO:0071840 cellular component organization or biogenesis 9.65% (11/114) 1.59 0.001143 0.009222
GO:0016462 pyrophosphatase activity 7.02% (8/114) 1.95 0.001166 0.009246
GO:0000152 nuclear ubiquitin ligase complex 1.75% (2/114) 5.27 0.001226 0.009404
GO:0005680 anaphase-promoting complex 1.75% (2/114) 5.27 0.001226 0.009404
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 7.02% (8/114) 1.92 0.001306 0.009856
GO:0006259 DNA metabolic process 7.02% (8/114) 1.92 0.001328 0.009868
GO:0016817 hydrolase activity, acting on acid anhydrides 7.02% (8/114) 1.91 0.001387 0.009983
GO:0006399 tRNA metabolic process 3.51% (4/114) 3.07 0.001371 0.010026
GO:0006606 protein import into nucleus 1.75% (2/114) 5.04 0.001673 0.011686
GO:0034504 protein localization to nucleus 1.75% (2/114) 5.04 0.001673 0.011686
GO:0031267 small GTPase binding 1.75% (2/114) 4.98 0.001837 0.012107
GO:0051170 import into nucleus 1.75% (2/114) 4.98 0.001837 0.012107
GO:0051020 GTPase binding 1.75% (2/114) 4.98 0.001837 0.012107
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 2.63% (3/114) 3.65 0.001819 0.012517
GO:0019899 enzyme binding 2.63% (3/114) 3.6 0.002013 0.012906
GO:0005730 nucleolus 1.75% (2/114) 4.91 0.002008 0.013051
GO:0009057 macromolecule catabolic process 4.39% (5/114) 2.46 0.002259 0.014288
GO:0005739 mitochondrion 1.75% (2/114) 4.79 0.002372 0.014801
GO:1902975 mitotic DNA replication initiation 0.88% (1/114) 8.44 0.002886 0.016884
GO:0008479 tRNA-guanosine(34) queuine transglycosylase activity 0.88% (1/114) 8.44 0.002886 0.016884
GO:1902315 nuclear cell cycle DNA replication initiation 0.88% (1/114) 8.44 0.002886 0.016884
GO:1902292 cell cycle DNA replication initiation 0.88% (1/114) 8.44 0.002886 0.016884
GO:0000493 box H/ACA snoRNP assembly 0.88% (1/114) 8.44 0.002886 0.016884
GO:0006364 rRNA processing 2.63% (3/114) 3.34 0.003358 0.0194
GO:0007005 mitochondrion organization 1.75% (2/114) 4.48 0.003635 0.020748
GO:0016072 rRNA metabolic process 2.63% (3/114) 3.25 0.003936 0.022195
GO:0072423 response to DNA damage checkpoint signaling 0.88% (1/114) 7.44 0.005764 0.026976
GO:0072402 response to DNA integrity checkpoint signaling 0.88% (1/114) 7.44 0.005764 0.026976
GO:0016428 tRNA (cytidine-5-)-methyltransferase activity 0.88% (1/114) 7.44 0.005764 0.026976
GO:0009019 obsolete tRNA (guanine-N1-)-methyltransferase activity 0.88% (1/114) 7.44 0.005764 0.026976
GO:0061731 ribonucleoside-diphosphate reductase activity 0.88% (1/114) 7.44 0.005764 0.026976
GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor 0.88% (1/114) 7.44 0.005764 0.026976
GO:0072396 response to cell cycle checkpoint signaling 0.88% (1/114) 7.44 0.005764 0.026976
GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor 0.88% (1/114) 7.44 0.005764 0.026976
GO:0009933 meristem structural organization 0.88% (1/114) 7.44 0.005764 0.026976
GO:0048532 anatomical structure arrangement 0.88% (1/114) 7.44 0.005764 0.026976
GO:0071216 cellular response to biotic stimulus 0.88% (1/114) 7.44 0.005764 0.026976
GO:0071495 cellular response to endogenous stimulus 0.88% (1/114) 7.44 0.005764 0.026976
GO:0035266 meristem growth 0.88% (1/114) 7.44 0.005764 0.026976
GO:0016427 tRNA (cytidine) methyltransferase activity 0.88% (1/114) 7.44 0.005764 0.026976
GO:0008380 RNA splicing 2.63% (3/114) 3.03 0.006021 0.027095
GO:0031461 cullin-RING ubiquitin ligase complex 1.75% (2/114) 4.27 0.004879 0.027184
GO:0046907 intracellular transport 4.39% (5/114) 2.13 0.005884 0.027263
GO:0051649 establishment of localization in cell 4.39% (5/114) 2.13 0.006008 0.027297
GO:0071826 protein-RNA complex organization 1.75% (2/114) 4.11 0.005996 0.027509
GO:1990234 transferase complex 3.51% (4/114) 2.55 0.005038 0.027741
GO:0008173 RNA methyltransferase activity 1.75% (2/114) 4.08 0.006291 0.028041
GO:0000151 ubiquitin ligase complex 1.75% (2/114) 4.04 0.006593 0.029111
GO:0022618 protein-RNA complex assembly 1.75% (2/114) 4.19 0.005424 0.029517
GO:0070647 protein modification by small protein conjugation or removal 3.51% (4/114) 2.35 0.008124 0.035533
GO:0000339 RNA cap binding 0.88% (1/114) 6.85 0.008634 0.036077
GO:0005846 nuclear cap binding complex 0.88% (1/114) 6.85 0.008634 0.036077
GO:0034518 RNA cap binding complex 0.88% (1/114) 6.85 0.008634 0.036077
GO:0000491 small nucleolar ribonucleoprotein complex assembly 0.88% (1/114) 6.85 0.008634 0.036077
GO:0019237 centromeric DNA binding 0.88% (1/114) 6.85 0.008634 0.036077
GO:1901874 negative regulation of post-translational protein modification 0.88% (1/114) 6.44 0.011495 0.044097
GO:1904667 negative regulation of ubiquitin protein ligase activity 0.88% (1/114) 6.44 0.011495 0.044097
GO:0051382 kinetochore assembly 0.88% (1/114) 6.44 0.011495 0.044097
GO:0051383 kinetochore organization 0.88% (1/114) 6.44 0.011495 0.044097
GO:1903321 negative regulation of protein modification by small protein conjugation or removal 0.88% (1/114) 6.44 0.011495 0.044097
GO:0016725 oxidoreductase activity, acting on CH or CH2 groups 0.88% (1/114) 6.44 0.011495 0.044097
GO:0031397 negative regulation of protein ubiquitination 0.88% (1/114) 6.44 0.011495 0.044097
GO:0051444 negative regulation of ubiquitin-protein transferase activity 0.88% (1/114) 6.44 0.011495 0.044097
GO:0006401 RNA catabolic process 1.75% (2/114) 3.66 0.011099 0.045965
GO:0140535 intracellular protein-containing complex 3.51% (4/114) 2.21 0.011207 0.046007
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (114) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms