Coexpression cluster: Cluster_140 (Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1990837 sequence-specific double-stranded DNA binding 4.35% (6/138) 4.19 1e-06 0.000134
GO:0000976 transcription cis-regulatory region binding 4.35% (6/138) 4.27 1e-06 0.000146
GO:0001067 transcription regulatory region nucleic acid binding 4.35% (6/138) 4.27 1e-06 0.000146
GO:0051252 regulation of RNA metabolic process 13.04% (18/138) 1.57 3.6e-05 0.001004
GO:2001141 regulation of RNA biosynthetic process 13.04% (18/138) 1.58 3.4e-05 0.001019
GO:0006355 regulation of DNA-templated transcription 13.04% (18/138) 1.58 3.4e-05 0.001019
GO:0019219 regulation of nucleobase-containing compound metabolic process 13.04% (18/138) 1.56 4.1e-05 0.001064
GO:0031326 regulation of cellular biosynthetic process 13.77% (19/138) 1.53 3.3e-05 0.001171
GO:0009889 regulation of biosynthetic process 13.77% (19/138) 1.53 3.3e-05 0.001171
GO:0060255 regulation of macromolecule metabolic process 13.77% (19/138) 1.46 6.1e-05 0.001394
GO:0031323 regulation of cellular metabolic process 13.77% (19/138) 1.47 5.8e-05 0.001404
GO:0010556 regulation of macromolecule biosynthetic process 13.77% (19/138) 1.53 3.3e-05 0.00141
GO:0003677 DNA binding 14.49% (20/138) 1.54 1.8e-05 0.001432
GO:0003690 double-stranded DNA binding 4.35% (6/138) 3.53 1.5e-05 0.001449
GO:0019222 regulation of metabolic process 13.77% (19/138) 1.44 7e-05 0.001525
GO:0010468 regulation of gene expression 13.77% (19/138) 1.53 3.2e-05 0.001542
GO:0080090 regulation of primary metabolic process 13.77% (19/138) 1.54 2.8e-05 0.001558
GO:0051171 regulation of nitrogen compound metabolic process 13.77% (19/138) 1.55 2.7e-05 0.001739
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 2.9% (4/138) 4.01 0.000116 0.002373
GO:0045944 positive regulation of transcription by RNA polymerase II 2.9% (4/138) 3.99 0.000122 0.00238
GO:0043565 sequence-specific DNA binding 5.8% (8/138) 2.36 0.000186 0.003458
GO:0005634 nucleus 6.52% (9/138) 2.09 0.000292 0.005168
GO:0048518 positive regulation of biological process 3.62% (5/138) 2.93 0.000538 0.006772
GO:0031328 positive regulation of cellular biosynthetic process 2.9% (4/138) 3.43 0.000538 0.006991
GO:0009891 positive regulation of biosynthetic process 2.9% (4/138) 3.43 0.000538 0.006991
GO:0010557 positive regulation of macromolecule biosynthetic process 2.9% (4/138) 3.43 0.000538 0.006991
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 2.9% (4/138) 3.47 0.000482 0.007237
GO:1902680 positive regulation of RNA biosynthetic process 2.9% (4/138) 3.49 0.000465 0.007254
GO:0045893 positive regulation of DNA-templated transcription 2.9% (4/138) 3.49 0.000465 0.007254
GO:0051254 positive regulation of RNA metabolic process 2.9% (4/138) 3.49 0.000465 0.007254
GO:0009627 systemic acquired resistance 1.45% (2/138) 5.7 0.000653 0.007716
GO:0003968 RNA-dependent RNA polymerase activity 1.45% (2/138) 5.7 0.000653 0.007716
GO:0005504 fatty acid binding 1.45% (2/138) 5.84 0.000535 0.007734
GO:0031325 positive regulation of cellular metabolic process 2.9% (4/138) 3.25 0.000856 0.009823
GO:0001708 cell fate specification 1.45% (2/138) 5.46 0.000922 0.009985
GO:0010158 abaxial cell fate specification 1.45% (2/138) 5.46 0.000922 0.009985
GO:0033293 monocarboxylic acid binding 1.45% (2/138) 5.25 0.001235 0.011748
GO:0048522 positive regulation of cellular process 2.9% (4/138) 3.15 0.00112 0.011808
GO:0051173 positive regulation of nitrogen compound metabolic process 2.9% (4/138) 3.12 0.00122 0.011891
GO:0010604 positive regulation of macromolecule metabolic process 2.9% (4/138) 3.12 0.00122 0.011891
GO:0050789 regulation of biological process 14.49% (20/138) 1.08 0.001159 0.011894
GO:0009893 positive regulation of metabolic process 2.9% (4/138) 3.08 0.001325 0.012304
GO:0050794 regulation of cellular process 13.77% (19/138) 1.09 0.001425 0.012922
GO:0065007 biological regulation 14.49% (20/138) 1.05 0.001588 0.014072
GO:0043227 membrane-bounded organelle 6.52% (9/138) 1.7 0.001951 0.016543
GO:0043231 intracellular membrane-bounded organelle 6.52% (9/138) 1.7 0.001951 0.016543
GO:0006357 regulation of transcription by RNA polymerase II 2.9% (4/138) 2.82 0.002575 0.021368
GO:0005249 voltage-gated potassium channel activity 1.45% (2/138) 4.64 0.002922 0.023741
GO:0003676 nucleic acid binding 16.67% (23/138) 0.88 0.003123 0.024855
GO:1990879 CST complex 0.72% (1/138) 8.16 0.003494 0.026204
GO:0000783 nuclear telomere cap complex 0.72% (1/138) 8.16 0.003494 0.026204
GO:0000782 telomere cap complex 0.72% (1/138) 8.16 0.003494 0.026204
GO:0022843 voltage-gated monoatomic cation channel activity 1.45% (2/138) 4.46 0.003728 0.027432
GO:0005267 potassium channel activity 1.45% (2/138) 4.35 0.004316 0.031172
GO:0048869 cellular developmental process 1.45% (2/138) 4.21 0.005273 0.037392
GO:0052689 carboxylic ester hydrolase activity 2.17% (3/138) 3.03 0.006033 0.042016
GO:0009812 flavonoid metabolic process 0.72% (1/138) 7.16 0.006976 0.045341
GO:0008531 riboflavin kinase activity 0.72% (1/138) 7.16 0.006976 0.045341
GO:0009813 flavonoid biosynthetic process 0.72% (1/138) 7.16 0.006976 0.045341
GO:0045430 chalcone isomerase activity 0.72% (1/138) 7.16 0.006976 0.045341
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (138) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms