Coexpression cluster: Cluster_44 (Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044271 cellular nitrogen compound biosynthetic process 31.34% (21/67) 3.35 0.0 0.0
GO:0009055 electron transfer activity 16.42% (11/67) 5.48 0.0 0.0
GO:0009059 macromolecule biosynthetic process 26.87% (18/67) 3.37 0.0 0.0
GO:0044249 cellular biosynthetic process 32.84% (22/67) 2.81 0.0 0.0
GO:1901576 organic substance biosynthetic process 32.84% (22/67) 2.69 0.0 0.0
GO:0009058 biosynthetic process 32.84% (22/67) 2.61 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 23.88% (16/67) 3.12 0.0 0.0
GO:0022900 electron transport chain 10.45% (7/67) 5.55 0.0 0.0
GO:0006412 translation 17.91% (12/67) 3.65 0.0 0.0
GO:0043043 peptide biosynthetic process 17.91% (12/67) 3.61 0.0 0.0
GO:0003735 structural constituent of ribosome 17.91% (12/67) 3.61 0.0 0.0
GO:0044237 cellular metabolic process 47.76% (32/67) 1.66 0.0 0.0
GO:0009767 photosynthetic electron transport chain 7.46% (5/67) 7.0 0.0 0.0
GO:0006518 peptide metabolic process 17.91% (12/67) 3.53 0.0 0.0
GO:0043604 amide biosynthetic process 17.91% (12/67) 3.51 0.0 0.0
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity 5.97% (4/67) 8.03 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 32.84% (22/67) 2.18 0.0 0.0
GO:0043603 amide metabolic process 17.91% (12/67) 3.39 0.0 0.0
GO:0015453 oxidoreduction-driven active transmembrane transporter activity 7.46% (5/67) 6.62 0.0 0.0
GO:0005198 structural molecule activity 17.91% (12/67) 3.36 0.0 0.0
GO:0008152 metabolic process 55.22% (37/67) 1.35 0.0 0.0
GO:0043228 non-membrane-bounded organelle 16.42% (11/67) 3.27 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 16.42% (11/67) 3.27 0.0 0.0
GO:0005840 ribosome 14.93% (10/67) 3.46 0.0 0.0
GO:0044391 ribosomal subunit 8.96% (6/67) 4.93 0.0 1e-06
GO:0016984 ribulose-bisphosphate carboxylase activity 4.48% (3/67) 8.2 0.0 1e-06
GO:0034654 nucleobase-containing compound biosynthetic process 13.43% (9/67) 3.45 0.0 1e-06
GO:0015078 proton transmembrane transporter activity 8.96% (6/67) 4.66 0.0 2e-06
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 7.46% (5/67) 5.34 0.0 2e-06
GO:0006091 generation of precursor metabolites and energy 10.45% (7/67) 4.05 0.0 2e-06
GO:0097747 RNA polymerase activity 7.46% (5/67) 5.13 0.0 3e-06
GO:0034062 5'-3' RNA polymerase activity 7.46% (5/67) 5.13 0.0 3e-06
GO:0005575 cellular_component 35.82% (24/67) 1.56 1e-06 5e-06
GO:0006754 ATP biosynthetic process 5.97% (4/67) 5.88 1e-06 6e-06
GO:0015986 proton motive force-driven ATP synthesis 5.97% (4/67) 5.88 1e-06 6e-06
GO:0019438 aromatic compound biosynthetic process 13.43% (9/67) 3.11 1e-06 8e-06
GO:0018130 heterocycle biosynthetic process 13.43% (9/67) 3.1 1e-06 8e-06
GO:0006351 DNA-templated transcription 8.96% (6/67) 4.16 1e-06 9e-06
GO:0009987 cellular process 50.75% (34/67) 1.1 1e-06 1e-05
GO:0009145 purine nucleoside triphosphate biosynthetic process 5.97% (4/67) 5.62 1e-06 1e-05
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 5.97% (4/67) 5.62 1e-06 1e-05
GO:1901362 organic cyclic compound biosynthetic process 13.43% (9/67) 2.97 2e-06 1.5e-05
GO:0009201 ribonucleoside triphosphate biosynthetic process 5.97% (4/67) 5.42 2e-06 1.6e-05
GO:0009142 nucleoside triphosphate biosynthetic process 5.97% (4/67) 5.42 2e-06 1.6e-05
GO:0110165 cellular anatomical entity 28.36% (19/67) 1.7 3e-06 1.8e-05
GO:0098796 membrane protein complex 10.45% (7/67) 3.44 4e-06 2.3e-05
GO:1990904 ribonucleoprotein complex 8.96% (6/67) 3.85 4e-06 2.3e-05
GO:0034357 photosynthetic membrane 4.48% (3/67) 6.62 4e-06 2.3e-05
GO:0042651 thylakoid membrane 4.48% (3/67) 6.62 4e-06 2.3e-05
GO:0032991 protein-containing complex 19.4% (13/67) 2.18 4e-06 2.5e-05
GO:0046034 ATP metabolic process 7.46% (5/67) 4.39 4e-06 2.5e-05
GO:0043226 organelle 17.91% (12/67) 2.28 6e-06 3e-05
GO:0043229 intracellular organelle 17.91% (12/67) 2.28 6e-06 3e-05
GO:0009205 purine ribonucleoside triphosphate metabolic process 7.46% (5/67) 4.31 6e-06 3.1e-05
GO:0009144 purine nucleoside triphosphate metabolic process 7.46% (5/67) 4.31 6e-06 3.1e-05
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) 4.48% (3/67) 6.33 7e-06 3.5e-05
GO:0050136 NADH dehydrogenase (quinone) activity 4.48% (3/67) 6.33 7e-06 3.5e-05
GO:0008137 NADH dehydrogenase (ubiquinone) activity 4.48% (3/67) 6.33 7e-06 3.5e-05
GO:0009199 ribonucleoside triphosphate metabolic process 7.46% (5/67) 4.24 7e-06 3.5e-05
GO:0009141 nucleoside triphosphate metabolic process 7.46% (5/67) 4.13 1e-05 5e-05
GO:0032774 RNA biosynthetic process 8.96% (6/67) 3.57 1.2e-05 5.7e-05
GO:0003955 NAD(P)H dehydrogenase (quinone) activity 4.48% (3/67) 5.98 1.5e-05 7e-05
GO:0022890 inorganic cation transmembrane transporter activity 8.96% (6/67) 3.48 1.7e-05 7.8e-05
GO:0008150 biological_process 62.69% (42/67) 0.76 1.9e-05 8.2e-05
GO:0009152 purine ribonucleotide biosynthetic process 5.97% (4/67) 4.68 1.9e-05 8.2e-05
GO:0071704 organic substance metabolic process 43.28% (29/67) 1.09 1.8e-05 8.2e-05
GO:0006807 nitrogen compound metabolic process 37.31% (25/67) 1.22 1.9e-05 8.4e-05
GO:0003954 NADH dehydrogenase activity 4.48% (3/67) 5.88 1.8e-05 8.4e-05
GO:0015252 proton channel activity 4.48% (3/67) 5.83 2e-05 8.5e-05
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism 4.48% (3/67) 5.83 2e-05 8.5e-05
GO:0009260 ribonucleotide biosynthetic process 5.97% (4/67) 4.53 2.8e-05 0.000106
GO:0046390 ribose phosphate biosynthetic process 5.97% (4/67) 4.53 2.8e-05 0.000106
GO:0016675 oxidoreductase activity, acting on a heme group of donors 2.99% (2/67) 7.88 2.8e-05 0.000109
GO:0016168 chlorophyll binding 2.99% (2/67) 7.88 2.8e-05 0.000109
GO:0004129 cytochrome-c oxidase activity 2.99% (2/67) 7.88 2.8e-05 0.000109
GO:0051539 4 iron, 4 sulfur cluster binding 4.48% (3/67) 5.7 2.7e-05 0.000109
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor 4.48% (3/67) 5.7 2.7e-05 0.000109
GO:0016779 nucleotidyltransferase activity 7.46% (5/67) 3.81 3e-05 0.000111
GO:0016491 oxidoreductase activity 17.91% (12/67) 2.05 2.8e-05 0.000112
GO:0022904 respiratory electron transport chain 4.48% (3/67) 5.62 3.2e-05 0.000117
GO:0008324 monoatomic cation transmembrane transporter activity 8.96% (6/67) 3.3 3.4e-05 0.000124
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain 4.48% (3/67) 5.54 3.8e-05 0.000134
GO:0009150 purine ribonucleotide metabolic process 7.46% (5/67) 3.71 4.2e-05 0.000148
GO:0009772 photosynthetic electron transport in photosystem II 2.99% (2/67) 7.62 4.2e-05 0.000149
GO:0044238 primary metabolic process 40.3% (27/67) 1.08 4.5e-05 0.000154
GO:0006164 purine nucleotide biosynthetic process 5.97% (4/67) 4.36 4.5e-05 0.000154
GO:0015935 small ribosomal subunit 4.48% (3/67) 5.4 5.1e-05 0.000171
GO:0009259 ribonucleotide metabolic process 7.46% (5/67) 3.64 5.2e-05 0.000173
GO:0003723 RNA binding 13.43% (9/67) 2.38 5.5e-05 0.00018
GO:0019693 ribose phosphate metabolic process 7.46% (5/67) 3.62 5.5e-05 0.000182
GO:0015318 inorganic molecular entity transmembrane transporter activity 8.96% (6/67) 3.13 6.4e-05 0.000204
GO:1901564 organonitrogen compound metabolic process 29.85% (20/67) 1.33 6.4e-05 0.000205
GO:0015399 primary active transmembrane transporter activity 7.46% (5/67) 3.57 6.7e-05 0.000211
GO:0072522 purine-containing compound biosynthetic process 5.97% (4/67) 4.2 6.9e-05 0.000214
GO:0019684 photosynthesis, light reaction 2.99% (2/67) 7.2 7.9e-05 0.000242
GO:0015075 monoatomic ion transmembrane transporter activity 8.96% (6/67) 3.02 9.8e-05 0.000297
GO:0006163 purine nucleotide metabolic process 7.46% (5/67) 3.44 0.000102 0.000306
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) 2.99% (2/67) 6.88 0.000126 0.000377
GO:0072521 purine-containing compound metabolic process 7.46% (5/67) 3.37 0.000129 0.000379
GO:1901293 nucleoside phosphate biosynthetic process 5.97% (4/67) 3.93 0.000144 0.000417
GO:0009165 nucleotide biosynthetic process 5.97% (4/67) 3.93 0.000144 0.000417
GO:0009521 photosystem 4.48% (3/67) 4.86 0.000156 0.000448
GO:0009117 nucleotide metabolic process 7.46% (5/67) 3.24 0.000196 0.000554
GO:0015979 photosynthesis 4.48% (3/67) 4.7 0.000216 0.000607
GO:0015977 carbon fixation 2.99% (2/67) 6.5 0.000218 0.000607
GO:0006753 nucleoside phosphate metabolic process 7.46% (5/67) 3.19 0.000229 0.000632
GO:0043170 macromolecule metabolic process 31.34% (21/67) 1.15 0.000249 0.00068
GO:0016651 oxidoreductase activity, acting on NAD(P)H 4.48% (3/67) 4.62 0.000256 0.000685
GO:0003676 nucleic acid binding 23.88% (16/67) 1.4 0.000255 0.000689
GO:1901137 carbohydrate derivative biosynthetic process 5.97% (4/67) 3.7 0.000261 0.000693
GO:0015934 large ribosomal subunit 4.48% (3/67) 4.58 0.000277 0.00073
GO:0005261 monoatomic cation channel activity 4.48% (3/67) 4.5 0.000324 0.000845
GO:0048038 quinone binding 2.99% (2/67) 6.2 0.000335 0.000866
GO:1902600 proton transmembrane transport 4.48% (3/67) 4.4 0.000403 0.001032
GO:0055086 nucleobase-containing small molecule metabolic process 7.46% (5/67) 2.97 0.000448 0.001137
GO:0022804 active transmembrane transporter activity 7.46% (5/67) 2.94 0.000493 0.00124
GO:1901135 carbohydrate derivative metabolic process 7.46% (5/67) 2.94 0.000504 0.001259
GO:0016831 carboxy-lyase activity 4.48% (3/67) 4.26 0.000526 0.001301
GO:0140098 catalytic activity, acting on RNA 7.46% (5/67) 2.8 0.00077 0.00189
GO:0003674 molecular_function 71.64% (48/67) 0.46 0.000914 0.002225
GO:0016830 carbon-carbon lyase activity 4.48% (3/67) 3.88 0.001137 0.002744
GO:0022857 transmembrane transporter activity 11.94% (8/67) 1.93 0.001149 0.002749
GO:0051540 metal cluster binding 4.48% (3/67) 3.83 0.001249 0.002919
GO:0051536 iron-sulfur cluster binding 4.48% (3/67) 3.83 0.001249 0.002919
GO:0019538 protein metabolic process 22.39% (15/67) 1.25 0.001236 0.002935
GO:0005215 transporter activity 11.94% (8/67) 1.88 0.001413 0.003273
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain 2.99% (2/67) 5.16 0.001447 0.003326
GO:0090407 organophosphate biosynthetic process 5.97% (4/67) 3.0 0.001595 0.003638
GO:0000287 magnesium ion binding 4.48% (3/67) 3.67 0.001733 0.003923
GO:0005216 monoatomic ion channel activity 4.48% (3/67) 3.53 0.002277 0.005114
GO:0009523 photosystem II 2.99% (2/67) 4.81 0.002336 0.005207
GO:0006139 nucleobase-containing compound metabolic process 14.93% (10/67) 1.46 0.003136 0.006833
GO:0019637 organophosphate metabolic process 7.46% (5/67) 2.34 0.003134 0.006881
GO:0098655 monoatomic cation transmembrane transport 4.48% (3/67) 3.37 0.003117 0.006895
GO:0042030 ATPase inhibitor activity 1.49% (1/67) 8.2 0.00339 0.007332
GO:0098662 inorganic cation transmembrane transport 4.48% (3/67) 3.3 0.003544 0.007554
GO:0003824 catalytic activity 43.28% (29/67) 0.66 0.003529 0.007577
GO:0034220 monoatomic ion transmembrane transport 4.48% (3/67) 3.26 0.003828 0.0081
GO:0098660 inorganic ion transmembrane transport 4.48% (3/67) 3.17 0.00463 0.009727
GO:0032780 negative regulation of ATP-dependent activity 1.49% (1/67) 7.62 0.00508 0.010447
GO:0043462 regulation of ATP-dependent activity 1.49% (1/67) 7.62 0.00508 0.010447
GO:0016630 protochlorophyllide reductase activity 1.49% (1/67) 7.62 0.00508 0.010447
GO:0022803 passive transmembrane transporter activity 4.48% (3/67) 3.07 0.0056 0.011356
GO:0015267 channel activity 4.48% (3/67) 3.07 0.0056 0.011356
GO:0046483 heterocycle metabolic process 14.93% (10/67) 1.34 0.005652 0.011382
GO:0006725 cellular aromatic compound metabolic process 14.93% (10/67) 1.33 0.006083 0.012167
GO:1901360 organic cyclic compound metabolic process 14.93% (10/67) 1.3 0.006925 0.013757
GO:0016070 RNA metabolic process 8.96% (6/67) 1.8 0.007451 0.014701
GO:0016874 ligase activity 4.48% (3/67) 2.87 0.008156 0.015983
GO:0016020 membrane 10.45% (7/67) 1.52 0.010711 0.02085
GO:0097159 organic cyclic compound binding 31.34% (21/67) 0.72 0.010788 0.020863
GO:0009773 photosynthetic electron transport in photosystem I 1.49% (1/67) 5.74 0.018504 0.034636
GO:0001882 nucleoside binding 1.49% (1/67) 5.74 0.018504 0.034636
GO:0032549 ribonucleoside binding 1.49% (1/67) 5.74 0.018504 0.034636
GO:0042773 ATP synthesis coupled electron transport 1.49% (1/67) 5.74 0.018504 0.034636
GO:0006812 monoatomic cation transport 4.48% (3/67) 2.43 0.018385 0.035319
GO:0022853 active monoatomic ion transmembrane transporter activity 2.99% (2/67) 3.17 0.020972 0.039005
GO:0140640 catalytic activity, acting on a nucleic acid 7.46% (5/67) 1.65 0.021441 0.039626
GO:0060590 ATPase regulator activity 1.49% (1/67) 5.5 0.021832 0.040094
GO:0016829 lyase activity 4.48% (3/67) 2.32 0.022261 0.040626
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (67) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms