Coexpression cluster: Cluster_157 (Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005488 binding 56.57% (112/198) 0.84 0.0 0.0
GO:0140658 ATP-dependent chromatin remodeler activity 4.55% (9/198) 5.23 0.0 0.0
GO:0140640 catalytic activity, acting on a nucleic acid 13.13% (26/198) 2.47 0.0 0.0
GO:0005515 protein binding 29.8% (59/198) 1.4 0.0 0.0
GO:0016070 RNA metabolic process 13.64% (27/198) 2.41 0.0 0.0
GO:0140657 ATP-dependent activity 11.62% (23/198) 2.38 0.0 0.0
GO:0003674 molecular_function 72.22% (143/198) 0.47 0.0 1e-06
GO:0090304 nucleic acid metabolic process 14.65% (29/198) 1.74 0.0 1e-06
GO:0097346 INO80-type complex 2.53% (5/198) 5.79 0.0 1e-06
GO:0031011 Ino80 complex 2.53% (5/198) 5.79 0.0 1e-06
GO:0043687 post-translational protein modification 6.57% (13/198) 2.9 0.0 2e-06
GO:0016579 protein deubiquitination 3.54% (7/198) 4.47 0.0 2e-06
GO:0101005 deubiquitinase activity 4.04% (8/198) 4.01 0.0 2e-06
GO:0019783 ubiquitin-like protein peptidase activity 4.04% (8/198) 4.0 0.0 2e-06
GO:0070646 protein modification by small protein removal 3.54% (7/198) 4.38 0.0 2e-06
GO:0070603 SWI/SNF superfamily-type complex 2.53% (5/198) 5.38 0.0 4e-06
GO:0004843 cysteine-type deubiquitinase activity 3.54% (7/198) 4.2 0.0 4e-06
GO:0070647 protein modification by small protein conjugation or removal 5.56% (11/198) 3.01 0.0 5e-06
GO:1904949 ATPase complex 2.53% (5/198) 5.32 0.0 5e-06
GO:0003723 RNA binding 10.1% (20/198) 1.97 0.0 8e-06
GO:0032991 protein-containing complex 13.13% (26/198) 1.62 0.0 1.2e-05
GO:0006325 chromatin organization 3.54% (7/198) 3.79 1e-06 2.3e-05
GO:0006396 RNA processing 6.57% (13/198) 2.46 1e-06 2.4e-05
GO:0006139 nucleobase-containing compound metabolic process 14.65% (29/198) 1.43 1e-06 2.8e-05
GO:0003676 nucleic acid binding 20.2% (40/198) 1.16 1e-06 2.8e-05
GO:0005049 nuclear export signal receptor activity 1.52% (3/198) 6.9 1e-06 2.9e-05
GO:1902494 catalytic complex 6.57% (13/198) 2.35 2e-06 4.6e-05
GO:0043170 macromolecule metabolic process 26.77% (53/198) 0.92 2e-06 4.9e-05
GO:0006397 mRNA processing 4.04% (8/198) 3.21 3e-06 5.8e-05
GO:1901360 organic cyclic compound metabolic process 15.15% (30/198) 1.32 4e-06 7.2e-05
GO:0071824 protein-DNA complex organization 3.54% (7/198) 3.46 4e-06 7.6e-05
GO:0019899 enzyme binding 3.03% (6/198) 3.8 5e-06 9.2e-05
GO:0009057 macromolecule catabolic process 5.05% (10/198) 2.66 5e-06 9.3e-05
GO:0046483 heterocycle metabolic process 14.65% (29/198) 1.31 6e-06 0.000102
GO:0008150 biological_process 52.53% (104/198) 0.5 7e-06 0.000116
GO:0006725 cellular aromatic compound metabolic process 14.65% (29/198) 1.3 7e-06 0.000119
GO:0006338 chromatin remodeling 3.03% (6/198) 3.7 7e-06 0.000121
GO:0043933 protein-containing complex organization 5.05% (10/198) 2.59 8e-06 0.000125
GO:0030554 adenyl nucleotide binding 17.17% (34/198) 1.15 9e-06 0.000143
GO:0016071 mRNA metabolic process 4.04% (8/198) 2.93 1.2e-05 0.000183
GO:0017076 purine nucleotide binding 18.18% (36/198) 1.09 1.2e-05 0.000184
GO:0005524 ATP binding 15.66% (31/198) 1.17 1.8e-05 0.00026
GO:0032559 adenyl ribonucleotide binding 16.16% (32/198) 1.15 1.8e-05 0.000267
GO:0140535 intracellular protein-containing complex 4.55% (9/198) 2.59 2.2e-05 0.00031
GO:0097159 organic cyclic compound binding 31.31% (62/198) 0.72 2.3e-05 0.000314
GO:0032555 purine ribonucleotide binding 17.17% (34/198) 1.09 2.4e-05 0.000317
GO:0035639 purine ribonucleoside triphosphate binding 16.67% (33/198) 1.1 2.4e-05 0.000318
GO:0140142 nucleocytoplasmic carrier activity 1.52% (3/198) 5.64 2.6e-05 0.000337
GO:0032553 ribonucleotide binding 17.17% (34/198) 1.07 2.9e-05 0.000362
GO:0140097 catalytic activity, acting on DNA 5.56% (11/198) 2.2 3.3e-05 0.000406
GO:0097367 carbohydrate derivative binding 17.17% (34/198) 1.06 3.4e-05 0.000409
GO:0000166 nucleotide binding 18.18% (36/198) 1.02 3.7e-05 0.000426
GO:1901265 nucleoside phosphate binding 18.18% (36/198) 1.02 3.7e-05 0.000426
GO:0051169 nuclear transport 2.53% (5/198) 3.73 3.9e-05 0.000443
GO:0140098 catalytic activity, acting on RNA 5.05% (10/198) 2.24 6.1e-05 0.000675
GO:0004652 obsolete polynucleotide adenylyltransferase activity 1.52% (3/198) 5.23 6.6e-05 0.000711
GO:0043631 obsolete RNA polyadenylation 1.52% (3/198) 5.23 6.6e-05 0.000711
GO:1901363 heterocyclic compound binding 18.18% (36/198) 0.95 9e-05 0.000946
GO:0043168 anion binding 17.68% (35/198) 0.96 0.0001 0.001039
GO:0034641 cellular nitrogen compound metabolic process 15.15% (30/198) 1.06 0.000104 0.001065
GO:0036094 small molecule binding 18.18% (36/198) 0.94 0.000108 0.00108
GO:0140513 nuclear protein-containing complex 4.55% (9/198) 2.29 0.00011 0.001085
GO:0070988 demethylation 1.52% (3/198) 4.98 0.000113 0.001101
GO:0032451 demethylase activity 1.52% (3/198) 4.77 0.000178 0.001677
GO:0006357 regulation of transcription by RNA polymerase II 3.03% (6/198) 2.89 0.000176 0.001682
GO:0008094 ATP-dependent activity, acting on DNA 4.55% (9/198) 2.18 0.000194 0.001795
GO:0051246 regulation of protein metabolic process 2.53% (5/198) 3.17 0.000251 0.002193
GO:0031929 TOR signaling 1.01% (2/198) 6.32 0.000248 0.002196
GO:0031931 TORC1 complex 1.01% (2/198) 6.32 0.000248 0.002196
GO:0038201 TOR complex 1.01% (2/198) 6.32 0.000248 0.002196
GO:0006807 nitrogen compound metabolic process 25.76% (51/198) 0.69 0.000281 0.002426
GO:0044238 primary metabolic process 29.29% (58/198) 0.62 0.000308 0.002614
GO:0043632 modification-dependent macromolecule catabolic process 3.03% (6/198) 2.71 0.000339 0.002764
GO:0019941 modification-dependent protein catabolic process 3.03% (6/198) 2.71 0.000339 0.002764
GO:0006511 ubiquitin-dependent protein catabolic process 3.03% (6/198) 2.71 0.000339 0.002764
GO:0140104 molecular carrier activity 1.52% (3/198) 4.37 0.000412 0.003316
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA 1.01% (2/198) 5.83 0.000516 0.004052
GO:0006351 DNA-templated transcription 3.03% (6/198) 2.6 0.000514 0.004086
GO:0051641 cellular localization 5.05% (10/198) 1.84 0.000549 0.00425
GO:1901575 organic substance catabolic process 5.56% (11/198) 1.7 0.000669 0.004993
GO:0043021 ribonucleoprotein complex binding 1.52% (3/198) 4.14 0.000662 0.005002
GO:0031123 RNA 3'-end processing 1.52% (3/198) 4.14 0.000662 0.005002
GO:0000502 proteasome complex 1.01% (2/198) 5.64 0.000686 0.005061
GO:0016779 nucleotidyltransferase activity 3.03% (6/198) 2.51 0.0007 0.005097
GO:0032774 RNA biosynthetic process 3.54% (7/198) 2.23 0.00081 0.005833
GO:0051603 proteolysis involved in protein catabolic process 3.03% (6/198) 2.46 0.000849 0.006045
GO:0034248 regulation of amide metabolic process 1.52% (3/198) 3.98 0.00092 0.006254
GO:0006417 regulation of translation 1.52% (3/198) 3.98 0.00092 0.006254
GO:0016887 ATP hydrolysis activity 4.04% (8/198) 2.02 0.000897 0.00631
GO:0051649 establishment of localization in cell 4.04% (8/198) 2.01 0.000942 0.006333
GO:0046907 intracellular transport 4.04% (8/198) 2.01 0.000912 0.006341
GO:0060255 regulation of macromolecule metabolic process 10.61% (21/198) 1.08 0.000996 0.006625
GO:0009056 catabolic process 5.56% (11/198) 1.61 0.001076 0.007079
GO:0019222 regulation of metabolic process 10.61% (21/198) 1.07 0.001143 0.007361
GO:0051171 regulation of nitrogen compound metabolic process 10.1% (20/198) 1.1 0.001136 0.007399
GO:0080090 regulation of primary metabolic process 10.1% (20/198) 1.1 0.001181 0.00753
GO:0010608 post-transcriptional regulation of gene expression 1.52% (3/198) 3.83 0.001233 0.007781
GO:0004386 helicase activity 4.04% (8/198) 1.93 0.001326 0.008283
GO:0000398 mRNA splicing, via spliceosome 2.02% (4/198) 3.06 0.00142 0.008779
GO:0043167 ion binding 21.72% (43/198) 0.65 0.00153 0.009364
GO:0033674 positive regulation of kinase activity 1.01% (2/198) 4.94 0.001881 0.010276
GO:0140457 protein demethylase activity 1.01% (2/198) 4.94 0.001881 0.010276
GO:0042327 positive regulation of phosphorylation 1.01% (2/198) 4.94 0.001881 0.010276
GO:0045937 positive regulation of phosphate metabolic process 1.01% (2/198) 4.94 0.001881 0.010276
GO:0032454 histone H3K9 demethylase activity 1.01% (2/198) 4.94 0.001881 0.010276
GO:0070076 histone lysine demethylation 1.01% (2/198) 4.94 0.001881 0.010276
GO:0033169 histone H3-K9 demethylation 1.01% (2/198) 4.94 0.001881 0.010276
GO:0016577 histone demethylation 1.01% (2/198) 4.94 0.001881 0.010276
GO:0141052 histone H3 demethylase activity 1.01% (2/198) 4.94 0.001881 0.010276
GO:0032452 histone demethylase activity 1.01% (2/198) 4.94 0.001881 0.010276
GO:0010562 positive regulation of phosphorus metabolic process 1.01% (2/198) 4.94 0.001881 0.010276
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 2.02% (4/198) 2.93 0.001973 0.010688
GO:0071704 organic substance metabolic process 29.29% (58/198) 0.52 0.001791 0.01085
GO:0008234 cysteine-type peptidase activity 3.54% (7/198) 1.99 0.002065 0.011086
GO:0008214 protein dealkylation 1.01% (2/198) 4.83 0.002187 0.011341
GO:0140326 ATPase-coupled intramembrane lipid transporter activity 1.01% (2/198) 4.83 0.002187 0.011341
GO:0006482 protein demethylation 1.01% (2/198) 4.83 0.002187 0.011341
GO:0009987 cellular process 32.83% (65/198) 0.47 0.002134 0.011354
GO:0050789 regulation of biological process 12.63% (25/198) 0.88 0.002274 0.011693
GO:0000375 RNA splicing, via transesterification reactions 2.02% (4/198) 2.86 0.002338 0.011823
GO:0016043 cellular component organization 7.07% (14/198) 1.26 0.002332 0.011892
GO:1905369 endopeptidase complex 1.01% (2/198) 4.73 0.002515 0.012616
GO:0006401 RNA catabolic process 1.52% (3/198) 3.44 0.002687 0.01337
GO:0005575 cellular_component 19.19% (38/198) 0.66 0.002886 0.014131
GO:0019901 protein kinase binding 1.01% (2/198) 4.64 0.002865 0.014139
GO:0110156 methylguanosine-cap decapping 1.01% (2/198) 4.55 0.003236 0.014779
GO:0042176 regulation of protein catabolic process 1.01% (2/198) 4.55 0.003236 0.014779
GO:0140303 intramembrane lipid transporter activity 1.01% (2/198) 4.55 0.003236 0.014779
GO:0110154 RNA decapping 1.01% (2/198) 4.55 0.003236 0.014779
GO:0010468 regulation of gene expression 9.6% (19/198) 1.01 0.003065 0.014887
GO:0009889 regulation of biosynthetic process 9.6% (19/198) 1.01 0.003173 0.015052
GO:0031326 regulation of cellular biosynthetic process 9.6% (19/198) 1.01 0.003173 0.015052
GO:0010556 regulation of macromolecule biosynthetic process 9.6% (19/198) 1.01 0.003136 0.015114
GO:0065007 biological regulation 12.63% (25/198) 0.85 0.003211 0.015119
GO:0006075 (1->3)-beta-D-glucan biosynthetic process 1.01% (2/198) 4.47 0.003628 0.016092
GO:0000148 1,3-beta-D-glucan synthase complex 1.01% (2/198) 4.47 0.003628 0.016092
GO:0006074 (1->3)-beta-D-glucan metabolic process 1.01% (2/198) 4.47 0.003628 0.016092
GO:0015914 phospholipid transport 1.01% (2/198) 4.47 0.003628 0.016092
GO:0008380 RNA splicing 2.02% (4/198) 2.65 0.003918 0.017128
GO:0045184 establishment of protein localization 3.54% (7/198) 1.83 0.003904 0.017191
GO:0000049 tRNA binding 1.01% (2/198) 4.39 0.004042 0.017421
GO:0008641 ubiquitin-like modifier activating enzyme activity 1.01% (2/198) 4.39 0.004042 0.017421
GO:0008186 ATP-dependent activity, acting on RNA 1.52% (3/198) 3.2 0.004313 0.018331
GO:0003724 RNA helicase activity 1.52% (3/198) 3.2 0.004313 0.018331
GO:0003843 1,3-beta-D-glucan synthase activity 1.01% (2/198) 4.32 0.004476 0.01851
GO:0070727 cellular macromolecule localization 3.54% (7/198) 1.79 0.00447 0.01861
GO:0008104 protein localization 3.54% (7/198) 1.79 0.00447 0.01861
GO:0033036 macromolecule localization 3.54% (7/198) 1.79 0.00447 0.01861
GO:0050794 regulation of cellular process 11.62% (23/198) 0.85 0.004598 0.018884
GO:0031323 regulation of cellular metabolic process 9.6% (19/198) 0.95 0.00494 0.020021
GO:0043412 macromolecule modification 11.11% (22/198) 0.86 0.004975 0.020031
GO:0060147 regulation of post-transcriptional gene silencing 0.51% (1/198) 7.64 0.005013 0.020052
GO:0071840 cellular component organization or biogenesis 7.07% (14/198) 1.14 0.005062 0.020117
GO:0030015 CCR4-NOT core complex 1.01% (2/198) 4.25 0.004931 0.02012
GO:0051347 positive regulation of transferase activity 1.01% (2/198) 4.18 0.005407 0.021076
GO:0051020 GTPase binding 1.01% (2/198) 4.18 0.005407 0.021076
GO:0031267 small GTPase binding 1.01% (2/198) 4.18 0.005407 0.021076
GO:0044877 protein-containing complex binding 2.02% (4/198) 2.5 0.005667 0.02195
GO:0009894 regulation of catabolic process 1.01% (2/198) 4.12 0.005902 0.022718
GO:0006913 nucleocytoplasmic transport 1.52% (3/198) 3.04 0.005965 0.022815
GO:0004519 endonuclease activity 1.52% (3/198) 3.02 0.006194 0.023545
GO:0051168 nuclear export 1.01% (2/198) 4.06 0.006418 0.024244
GO:0017111 ribonucleoside triphosphate phosphatase activity 4.55% (9/198) 1.43 0.006682 0.025088
GO:0005319 lipid transporter activity 1.01% (2/198) 4.0 0.006953 0.025946
GO:1990234 transferase complex 2.53% (5/198) 2.07 0.007053 0.026159
GO:0008152 metabolic process 29.29% (58/198) 0.43 0.007635 0.02815
GO:0003824 catalytic activity 35.35% (70/198) 0.37 0.007891 0.028917
GO:0043022 ribosome binding 1.01% (2/198) 3.89 0.008082 0.02944
GO:0006886 intracellular protein transport 2.53% (5/198) 2.01 0.008486 0.03073
GO:0003714 transcription corepressor activity 1.01% (2/198) 3.83 0.008675 0.030866
GO:0016891 RNA endonuclease activity, producing 5'-phosphomonoesters 1.01% (2/198) 3.83 0.008675 0.030866
GO:0016877 ligase activity, forming carbon-sulfur bonds 1.01% (2/198) 3.83 0.008675 0.030866
GO:0006906 vesicle fusion 0.51% (1/198) 6.64 0.010001 0.032556
GO:0031499 TRAMP complex 0.51% (1/198) 6.64 0.010001 0.032556
GO:0030623 U5 snRNA binding 0.51% (1/198) 6.64 0.010001 0.032556
GO:0004651 polynucleotide 5'-phosphatase activity 0.51% (1/198) 6.64 0.010001 0.032556
GO:0061025 membrane fusion 0.51% (1/198) 6.64 0.010001 0.032556
GO:0048280 vesicle fusion with Golgi apparatus 0.51% (1/198) 6.64 0.010001 0.032556
GO:0004484 mRNA guanylyltransferase activity 0.51% (1/198) 6.64 0.010001 0.032556
GO:0090174 organelle membrane fusion 0.51% (1/198) 6.64 0.010001 0.032556
GO:0048284 organelle fusion 0.51% (1/198) 6.64 0.010001 0.032556
GO:0043399 tRNA A64-2'-O-ribosylphosphate transferase activity 0.51% (1/198) 6.64 0.010001 0.032556
GO:0042779 obsolete tRNA 3'-trailer cleavage 0.51% (1/198) 6.64 0.010001 0.032556
GO:0071702 organic substance transport 4.04% (8/198) 1.46 0.009453 0.033441
GO:1905368 peptidase complex 1.01% (2/198) 3.69 0.010567 0.034216
GO:0043549 regulation of kinase activity 1.01% (2/198) 3.73 0.009917 0.034291
GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 1.01% (2/198) 3.73 0.009917 0.034291
GO:0042325 regulation of phosphorylation 1.01% (2/198) 3.73 0.009917 0.034291
GO:0006399 tRNA metabolic process 2.02% (4/198) 2.27 0.009751 0.034296
GO:0016462 pyrophosphatase activity 4.55% (9/198) 1.32 0.010699 0.034462
GO:0098797 plasma membrane protein complex 1.01% (2/198) 3.64 0.011234 0.03581
GO:0019900 kinase binding 1.01% (2/198) 3.64 0.011234 0.03581
GO:0034654 nucleobase-containing compound biosynthetic process 3.54% (7/198) 1.53 0.011476 0.03639
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 4.55% (9/198) 1.3 0.011916 0.037589
GO:0043085 positive regulation of catalytic activity 1.01% (2/198) 3.55 0.012624 0.039417
GO:0016817 hydrolase activity, acting on acid anhydrides 4.55% (9/198) 1.28 0.012612 0.039582
GO:0034660 ncRNA metabolic process 2.53% (5/198) 1.85 0.013206 0.041024
GO:0015748 organophosphate ester transport 1.01% (2/198) 3.51 0.013345 0.041248
GO:0019887 protein kinase regulator activity 1.01% (2/198) 3.47 0.014084 0.043313
GO:0000347 THO complex 0.51% (1/198) 6.06 0.014964 0.044028
GO:0019988 charged-tRNA amino acid modification 0.51% (1/198) 6.06 0.014964 0.044028
GO:0000245 spliceosomal complex assembly 0.51% (1/198) 6.06 0.014964 0.044028
GO:0006370 7-methylguanosine mRNA capping 0.51% (1/198) 6.06 0.014964 0.044028
GO:0017070 U6 snRNA binding 0.51% (1/198) 6.06 0.014964 0.044028
GO:0008441 3'(2'),5'-bisphosphate nucleotidase activity 0.51% (1/198) 6.06 0.014964 0.044028
GO:0006611 protein export from nucleus 0.51% (1/198) 6.06 0.014964 0.044028
GO:0008192 RNA guanylyltransferase activity 0.51% (1/198) 6.06 0.014964 0.044028
GO:0030120 vesicle coat 1.01% (2/198) 3.43 0.01484 0.045411
GO:0016787 hydrolase activity 13.13% (26/198) 0.64 0.01568 0.045915
GO:0008233 peptidase activity 5.05% (10/198) 1.15 0.01581 0.046075
GO:0044093 positive regulation of molecular function 1.01% (2/198) 3.35 0.016404 0.047579
GO:0030234 enzyme regulator activity 3.03% (6/198) 1.56 0.017014 0.049116
GO:0048193 Golgi vesicle transport 1.52% (3/198) 2.47 0.017241 0.049306
GO:0005681 spliceosomal complex 1.01% (2/198) 3.32 0.017211 0.049451
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (198) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms