Coexpression cluster: Cluster_192 (Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006399 tRNA metabolic process 9.49% (13/137) 4.51 0.0 0.0
GO:0140101 catalytic activity, acting on a tRNA 8.03% (11/137) 4.64 0.0 0.0
GO:0034660 ncRNA metabolic process 10.22% (14/137) 3.87 0.0 0.0
GO:0043039 tRNA aminoacylation 7.3% (10/137) 4.99 0.0 0.0
GO:0016875 ligase activity, forming carbon-oxygen bonds 7.3% (10/137) 4.99 0.0 0.0
GO:0004812 aminoacyl-tRNA ligase activity 7.3% (10/137) 4.99 0.0 0.0
GO:0043038 amino acid activation 7.3% (10/137) 4.99 0.0 0.0
GO:0006418 tRNA aminoacylation for protein translation 7.3% (10/137) 5.02 0.0 0.0
GO:0006082 organic acid metabolic process 13.14% (18/137) 2.9 0.0 0.0
GO:0043436 oxoacid metabolic process 13.14% (18/137) 2.9 0.0 0.0
GO:0019752 carboxylic acid metabolic process 13.14% (18/137) 2.9 0.0 0.0
GO:0140098 catalytic activity, acting on RNA 10.22% (14/137) 3.25 0.0 0.0
GO:0044281 small molecule metabolic process 15.33% (21/137) 2.41 0.0 0.0
GO:0016874 ligase activity 8.03% (11/137) 3.71 0.0 0.0
GO:0006520 amino acid metabolic process 9.49% (13/137) 3.28 0.0 0.0
GO:0036094 small molecule binding 26.28% (36/137) 1.47 0.0 0.0
GO:0008152 metabolic process 43.07% (59/137) 0.99 0.0 1e-06
GO:0044237 cellular metabolic process 34.31% (47/137) 1.18 0.0 1e-06
GO:0034641 cellular nitrogen compound metabolic process 21.9% (30/137) 1.59 0.0 1e-06
GO:0043167 ion binding 31.39% (43/137) 1.19 0.0 3e-06
GO:0016070 RNA metabolic process 12.41% (17/137) 2.27 0.0 3e-06
GO:1901363 heterocyclic compound binding 24.82% (34/137) 1.4 0.0 3e-06
GO:0005488 binding 53.28% (73/137) 0.75 0.0 3e-06
GO:0043168 anion binding 24.09% (33/137) 1.41 0.0 4e-06
GO:0003674 molecular_function 73.72% (101/137) 0.5 0.0 5e-06
GO:0009987 cellular process 43.07% (59/137) 0.86 0.0 8e-06
GO:0017076 purine nucleotide binding 22.63% (31/137) 1.4 0.0 9e-06
GO:0046483 heterocycle metabolic process 18.25% (25/137) 1.63 0.0 9e-06
GO:0000166 nucleotide binding 23.36% (32/137) 1.38 0.0 9e-06
GO:1901265 nucleoside phosphate binding 23.36% (32/137) 1.38 0.0 9e-06
GO:0071704 organic substance metabolic process 38.69% (53/137) 0.92 1e-06 1.3e-05
GO:1901360 organic cyclic compound metabolic process 18.25% (25/137) 1.59 1e-06 1.3e-05
GO:0006725 cellular aromatic compound metabolic process 17.52% (24/137) 1.56 2e-06 3.2e-05
GO:0035639 purine ribonucleoside triphosphate binding 20.44% (28/137) 1.4 2e-06 3.3e-05
GO:1901564 organonitrogen compound metabolic process 26.28% (36/137) 1.15 3e-06 4.7e-05
GO:0097159 organic cyclic compound binding 35.77% (49/137) 0.91 3e-06 4.7e-05
GO:0044238 primary metabolic process 35.77% (49/137) 0.91 3e-06 4.8e-05
GO:0032555 purine ribonucleotide binding 20.44% (28/137) 1.34 4e-06 6.7e-05
GO:0032553 ribonucleotide binding 20.44% (28/137) 1.32 5e-06 7.5e-05
GO:0140640 catalytic activity, acting on a nucleic acid 10.22% (14/137) 2.11 5e-06 7.6e-05
GO:0003824 catalytic activity 45.26% (62/137) 0.73 5e-06 7.6e-05
GO:0097367 carbohydrate derivative binding 20.44% (28/137) 1.31 6e-06 8.5e-05
GO:0030785 [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity 1.46% (2/137) 8.17 1.2e-05 0.000162
GO:0006807 nitrogen compound metabolic process 30.66% (42/137) 0.94 1.3e-05 0.000178
GO:0006139 nucleobase-containing compound metabolic process 15.33% (21/137) 1.5 1.6e-05 0.000205
GO:0005525 GTP binding 5.84% (8/137) 2.85 1.7e-05 0.000209
GO:0032561 guanyl ribonucleotide binding 5.84% (8/137) 2.85 1.7e-05 0.000209
GO:0019001 guanyl nucleotide binding 5.84% (8/137) 2.84 1.8e-05 0.000224
GO:0005737 cytoplasm 5.11% (7/137) 3.08 2.1e-05 0.000256
GO:0031177 phosphopantetheine binding 1.46% (2/137) 7.59 3.6e-05 0.00041
GO:0051920 peroxiredoxin activity 1.46% (2/137) 7.59 3.6e-05 0.00041
GO:0000049 tRNA binding 2.19% (3/137) 5.51 3.8e-05 0.000427
GO:1901576 organic substance biosynthetic process 13.87% (19/137) 1.45 6.8e-05 0.000746
GO:0006432 phenylalanyl-tRNA aminoacylation 1.46% (2/137) 7.17 7.1e-05 0.000759
GO:0004826 phenylalanine-tRNA ligase activity 1.46% (2/137) 7.17 7.1e-05 0.000759
GO:0044249 cellular biosynthetic process 13.14% (18/137) 1.49 7.4e-05 0.000769
GO:0090304 nucleic acid metabolic process 12.41% (17/137) 1.5 0.000107 0.0011
GO:0072341 modified amino acid binding 1.46% (2/137) 6.85 0.000119 0.001196
GO:0030554 adenyl nucleotide binding 17.52% (24/137) 1.18 0.000129 0.00128
GO:0140104 molecular carrier activity 2.19% (3/137) 4.9 0.00014 0.001361
GO:0009058 biosynthetic process 13.87% (19/137) 1.36 0.000144 0.001381
GO:0004618 phosphoglycerate kinase activity 1.46% (2/137) 6.59 0.000178 0.001675
GO:0003723 RNA binding 8.76% (12/137) 1.76 0.000241 0.00224
GO:0004176 ATP-dependent peptidase activity 2.19% (3/137) 4.55 0.000291 0.002659
GO:0008150 biological_process 51.82% (71/137) 0.48 0.000301 0.00271
GO:0051192 prosthetic group binding 1.46% (2/137) 6.17 0.00033 0.002757
GO:0000036 acyl carrier activity 1.46% (2/137) 6.17 0.00033 0.002757
GO:0044620 ACP phosphopantetheine attachment site binding 1.46% (2/137) 6.17 0.00033 0.002757
GO:0140414 phosphopantetheine-dependent carrier activity 1.46% (2/137) 6.17 0.00033 0.002757
GO:0044271 cellular nitrogen compound biosynthetic process 9.49% (13/137) 1.63 0.000325 0.002879
GO:1901566 organonitrogen compound biosynthetic process 8.76% (12/137) 1.67 0.000416 0.003432
GO:0033014 tetrapyrrole biosynthetic process 2.19% (3/137) 4.33 0.000455 0.003698
GO:0005524 ATP binding 15.33% (21/137) 1.14 0.000513 0.00411
GO:0008237 metallopeptidase activity 2.92% (4/137) 3.23 0.000914 0.007034
GO:0015038 glutathione disulfide oxidoreductase activity 1.46% (2/137) 5.47 0.000909 0.007086
GO:0002161 aminoacyl-tRNA editing activity 1.46% (2/137) 5.47 0.000909 0.007086
GO:0016462 pyrophosphatase activity 6.57% (9/137) 1.85 0.000939 0.00713
GO:0032559 adenyl ribonucleotide binding 15.33% (21/137) 1.07 0.000954 0.007156
GO:0033013 tetrapyrrole metabolic process 2.19% (3/137) 3.95 0.000989 0.007325
GO:0018193 peptidyl-amino acid modification 2.92% (4/137) 3.18 0.001029 0.007526
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 6.57% (9/137) 1.83 0.001063 0.007679
GO:0016817 hydrolase activity, acting on acid anhydrides 6.57% (9/137) 1.81 0.001136 0.008103
GO:0016279 protein-lysine N-methyltransferase activity 1.46% (2/137) 5.26 0.001217 0.008479
GO:0016278 lysine N-methyltransferase activity 1.46% (2/137) 5.26 0.001217 0.008479
GO:0043170 macromolecule metabolic process 24.09% (33/137) 0.77 0.001283 0.008827
GO:0004222 metalloendopeptidase activity 2.19% (3/137) 3.78 0.001392 0.009471
GO:0016209 antioxidant activity 3.65% (5/137) 2.59 0.00152 0.010222
GO:0016774 phosphotransferase activity, carboxyl group as acceptor 1.46% (2/137) 4.92 0.001965 0.013061
GO:0008033 tRNA processing 2.19% (3/137) 3.55 0.002211 0.01453
GO:0019842 vitamin binding 2.92% (4/137) 2.88 0.00224 0.014558
GO:0017111 ribonucleoside triphosphate phosphatase activity 5.84% (8/137) 1.79 0.002318 0.014738
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 2.19% (3/137) 3.53 0.002297 0.014765
GO:0019898 extrinsic component of membrane 1.46% (2/137) 4.78 0.002402 0.015109
GO:0016859 cis-trans isomerase activity 2.19% (3/137) 3.49 0.002476 0.015407
GO:1990204 oxidoreductase complex 2.19% (3/137) 3.45 0.002663 0.016398
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 2.19% (3/137) 3.38 0.003063 0.018665
GO:0009408 response to heat 1.46% (2/137) 4.59 0.003135 0.018909
GO:0050515 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity 0.73% (1/137) 8.17 0.003469 0.02009
GO:0016869 intramolecular aminotransferase activity 0.73% (1/137) 8.17 0.003469 0.02009
GO:0042286 glutamate-1-semialdehyde 2,1-aminomutase activity 0.73% (1/137) 8.17 0.003469 0.02009
GO:0004655 porphobilinogen synthase activity 0.73% (1/137) 8.17 0.003469 0.02009
GO:0034470 ncRNA processing 2.92% (4/137) 2.67 0.003731 0.021192
GO:0043414 macromolecule methylation 2.19% (3/137) 3.28 0.003729 0.021387
GO:0018022 peptidyl-lysine methylation 1.46% (2/137) 4.42 0.00396 0.022277
GO:0009507 chloroplast 1.46% (2/137) 4.36 0.004255 0.023485
GO:0016853 isomerase activity 3.65% (5/137) 2.25 0.004215 0.023486
GO:0019637 organophosphate metabolic process 5.11% (7/137) 1.79 0.004361 0.023844
GO:0009536 plastid 1.46% (2/137) 4.31 0.00456 0.024475
GO:0009654 photosystem II oxygen evolving complex 1.46% (2/137) 4.31 0.00456 0.024475
GO:0019438 aromatic compound biosynthetic process 5.11% (7/137) 1.72 0.005702 0.030326
GO:0033218 amide binding 1.46% (2/137) 4.13 0.005877 0.030974
GO:0004385 guanylate kinase activity 0.73% (1/137) 7.17 0.006925 0.031163
GO:0031071 cysteine desulfurase activity 0.73% (1/137) 7.17 0.006925 0.031163
GO:0004418 hydroxymethylbilane synthase activity 0.73% (1/137) 7.17 0.006925 0.031163
GO:0010028 xanthophyll cycle 0.73% (1/137) 7.17 0.006925 0.031163
GO:0018160 peptidyl-pyrromethane cofactor linkage 0.73% (1/137) 7.17 0.006925 0.031163
GO:0018198 peptidyl-cysteine modification 0.73% (1/137) 7.17 0.006925 0.031163
GO:0016122 xanthophyll metabolic process 0.73% (1/137) 7.17 0.006925 0.031163
GO:0043100 pyrimidine nucleobase salvage 0.73% (1/137) 7.17 0.006925 0.031163
GO:0008655 pyrimidine-containing compound salvage 0.73% (1/137) 7.17 0.006925 0.031163
GO:0004830 tryptophan-tRNA ligase activity 0.73% (1/137) 7.17 0.006925 0.031163
GO:0006436 tryptophanyl-tRNA aminoacylation 0.73% (1/137) 7.17 0.006925 0.031163
GO:0004845 uracil phosphoribosyltransferase activity 0.73% (1/137) 7.17 0.006925 0.031163
GO:0046107 uracil biosynthetic process 0.73% (1/137) 7.17 0.006925 0.031163
GO:0006223 uracil salvage 0.73% (1/137) 7.17 0.006925 0.031163
GO:0046422 violaxanthin de-epoxidase activity 0.73% (1/137) 7.17 0.006925 0.031163
GO:0046434 organophosphate catabolic process 2.19% (3/137) 2.95 0.007064 0.031547
GO:0018130 heterocycle biosynthetic process 5.11% (7/137) 1.7 0.006056 0.031629
GO:0009266 response to temperature stimulus 1.46% (2/137) 4.08 0.00623 0.031971
GO:0015036 disulfide oxidoreductase activity 1.46% (2/137) 4.08 0.00623 0.031971
GO:0044255 cellular lipid metabolic process 4.38% (6/137) 1.82 0.007363 0.032629
GO:0110165 cellular anatomical entity 15.33% (21/137) 0.82 0.007716 0.033939
GO:0032259 methylation 2.19% (3/137) 2.9 0.007778 0.033955
GO:0016491 oxidoreductase activity 9.49% (13/137) 1.13 0.00677 0.034437
GO:0008276 protein methyltransferase activity 1.46% (2/137) 3.89 0.008137 0.03526
GO:0008173 RNA methyltransferase activity 1.46% (2/137) 3.81 0.008964 0.038558
GO:0004823 leucine-tRNA ligase activity 0.73% (1/137) 6.59 0.01037 0.038887
GO:0006429 leucyl-tRNA aminoacylation 0.73% (1/137) 6.59 0.01037 0.038887
GO:0004821 histidine-tRNA ligase activity 0.73% (1/137) 6.59 0.01037 0.038887
GO:0004816 asparagine-tRNA ligase activity 0.73% (1/137) 6.59 0.01037 0.038887
GO:0006428 isoleucyl-tRNA aminoacylation 0.73% (1/137) 6.59 0.01037 0.038887
GO:0008441 3'(2'),5'-bisphosphate nucleotidase activity 0.73% (1/137) 6.59 0.01037 0.038887
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 0.73% (1/137) 6.59 0.01037 0.038887
GO:0006421 asparaginyl-tRNA aminoacylation 0.73% (1/137) 6.59 0.01037 0.038887
GO:0019860 uracil metabolic process 0.73% (1/137) 6.59 0.01037 0.038887
GO:0004366 glycerol-3-phosphate O-acyltransferase activity 0.73% (1/137) 6.59 0.01037 0.038887
GO:0050307 sucrose-phosphate phosphatase activity 0.73% (1/137) 6.59 0.01037 0.038887
GO:0006427 histidyl-tRNA aminoacylation 0.73% (1/137) 6.59 0.01037 0.038887
GO:0016776 phosphotransferase activity, phosphate group as acceptor 1.46% (2/137) 3.78 0.009391 0.039809
GO:0009523 photosystem II 1.46% (2/137) 3.78 0.009391 0.039809
GO:0004175 endopeptidase activity 3.65% (5/137) 1.96 0.009592 0.040081
GO:1901362 organic cyclic compound biosynthetic process 5.11% (7/137) 1.58 0.00957 0.040275
GO:1901136 carbohydrate derivative catabolic process 2.19% (3/137) 2.78 0.009742 0.040418
GO:0019205 nucleobase-containing compound kinase activity 1.46% (2/137) 3.65 0.011187 0.041685
GO:0055086 nucleobase-containing small molecule metabolic process 3.65% (5/137) 1.94 0.010123 0.041704
GO:0090150 establishment of protein localization to membrane 1.46% (2/137) 3.71 0.010271 0.041728
GO:0072657 protein localization to membrane 1.46% (2/137) 3.71 0.010271 0.041728
GO:0008170 N-methyltransferase activity 1.46% (2/137) 3.62 0.011658 0.043164
GO:0003676 nucleic acid binding 15.33% (21/137) 0.76 0.011907 0.04381
GO:0019867 outer membrane 1.46% (2/137) 3.56 0.012625 0.045312
GO:0008213 protein alkylation 1.46% (2/137) 3.56 0.012625 0.045312
GO:0018205 peptidyl-lysine modification 1.46% (2/137) 3.56 0.012625 0.045312
GO:0006479 protein methylation 1.46% (2/137) 3.56 0.012625 0.045312
GO:0033355 ascorbate glutathione cycle 0.73% (1/137) 6.17 0.013803 0.045619
GO:0019852 L-ascorbic acid metabolic process 0.73% (1/137) 6.17 0.013803 0.045619
GO:0080183 response to photooxidative stress 0.73% (1/137) 6.17 0.013803 0.045619
GO:0016672 oxidoreductase activity, acting on a sulfur group of donors, quinone or similar compound as acceptor 0.73% (1/137) 6.17 0.013803 0.045619
GO:0006430 lysyl-tRNA aminoacylation 0.73% (1/137) 6.17 0.013803 0.045619
GO:0070402 NADPH binding 0.73% (1/137) 6.17 0.013803 0.045619
GO:0004809 obsolete tRNA (guanine-N2-)-methyltransferase activity 0.73% (1/137) 6.17 0.013803 0.045619
GO:0004824 lysine-tRNA ligase activity 0.73% (1/137) 6.17 0.013803 0.045619
GO:0045174 glutathione dehydrogenase (ascorbate) activity 0.73% (1/137) 6.17 0.013803 0.045619
GO:0006400 tRNA modification 1.46% (2/137) 3.53 0.013122 0.046807
GO:0008483 transaminase activity 1.46% (2/137) 3.5 0.013627 0.047735
GO:0016769 transferase activity, transferring nitrogenous groups 1.46% (2/137) 3.5 0.013627 0.047735
GO:0031072 heat shock protein binding 1.46% (2/137) 3.5 0.013627 0.047735
GO:0032787 monocarboxylic acid metabolic process 2.92% (4/137) 2.13 0.013709 0.047738
GO:0009205 purine ribonucleoside triphosphate metabolic process 2.19% (3/137) 2.54 0.015268 0.048808
GO:0009144 purine nucleoside triphosphate metabolic process 2.19% (3/137) 2.54 0.015268 0.048808
GO:0072528 pyrimidine-containing compound biosynthetic process 1.46% (2/137) 3.42 0.015191 0.049099
GO:0003924 GTPase activity 2.92% (4/137) 2.09 0.014954 0.049146
GO:0006629 lipid metabolic process 5.11% (7/137) 1.44 0.015182 0.049343
GO:0006163 purine nucleotide metabolic process 2.92% (4/137) 2.08 0.015137 0.049471
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (137) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms