Coexpression cluster: Cluster_194 (Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity 7.14% (3/42) 8.29 0.0 7e-06
GO:0006529 asparagine biosynthetic process 7.14% (3/42) 8.29 0.0 7e-06
GO:0006528 asparagine metabolic process 7.14% (3/42) 8.29 0.0 7e-06
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor 7.14% (3/42) 7.37 1e-06 2.8e-05
GO:0016053 organic acid biosynthetic process 14.29% (6/42) 4.24 1e-06 3.2e-05
GO:0046394 carboxylic acid biosynthetic process 14.29% (6/42) 4.24 1e-06 3.2e-05
GO:0044283 small molecule biosynthetic process 14.29% (6/42) 3.88 3e-06 9.7e-05
GO:0048830 adventitious root development 4.76% (2/42) 8.88 7e-06 0.000183
GO:0009067 aspartate family amino acid biosynthetic process 7.14% (3/42) 5.85 2e-05 0.000489
GO:0009066 aspartate family amino acid metabolic process 7.14% (3/42) 5.76 2.4e-05 0.000527
GO:0003700 DNA-binding transcription factor activity 19.05% (8/42) 2.62 3.8e-05 0.000759
GO:0016297 acyl-[acyl-carrier-protein] hydrolase activity 4.76% (2/42) 7.42 6e-05 0.001026
GO:0140110 transcription regulator activity 19.05% (8/42) 2.53 5.8e-05 0.001076
GO:0008150 biological_process 66.67% (28/42) 0.85 9.5e-05 0.001108
GO:0006082 organic acid metabolic process 14.29% (6/42) 3.02 9e-05 0.001108
GO:0043436 oxoacid metabolic process 14.29% (6/42) 3.02 9e-05 0.001164
GO:0019752 carboxylic acid metabolic process 14.29% (6/42) 3.02 8.9e-05 0.001227
GO:0065007 biological regulation 26.19% (11/42) 1.9 0.000112 0.001235
GO:0016879 ligase activity, forming carbon-nitrogen bonds 7.14% (3/42) 5.18 8e-05 0.00127
GO:0016874 ligase activity 9.52% (4/42) 3.96 0.000128 0.001287
GO:0006633 fatty acid biosynthetic process 7.14% (3/42) 4.97 0.000123 0.001296
GO:0050789 regulation of biological process 26.19% (11/42) 1.94 8.8e-05 0.001301
GO:0072330 monocarboxylic acid biosynthetic process 7.14% (3/42) 4.82 0.000168 0.001617
GO:0050794 regulation of cellular process 23.81% (10/42) 1.88 0.000267 0.002456
GO:1901607 alpha-amino acid biosynthetic process 7.14% (3/42) 4.46 0.000348 0.003076
GO:0006631 fatty acid metabolic process 7.14% (3/42) 4.43 0.000372 0.003165
GO:0008652 amino acid biosynthetic process 7.14% (3/42) 4.27 0.000511 0.004033
GO:0048364 root development 4.76% (2/42) 5.92 0.000503 0.00412
GO:0016790 thiolester hydrolase activity 4.76% (2/42) 5.48 0.000925 0.00705
GO:1901605 alpha-amino acid metabolic process 7.14% (3/42) 3.92 0.00103 0.007591
GO:0044281 small molecule metabolic process 14.29% (6/42) 2.31 0.001226 0.008737
GO:0099402 plant organ development 4.76% (2/42) 5.18 0.001415 0.009773
GO:0051252 regulation of RNA metabolic process 16.67% (7/42) 1.93 0.002166 0.013295
GO:0004802 transketolase activity 2.38% (1/42) 8.88 0.002126 0.013422
GO:0019219 regulation of nucleobase-containing compound metabolic process 16.67% (7/42) 1.91 0.002288 0.013668
GO:2001141 regulation of RNA biosynthetic process 16.67% (7/42) 1.93 0.00211 0.013714
GO:0006355 regulation of DNA-templated transcription 16.67% (7/42) 1.93 0.00211 0.013714
GO:0032787 monocarboxylic acid metabolic process 7.14% (3/42) 3.42 0.002796 0.016258
GO:0009889 regulation of biosynthetic process 16.67% (7/42) 1.8 0.003495 0.017166
GO:0031326 regulation of cellular biosynthetic process 16.67% (7/42) 1.8 0.003495 0.017166
GO:0010556 regulation of macromolecule biosynthetic process 16.67% (7/42) 1.8 0.003475 0.01786
GO:0080090 regulation of primary metabolic process 16.67% (7/42) 1.82 0.003266 0.018045
GO:0051171 regulation of nitrogen compound metabolic process 16.67% (7/42) 1.82 0.003208 0.01818
GO:0003674 molecular_function 73.81% (31/42) 0.5 0.003469 0.018253
GO:0038199 ethylene receptor activity 2.38% (1/42) 7.88 0.004247 0.018403
GO:0009723 response to ethylene 2.38% (1/42) 7.88 0.004247 0.018403
GO:0019781 NEDD8 activating enzyme activity 2.38% (1/42) 7.88 0.004247 0.018403
GO:0051740 ethylene binding 2.38% (1/42) 7.88 0.004247 0.018403
GO:0045116 protein neddylation 2.38% (1/42) 7.88 0.004247 0.018403
GO:0010468 regulation of gene expression 16.67% (7/42) 1.81 0.003434 0.018513
GO:0031323 regulation of cellular metabolic process 16.67% (7/42) 1.74 0.00439 0.018659
GO:0060255 regulation of macromolecule metabolic process 16.67% (7/42) 1.74 0.004489 0.018717
GO:0019222 regulation of metabolic process 16.67% (7/42) 1.72 0.004768 0.019512
GO:0046983 protein dimerization activity 9.52% (4/42) 2.6 0.004172 0.020046
GO:0046168 glycerol-3-phosphate catabolic process 2.38% (1/42) 7.56 0.005306 0.021319
GO:0006825 copper ion transport 2.38% (1/42) 7.29 0.006364 0.023439
GO:0035434 copper ion transmembrane transport 2.38% (1/42) 7.29 0.006364 0.023439
GO:0005375 copper ion transmembrane transporter activity 2.38% (1/42) 7.29 0.006364 0.023439
GO:0009331 glycerol-3-phosphate dehydrogenase complex 2.38% (1/42) 7.29 0.006364 0.023439
GO:0008610 lipid biosynthetic process 7.14% (3/42) 2.96 0.006779 0.024561
GO:0051287 NAD binding 4.76% (2/42) 4.08 0.006262 0.024713
GO:0052646 alditol phosphate metabolic process 2.38% (1/42) 7.07 0.00742 0.02603
GO:0006072 glycerol-3-phosphate metabolic process 2.38% (1/42) 7.07 0.00742 0.02603
GO:0006520 amino acid metabolic process 7.14% (3/42) 2.87 0.007962 0.027072
GO:0051192 prosthetic group binding 2.38% (1/42) 6.88 0.008476 0.027148
GO:0000036 acyl carrier activity 2.38% (1/42) 6.88 0.008476 0.027148
GO:0140414 phosphopantetheine-dependent carrier activity 2.38% (1/42) 6.88 0.008476 0.027148
GO:0044620 ACP phosphopantetheine attachment site binding 2.38% (1/42) 6.88 0.008476 0.027148
GO:0000160 phosphorelay signal transduction system 4.76% (2/42) 3.91 0.007875 0.027194
GO:0048856 anatomical structure development 4.76% (2/42) 3.67 0.010885 0.034365
GO:0033169 histone H3-K9 demethylation 2.38% (1/42) 6.18 0.013738 0.036143
GO:0032452 histone demethylase activity 2.38% (1/42) 6.18 0.013738 0.036143
GO:0032454 histone H3K9 demethylase activity 2.38% (1/42) 6.18 0.013738 0.036143
GO:0016577 histone demethylation 2.38% (1/42) 6.18 0.013738 0.036143
GO:0042802 identical protein binding 2.38% (1/42) 6.18 0.013738 0.036143
GO:0004470 malic enzyme activity 2.38% (1/42) 6.18 0.013738 0.036143
GO:0042803 protein homodimerization activity 2.38% (1/42) 6.18 0.013738 0.036143
GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity 2.38% (1/42) 6.18 0.013738 0.036143
GO:0070076 histone lysine demethylation 2.38% (1/42) 6.18 0.013738 0.036143
GO:0140457 protein demethylase activity 2.38% (1/42) 6.18 0.013738 0.036143
GO:0141052 histone H3 demethylase activity 2.38% (1/42) 6.18 0.013738 0.036143
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 4.76% (2/42) 3.61 0.011741 0.036547
GO:0006482 protein demethylation 2.38% (1/42) 6.07 0.014787 0.036718
GO:0042127 regulation of cell population proliferation 2.38% (1/42) 6.07 0.014787 0.036718
GO:0008214 protein dealkylation 2.38% (1/42) 6.07 0.014787 0.036718
GO:0008285 negative regulation of cell population proliferation 2.38% (1/42) 6.07 0.014787 0.036718
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 4.76% (2/42) 3.41 0.015287 0.037125
GO:0044255 cellular lipid metabolic process 7.14% (3/42) 2.53 0.015147 0.037193
GO:0007165 signal transduction 7.14% (3/42) 2.54 0.01474 0.038323
GO:0044249 cellular biosynthetic process 14.29% (6/42) 1.61 0.012815 0.038796
GO:0016744 transketolase or transaldolase activity 2.38% (1/42) 6.29 0.012688 0.038944
GO:0003677 DNA binding 14.29% (6/42) 1.51 0.017378 0.041745
GO:1901576 organic substance biosynthetic process 14.29% (6/42) 1.49 0.018665 0.044355
GO:0070988 demethylation 2.38% (1/42) 5.63 0.020016 0.046563
GO:0008641 ubiquitin-like modifier activating enzyme activity 2.38% (1/42) 5.63 0.020016 0.046563
GO:0035556 intracellular signal transduction 4.76% (2/42) 3.18 0.020696 0.047644
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (42) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms