Coexpression cluster: Cluster_217 (Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016192 vesicle-mediated transport 17.18% (28/163) 4.12 0.0 0.0
GO:0051649 establishment of localization in cell 16.56% (27/163) 4.04 0.0 0.0
GO:0046907 intracellular transport 16.56% (27/163) 4.05 0.0 0.0
GO:0051641 cellular localization 17.18% (28/163) 3.61 0.0 0.0
GO:0015031 protein transport 14.11% (23/163) 4.0 0.0 0.0
GO:0006886 intracellular protein transport 12.27% (20/163) 4.29 0.0 0.0
GO:0045184 establishment of protein localization 14.11% (23/163) 3.82 0.0 0.0
GO:0070727 cellular macromolecule localization 14.11% (23/163) 3.79 0.0 0.0
GO:0033036 macromolecule localization 14.11% (23/163) 3.79 0.0 0.0
GO:0008104 protein localization 14.11% (23/163) 3.79 0.0 0.0
GO:0030119 AP-type membrane coat adaptor complex 6.75% (11/163) 6.52 0.0 0.0
GO:0030117 membrane coat 8.59% (14/163) 5.39 0.0 0.0
GO:0071705 nitrogen compound transport 14.11% (23/163) 3.57 0.0 0.0
GO:0006810 transport 23.93% (39/163) 2.34 0.0 0.0
GO:0051234 establishment of localization 23.93% (39/163) 2.3 0.0 0.0
GO:0051179 localization 23.93% (39/163) 2.29 0.0 0.0
GO:0098796 membrane protein complex 12.27% (20/163) 3.68 0.0 0.0
GO:0030131 clathrin adaptor complex 5.52% (9/163) 6.57 0.0 0.0
GO:0071702 organic substance transport 14.11% (23/163) 3.26 0.0 0.0
GO:0032991 protein-containing complex 20.86% (34/163) 2.29 0.0 0.0
GO:0005575 cellular_component 29.45% (48/163) 1.28 0.0 0.0
GO:0030121 AP-1 adaptor complex 2.45% (4/163) 7.34 0.0 0.0
GO:0042147 retrograde transport, endosome to Golgi 3.07% (5/163) 6.16 0.0 0.0
GO:0016482 cytosolic transport 3.07% (5/163) 6.16 0.0 0.0
GO:0051020 GTPase binding 3.07% (5/163) 5.78 0.0 1e-06
GO:0031267 small GTPase binding 3.07% (5/163) 5.78 0.0 1e-06
GO:0048193 Golgi vesicle transport 4.29% (7/163) 3.97 0.0 6e-06
GO:0036402 proteasome-activating activity 2.45% (4/163) 6.01 0.0 6e-06
GO:0030120 vesicle coat 3.07% (5/163) 5.03 0.0 7e-06
GO:0030163 protein catabolic process 3.68% (6/163) 4.34 1e-06 9e-06
GO:0016197 endosomal transport 3.07% (5/163) 4.89 1e-06 1.1e-05
GO:0017111 ribonucleoside triphosphate phosphatase activity 8.59% (14/163) 2.35 1e-06 1.1e-05
GO:0016462 pyrophosphatase activity 8.59% (14/163) 2.24 2e-06 2.7e-05
GO:0035615 clathrin adaptor activity 1.84% (3/163) 6.7 2e-06 3.1e-05
GO:0140312 cargo adaptor activity 1.84% (3/163) 6.7 2e-06 3.1e-05
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 8.59% (14/163) 2.21 2e-06 3.3e-05
GO:0016817 hydrolase activity, acting on acid anhydrides 8.59% (14/163) 2.2 3e-06 3.3e-05
GO:0009987 cellular process 39.88% (65/163) 0.75 3e-06 3.8e-05
GO:0008150 biological_process 53.99% (88/163) 0.54 8e-06 9.8e-05
GO:0005794 Golgi apparatus 1.84% (3/163) 6.05 1.1e-05 0.000132
GO:0030906 retromer, cargo-selective complex 1.23% (2/163) 7.92 1.7e-05 0.000196
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum 2.45% (4/163) 4.67 1.8e-05 0.000209
GO:0099023 vesicle tethering complex 3.07% (5/163) 3.87 2.5e-05 0.000278
GO:0030126 COPI vesicle coat 1.84% (3/163) 5.6 3e-05 0.000319
GO:0019899 enzyme binding 3.07% (5/163) 3.82 3e-05 0.000322
GO:0030674 protein-macromolecule adaptor activity 2.45% (4/163) 4.31 5.1e-05 0.000528
GO:0060090 molecular adaptor activity 2.45% (4/163) 4.28 5.6e-05 0.00056
GO:0005737 cytoplasm 4.29% (7/163) 2.83 6.5e-05 0.000642
GO:0006898 receptor-mediated endocytosis 1.23% (2/163) 6.92 0.000101 0.000921
GO:0000938 GARP complex 1.23% (2/163) 6.92 0.000101 0.000921
GO:0030122 AP-2 adaptor complex 1.23% (2/163) 6.92 0.000101 0.000921
GO:0072583 clathrin-dependent endocytosis 1.23% (2/163) 6.92 0.000101 0.000921
GO:0003924 GTPase activity 4.29% (7/163) 2.65 0.000142 0.00127
GO:0006913 nucleocytoplasmic transport 2.45% (4/163) 3.73 0.000244 0.002139
GO:0008250 oligosaccharyltransferase complex 1.23% (2/163) 6.34 0.000251 0.002164
GO:0051169 nuclear transport 2.45% (4/163) 3.69 0.00027 0.002289
GO:0009057 macromolecule catabolic process 4.29% (7/163) 2.43 0.000354 0.002943
GO:0032561 guanyl ribonucleotide binding 4.29% (7/163) 2.41 0.000382 0.003066
GO:0005525 GTP binding 4.29% (7/163) 2.41 0.000382 0.003066
GO:0019001 guanyl nucleotide binding 4.29% (7/163) 2.39 0.000411 0.003248
GO:1901565 organonitrogen compound catabolic process 3.68% (6/163) 2.64 0.000444 0.00345
GO:0006897 endocytosis 1.23% (2/163) 5.75 0.000598 0.004294
GO:0032012 regulation of ARF protein signal transduction 1.23% (2/163) 5.75 0.000598 0.004294
GO:0046578 regulation of Ras protein signal transduction 1.23% (2/163) 5.75 0.000598 0.004294
GO:0051056 regulation of small GTPase mediated signal transduction 1.23% (2/163) 5.75 0.000598 0.004294
GO:0098657 import into cell 1.23% (2/163) 5.75 0.000598 0.004294
GO:0006487 protein N-linked glycosylation 1.23% (2/163) 5.46 0.000908 0.006427
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 1.84% (3/163) 3.86 0.001173 0.008175
GO:0006887 exocytosis 1.84% (3/163) 3.81 0.001314 0.008901
GO:0016887 ATP hydrolysis activity 4.29% (7/163) 2.11 0.001312 0.009012
GO:0032940 secretion by cell 1.84% (3/163) 3.78 0.001389 0.009145
GO:0005085 guanyl-nucleotide exchange factor activity 1.84% (3/163) 3.78 0.001389 0.009145
GO:0030127 COPII vesicle coat 1.23% (2/163) 5.11 0.001491 0.009681
GO:0046903 secretion 1.84% (3/163) 3.6 0.001987 0.012727
GO:0051603 proteolysis involved in protein catabolic process 3.07% (5/163) 2.47 0.002178 0.013763
GO:0016050 vesicle organization 1.23% (2/163) 4.83 0.00221 0.013784
GO:0005515 protein binding 19.02% (31/163) 0.76 0.002438 0.015009
GO:0043413 macromolecule glycosylation 2.45% (4/163) 2.82 0.002565 0.015388
GO:0006486 protein glycosylation 2.45% (4/163) 2.82 0.002565 0.015388
GO:0004298 threonine-type endopeptidase activity 1.23% (2/163) 4.67 0.002764 0.016376
GO:0060589 nucleoside-triphosphatase regulator activity 2.45% (4/163) 2.78 0.002845 0.016444
GO:0030695 GTPase regulator activity 2.45% (4/163) 2.78 0.002845 0.016444
GO:0070085 glycosylation 2.45% (4/163) 2.76 0.002992 0.01709
GO:1902531 regulation of intracellular signal transduction 1.23% (2/163) 4.6 0.003063 0.017282
GO:0032555 purine ribonucleotide binding 14.72% (24/163) 0.86 0.003132 0.017466
GO:0070003 threonine-type peptidase activity 1.23% (2/163) 4.53 0.003376 0.018184
GO:0034504 protein localization to nucleus 1.23% (2/163) 4.53 0.003376 0.018184
GO:0006606 protein import into nucleus 1.23% (2/163) 4.53 0.003376 0.018184
GO:0032553 ribonucleotide binding 14.72% (24/163) 0.85 0.00354 0.018852
GO:0051170 import into nucleus 1.23% (2/163) 4.46 0.003703 0.019505
GO:0035639 purine ribonucleoside triphosphate binding 14.11% (23/163) 0.86 0.003789 0.019734
GO:0097367 carbohydrate derivative binding 14.72% (24/163) 0.84 0.003915 0.020173
GO:0016251 RNA polymerase II general transcription initiation factor activity 0.61% (1/163) 7.92 0.004127 0.020376
GO:1990071 TRAPPII protein complex 0.61% (1/163) 7.92 0.004127 0.020376
GO:0106073 dolichyl pyrophosphate Glc2Man9GlcNAc2 alpha-1,2-glucosyltransferase activity 0.61% (1/163) 7.92 0.004127 0.020376
GO:0051751 alpha-1,4-mannosyltransferase activity 0.61% (1/163) 7.92 0.004127 0.020376
GO:1902494 catalytic complex 4.29% (7/163) 1.74 0.005339 0.026091
GO:0019538 protein metabolic process 15.95% (26/163) 0.76 0.005591 0.02704
GO:0017076 purine nucleotide binding 14.72% (24/163) 0.79 0.006137 0.029383
GO:0097435 supramolecular fiber organization 1.84% (3/163) 3.01 0.006234 0.029548
GO:0022607 cellular component assembly 3.07% (5/163) 2.09 0.006656 0.031239
GO:0005488 binding 41.1% (67/163) 0.38 0.006734 0.031293
GO:1905368 peptidase complex 1.23% (2/163) 3.97 0.007276 0.032846
GO:0006506 GPI anchor biosynthetic process 1.23% (2/163) 3.97 0.007276 0.032846
GO:0006505 GPI anchor metabolic process 1.23% (2/163) 3.97 0.007276 0.032846
GO:0036507 protein demannosylation 0.61% (1/163) 6.92 0.008237 0.033086
GO:0060548 obsolete negative regulation of cell death 0.61% (1/163) 6.92 0.008237 0.033086
GO:0036265 RNA (guanine-N7)-methylation 0.61% (1/163) 6.92 0.008237 0.033086
GO:0006517 protein deglycosylation 0.61% (1/163) 6.92 0.008237 0.033086
GO:1904380 endoplasmic reticulum mannose trimming 0.61% (1/163) 6.92 0.008237 0.033086
GO:0036508 protein alpha-1,2-demannosylation 0.61% (1/163) 6.92 0.008237 0.033086
GO:1904382 mannose trimming involved in glycoprotein ERAD pathway 0.61% (1/163) 6.92 0.008237 0.033086
GO:0030124 AP-4 adaptor complex 0.61% (1/163) 6.92 0.008237 0.033086
GO:0009100 glycoprotein metabolic process 0.61% (1/163) 6.92 0.008237 0.033086
GO:0035977 protein deglycosylation involved in glycoprotein catabolic process 0.61% (1/163) 6.92 0.008237 0.033086
GO:0003674 molecular_function 61.96% (101/163) 0.25 0.007459 0.033355
GO:0098797 plasma membrane protein complex 1.23% (2/163) 3.92 0.00774 0.034289
GO:0140535 intracellular protein-containing complex 3.07% (5/163) 2.02 0.008214 0.03605
GO:0006497 protein lipidation 1.23% (2/163) 3.79 0.00921 0.036687
GO:0140352 export from cell 1.84% (3/163) 2.78 0.009759 0.038229
GO:0140534 endoplasmic reticulum protein-containing complex 1.23% (2/163) 3.75 0.009726 0.038418
GO:0016780 phosphotransferase activity, for other substituted phosphate groups 1.23% (2/163) 3.71 0.010254 0.039516
GO:0009056 catabolic process 4.91% (8/163) 1.43 0.010215 0.039686
GO:0009247 glycolipid biosynthetic process 1.23% (2/163) 3.67 0.010795 0.041264
GO:0000166 nucleotide binding 14.72% (24/163) 0.71 0.011235 0.042264
GO:1901265 nucleoside phosphate binding 14.72% (24/163) 0.71 0.011235 0.042264
GO:0008654 phospholipid biosynthetic process 1.84% (3/163) 2.7 0.011325 0.042268
GO:1903509 liposaccharide metabolic process 1.23% (2/163) 3.56 0.01249 0.043532
GO:0006664 glycolipid metabolic process 1.23% (2/163) 3.56 0.01249 0.043532
GO:0043168 anion binding 14.72% (24/163) 0.7 0.012363 0.043732
GO:0051377 mannose-ethanolamine phosphotransferase activity 0.61% (1/163) 6.34 0.01233 0.043942
GO:0035494 SNARE complex disassembly 0.61% (1/163) 6.34 0.01233 0.043942
GO:0005968 Rab-protein geranylgeranyltransferase complex 0.61% (1/163) 6.34 0.01233 0.043942
GO:0030123 AP-3 adaptor complex 0.61% (1/163) 6.34 0.01233 0.043942
GO:0006611 protein export from nucleus 0.61% (1/163) 6.34 0.01233 0.043942
GO:0140223 general transcription initiation factor activity 0.61% (1/163) 6.34 0.01233 0.043942
GO:0007010 cytoskeleton organization 1.84% (3/163) 2.59 0.013931 0.048199
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (163) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms