Coexpression cluster: Cluster_6 (Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003735 structural constituent of ribosome 30.77% (20/65) 4.39 0.0 0.0
GO:1990904 ribonucleoprotein complex 24.62% (16/65) 5.31 0.0 0.0
GO:0005198 structural molecule activity 30.77% (20/65) 4.14 0.0 0.0
GO:0005840 ribosome 27.69% (18/65) 4.35 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 27.69% (18/65) 4.03 0.0 0.0
GO:0043228 non-membrane-bounded organelle 27.69% (18/65) 4.03 0.0 0.0
GO:0022625 cytosolic large ribosomal subunit 10.77% (7/65) 7.25 0.0 0.0
GO:0009059 macromolecule biosynthetic process 27.69% (18/65) 3.42 0.0 0.0
GO:0044249 cellular biosynthetic process 32.31% (21/65) 2.79 0.0 0.0
GO:0009058 biosynthetic process 33.85% (22/65) 2.65 0.0 0.0
GO:0043229 intracellular organelle 29.23% (19/65) 2.98 0.0 0.0
GO:0043226 organelle 29.23% (19/65) 2.98 0.0 0.0
GO:1901576 organic substance biosynthetic process 32.31% (21/65) 2.67 0.0 0.0
GO:0002182 cytoplasmic translational elongation 7.69% (5/65) 8.11 0.0 0.0
GO:0006412 translation 20.0% (13/65) 3.81 0.0 0.0
GO:0043043 peptide biosynthetic process 20.0% (13/65) 3.77 0.0 0.0
GO:0005575 cellular_component 46.15% (30/65) 1.92 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 24.62% (16/65) 3.16 0.0 0.0
GO:0044391 ribosomal subunit 12.31% (8/65) 5.39 0.0 0.0
GO:0006518 peptide metabolic process 20.0% (13/65) 3.69 0.0 0.0
GO:0043604 amide biosynthetic process 20.0% (13/65) 3.67 0.0 0.0
GO:0015934 large ribosomal subunit 10.77% (7/65) 5.85 0.0 0.0
GO:0043603 amide metabolic process 20.0% (13/65) 3.55 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 35.38% (23/65) 2.28 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 24.62% (16/65) 3.0 0.0 0.0
GO:0032991 protein-containing complex 27.69% (18/65) 2.7 0.0 0.0
GO:0006414 translational elongation 7.69% (5/65) 5.93 0.0 0.0
GO:0044237 cellular metabolic process 43.08% (28/65) 1.51 0.0 1e-06
GO:0110165 cellular anatomical entity 30.77% (20/65) 1.82 0.0 3e-06
GO:0009987 cellular process 52.31% (34/65) 1.14 1e-06 4e-06
GO:0003723 RNA binding 16.92% (11/65) 2.71 1e-06 6e-06
GO:0043170 macromolecule metabolic process 38.46% (25/65) 1.44 1e-06 8e-06
GO:0030688 preribosome, small subunit precursor 3.08% (2/65) 8.66 8e-06 5.6e-05
GO:0042254 ribosome biogenesis 4.62% (3/65) 5.83 2e-05 0.000139
GO:0006364 rRNA processing 6.15% (4/65) 4.56 2.6e-05 0.000172
GO:0071704 organic substance metabolic process 43.08% (28/65) 1.08 2.8e-05 0.000181
GO:0016072 rRNA metabolic process 6.15% (4/65) 4.48 3.3e-05 0.000198
GO:0008152 metabolic process 44.62% (29/65) 1.04 3.2e-05 0.000202
GO:0015986 proton motive force-driven ATP synthesis 4.62% (3/65) 5.51 4e-05 0.000232
GO:0006754 ATP biosynthetic process 4.62% (3/65) 5.51 4e-05 0.000232
GO:0022613 ribonucleoprotein complex biogenesis 4.62% (3/65) 5.31 6.1e-05 0.000346
GO:0009145 purine nucleoside triphosphate biosynthetic process 4.62% (3/65) 5.25 7e-05 0.000375
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 4.62% (3/65) 5.25 7e-05 0.000375
GO:0006807 nitrogen compound metabolic process 35.38% (23/65) 1.15 0.000107 0.000539
GO:0009201 ribonucleoside triphosphate biosynthetic process 4.62% (3/65) 5.05 0.000105 0.000539
GO:0009142 nucleoside triphosphate biosynthetic process 4.62% (3/65) 5.05 0.000105 0.000539
GO:0006396 RNA processing 9.23% (6/65) 2.95 0.000128 0.000631
GO:0051879 Hsp90 protein binding 3.08% (2/65) 6.66 0.000174 0.000838
GO:0034470 ncRNA processing 6.15% (4/65) 3.75 0.000232 0.001095
GO:0009152 purine ribonucleotide biosynthetic process 4.62% (3/65) 4.31 0.000481 0.002223
GO:0003676 nucleic acid binding 23.08% (15/65) 1.35 0.000581 0.002631
GO:0009260 ribonucleotide biosynthetic process 4.62% (3/65) 4.16 0.00065 0.002834
GO:0046390 ribose phosphate biosynthetic process 4.62% (3/65) 4.16 0.00065 0.002834
GO:0003674 molecular_function 72.31% (47/65) 0.47 0.000739 0.003163
GO:0044085 cellular component biogenesis 4.62% (3/65) 4.06 0.000788 0.003311
GO:0006164 purine nucleotide biosynthetic process 4.62% (3/65) 3.99 0.000921 0.003732
GO:0030684 preribosome 3.08% (2/65) 5.49 0.000911 0.00376
GO:0034660 ncRNA metabolic process 6.15% (4/65) 3.13 0.001145 0.004561
GO:0015252 proton channel activity 3.08% (2/65) 5.29 0.001202 0.004629
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism 3.08% (2/65) 5.29 0.001202 0.004629
GO:0072522 purine-containing compound biosynthetic process 4.62% (3/65) 3.83 0.001254 0.004748
GO:0044238 primary metabolic process 35.38% (23/65) 0.9 0.001394 0.005111
GO:0016070 RNA metabolic process 10.77% (7/65) 2.07 0.001374 0.005118
GO:0046034 ATP metabolic process 4.62% (3/65) 3.69 0.001654 0.005704
GO:0016435 rRNA (guanine) methyltransferase activity 1.54% (1/65) 9.25 0.001646 0.00576
GO:0070476 rRNA (guanine-N7)-methylation 1.54% (1/65) 9.25 0.001646 0.00576
GO:0015078 proton transmembrane transporter activity 4.62% (3/65) 3.7 0.001621 0.005851
GO:0009205 purine ribonucleoside triphosphate metabolic process 4.62% (3/65) 3.61 0.001936 0.006483
GO:0009144 purine nucleoside triphosphate metabolic process 4.62% (3/65) 3.61 0.001936 0.006483
GO:1901293 nucleoside phosphate biosynthetic process 4.62% (3/65) 3.56 0.002166 0.007048
GO:0009165 nucleotide biosynthetic process 4.62% (3/65) 3.56 0.002166 0.007048
GO:0009199 ribonucleoside triphosphate metabolic process 4.62% (3/65) 3.55 0.002206 0.007078
GO:0006139 nucleobase-containing compound metabolic process 15.38% (10/65) 1.51 0.002496 0.007897
GO:0009141 nucleoside triphosphate metabolic process 4.62% (3/65) 3.44 0.002721 0.008494
GO:0051731 polynucleotide 5'-hydroxyl-kinase activity 1.54% (1/65) 8.25 0.003289 0.009739
GO:0036265 RNA (guanine-N7)-methylation 1.54% (1/65) 8.25 0.003289 0.009739
GO:0031072 heat shock protein binding 3.08% (2/65) 4.57 0.003228 0.00981
GO:1901137 carbohydrate derivative biosynthetic process 4.62% (3/65) 3.33 0.003356 0.009813
GO:1901564 organonitrogen compound metabolic process 24.62% (16/65) 1.05 0.0032 0.009855
GO:0008150 biological_process 53.85% (35/65) 0.54 0.004311 0.012447
GO:0046483 heterocycle metabolic process 15.38% (10/65) 1.38 0.004536 0.012937
GO:0006725 cellular aromatic compound metabolic process 15.38% (10/65) 1.37 0.004888 0.013771
GO:0005096 GTPase activator activity 3.08% (2/65) 4.22 0.005188 0.014439
GO:1901360 organic cyclic compound metabolic process 15.38% (10/65) 1.34 0.005576 0.015334
GO:0009150 purine ribonucleotide metabolic process 4.62% (3/65) 3.01 0.00622 0.016904
GO:0019538 protein metabolic process 20.0% (13/65) 1.08 0.007063 0.018753
GO:0009259 ribonucleotide metabolic process 4.62% (3/65) 2.95 0.007005 0.018816
GO:0019693 ribose phosphate metabolic process 4.62% (3/65) 2.93 0.007252 0.019035
GO:0005261 monoatomic cation channel activity 3.08% (2/65) 3.96 0.007388 0.019176
GO:0008047 enzyme activator activity 3.08% (2/65) 3.84 0.008719 0.022378
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) 1.54% (1/65) 6.66 0.009834 0.024963
GO:0006163 purine nucleotide metabolic process 4.62% (3/65) 2.74 0.010304 0.025871
GO:0030942 endoplasmic reticulum signal peptide binding 1.54% (1/65) 6.44 0.011464 0.028171
GO:0005786 signal recognition particle, endoplasmic reticulum targeting 1.54% (1/65) 6.44 0.011464 0.028171
GO:0072521 purine-containing compound metabolic process 4.62% (3/65) 2.67 0.011792 0.028672
GO:0140677 molecular function activator activity 3.08% (2/65) 3.57 0.012357 0.029733
GO:0090407 organophosphate biosynthetic process 4.62% (3/65) 2.63 0.012695 0.030232
GO:0009117 nucleotide metabolic process 4.62% (3/65) 2.54 0.014995 0.035345
GO:0022890 inorganic cation transmembrane transporter activity 4.62% (3/65) 2.52 0.015507 0.036184
GO:0006753 nucleoside phosphate metabolic process 4.62% (3/65) 2.49 0.016428 0.036843
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) 1.54% (1/65) 5.93 0.016337 0.036999
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.54% (1/65) 5.93 0.016337 0.036999
GO:0070475 rRNA base methylation 1.54% (1/65) 5.93 0.016337 0.036999
GO:0008270 zinc ion binding 6.15% (4/65) 1.99 0.018466 0.041015
GO:0031167 rRNA methylation 1.54% (1/65) 5.66 0.019573 0.042654
GO:0000470 maturation of LSU-rRNA 1.54% (1/65) 5.66 0.019573 0.042654
GO:0000387 spliceosomal snRNP assembly 1.54% (1/65) 5.55 0.021187 0.04574
GO:0008324 monoatomic cation transmembrane transporter activity 4.62% (3/65) 2.34 0.021639 0.046282
GO:0008649 rRNA methyltransferase activity 1.54% (1/65) 5.44 0.022798 0.047445
GO:0030695 GTPase regulator activity 3.08% (2/65) 3.11 0.022728 0.047728
GO:0060589 nucleoside-triphosphatase regulator activity 3.08% (2/65) 3.11 0.022728 0.047728
GO:0090304 nucleic acid metabolic process 10.77% (7/65) 1.3 0.023235 0.047923
GO:0055086 nucleobase-containing small molecule metabolic process 4.62% (3/65) 2.28 0.024047 0.049158
GO:0000154 rRNA modification 1.54% (1/65) 5.34 0.024407 0.049456
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (65) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms