Coexpression cluster: Cluster_234 (Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0010207 photosystem II assembly 3.39% (2/59) 7.58 4.6e-05 0.012653
GO:0062197 cellular response to chemical stress 3.39% (2/59) 5.99 0.000452 0.017833
GO:0034599 cellular response to oxidative stress 3.39% (2/59) 5.99 0.000452 0.017833
GO:1901661 quinone metabolic process 3.39% (2/59) 6.39 0.00026 0.017919
GO:0042181 ketone biosynthetic process 3.39% (2/59) 6.39 0.00026 0.017919
GO:1901663 quinone biosynthetic process 3.39% (2/59) 6.39 0.00026 0.017919
GO:0070887 cellular response to chemical stimulus 3.39% (2/59) 5.86 0.000544 0.018763
GO:0043933 protein-containing complex organization 6.78% (4/59) 3.01 0.001551 0.020379
GO:0046408 chlorophyll synthetase activity 1.69% (1/59) 9.39 0.001494 0.020614
GO:0008935 1,4-dihydroxy-2-naphthoyl-CoA synthase activity 1.69% (1/59) 9.39 0.001494 0.020614
GO:0010190 cytochrome b6f complex assembly 1.69% (1/59) 9.39 0.001494 0.020614
GO:0030956 glutamyl-tRNA(Gln) amidotransferase complex 1.69% (1/59) 9.39 0.001494 0.020614
GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity 1.69% (1/59) 9.39 0.001494 0.020614
GO:0008909 isochorismate synthase activity 1.69% (1/59) 9.39 0.001494 0.020614
GO:0002943 tRNA dihydrouridine synthesis 1.69% (1/59) 9.39 0.001494 0.020614
GO:0050486 intramolecular hydroxytransferase activity 1.69% (1/59) 9.39 0.001494 0.020614
GO:0042180 cellular ketone metabolic process 3.39% (2/59) 5.69 0.000697 0.021363
GO:0006399 tRNA metabolic process 5.08% (3/59) 3.61 0.00196 0.022541
GO:0004659 prenyltransferase activity 3.39% (2/59) 6.06 0.00041 0.022611
GO:0042440 pigment metabolic process 3.39% (2/59) 4.99 0.001817 0.0228
GO:0033014 tetrapyrrole biosynthetic process 3.39% (2/59) 4.96 0.001904 0.022851
GO:0140101 catalytic activity, acting on a tRNA 5.08% (3/59) 3.98 0.000925 0.023216
GO:0042362 fat-soluble vitamin biosynthetic process 1.69% (1/59) 8.39 0.002985 0.023541
GO:0042371 vitamin K biosynthetic process 1.69% (1/59) 8.39 0.002985 0.023541
GO:0042372 phylloquinone biosynthetic process 1.69% (1/59) 8.39 0.002985 0.023541
GO:0051053 negative regulation of DNA metabolic process 1.69% (1/59) 8.39 0.002985 0.023541
GO:0042373 vitamin K metabolic process 1.69% (1/59) 8.39 0.002985 0.023541
GO:0006775 fat-soluble vitamin metabolic process 1.69% (1/59) 8.39 0.002985 0.023541
GO:0042374 phylloquinone metabolic process 1.69% (1/59) 8.39 0.002985 0.023541
GO:0045910 negative regulation of DNA recombination 1.69% (1/59) 8.39 0.002985 0.023541
GO:0000018 regulation of DNA recombination 1.69% (1/59) 8.39 0.002985 0.023541
GO:0046148 pigment biosynthetic process 3.39% (2/59) 5.53 0.000868 0.02395
GO:0033013 tetrapyrrole metabolic process 3.39% (2/59) 4.58 0.003207 0.02459
GO:0006778 porphyrin-containing compound metabolic process 3.39% (2/59) 4.83 0.002271 0.025071
GO:0140098 catalytic activity, acting on RNA 6.78% (4/59) 2.66 0.00371 0.026948
GO:0006400 tRNA modification 3.39% (2/59) 4.74 0.002566 0.027239
GO:0065003 protein-containing complex assembly 5.08% (3/59) 3.29 0.003667 0.02735
GO:0006779 porphyrin-containing compound biosynthetic process 3.39% (2/59) 5.3 0.001193 0.027446
GO:0004325 ferrochelatase activity 1.69% (1/59) 7.8 0.004475 0.030122
GO:0009233 menaquinone metabolic process 1.69% (1/59) 7.8 0.004475 0.030122
GO:0009234 menaquinone biosynthetic process 1.69% (1/59) 7.8 0.004475 0.030122
GO:0015979 photosynthesis 3.39% (2/59) 4.3 0.00469 0.030822
GO:0008033 tRNA processing 3.39% (2/59) 4.18 0.005529 0.034684
GO:0004519 endonuclease activity 3.39% (2/59) 4.18 0.005529 0.034684
GO:0017150 tRNA dihydrouridine synthase activity 1.69% (1/59) 7.39 0.005962 0.03501
GO:0106413 RNA dihydrouridine synthase activity 1.69% (1/59) 7.39 0.005962 0.03501
GO:0043953 protein transport by the Tat complex 1.69% (1/59) 7.39 0.005962 0.03501
GO:0004725 protein tyrosine phosphatase activity 1.69% (1/59) 7.06 0.007447 0.042819
GO:0070525 tRNA threonylcarbamoyladenosine metabolic process 1.69% (1/59) 6.8 0.00893 0.04564
GO:0002949 tRNA threonylcarbamoyladenosine modification 1.69% (1/59) 6.8 0.00893 0.04564
GO:0004820 glycine-tRNA ligase activity 1.69% (1/59) 6.8 0.00893 0.04564
GO:0006426 glycyl-tRNA aminoacylation 1.69% (1/59) 6.8 0.00893 0.04564
GO:0034660 ncRNA metabolic process 5.08% (3/59) 2.86 0.008305 0.046779
GO:0022607 cellular component assembly 5.08% (3/59) 2.82 0.008888 0.049059
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (59) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms