Coexpression cluster: Cluster_7 (Zea mays HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003674 molecular_function 72.83% (134/184) 0.48 0.0 6e-06
GO:0005488 binding 50.0% (92/184) 0.66 0.0 5.9e-05
GO:0006139 nucleobase-containing compound metabolic process 15.22% (28/184) 1.49 1e-06 0.000182
GO:0016874 ligase activity 4.89% (9/184) 3.0 2e-06 0.0004
GO:0044281 small molecule metabolic process 9.78% (18/184) 1.76 7e-06 0.000507
GO:0035639 purine ribonucleoside triphosphate binding 17.93% (33/184) 1.21 5e-06 0.000509
GO:0034660 ncRNA metabolic process 4.89% (9/184) 2.8 7e-06 0.000532
GO:0046483 heterocycle metabolic process 15.22% (28/184) 1.37 4e-06 0.00055
GO:0006725 cellular aromatic compound metabolic process 15.22% (28/184) 1.35 5e-06 0.00056
GO:1901360 organic cyclic compound metabolic process 15.22% (28/184) 1.33 7e-06 0.000599
GO:0032555 purine ribonucleotide binding 17.93% (33/184) 1.15 1.2e-05 0.0008
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 2.72% (5/184) 3.84 2.8e-05 0.000813
GO:0006082 organic acid metabolic process 7.07% (13/184) 2.0 2.6e-05 0.000814
GO:0043436 oxoacid metabolic process 7.07% (13/184) 2.0 2.6e-05 0.000838
GO:0000038 very long-chain fatty acid metabolic process 1.09% (2/184) 7.75 2.2e-05 0.00085
GO:0042761 very long-chain fatty acid biosynthetic process 1.09% (2/184) 7.75 2.2e-05 0.00085
GO:0019001 guanyl nucleotide binding 4.89% (9/184) 2.58 2.3e-05 0.000853
GO:0034641 cellular nitrogen compound metabolic process 16.3% (30/184) 1.17 2.6e-05 0.000876
GO:0016859 cis-trans isomerase activity 2.72% (5/184) 3.8 3.1e-05 0.000887
GO:0032553 ribonucleotide binding 17.93% (33/184) 1.13 1.5e-05 0.000893
GO:0097159 organic cyclic compound binding 32.07% (59/184) 0.75 1.6e-05 0.000895
GO:0097367 carbohydrate derivative binding 17.93% (33/184) 1.12 1.8e-05 0.000901
GO:0019752 carboxylic acid metabolic process 7.07% (13/184) 2.01 2.6e-05 0.000908
GO:0032561 guanyl ribonucleotide binding 4.89% (9/184) 2.6 2.1e-05 0.000919
GO:0005525 GTP binding 4.89% (9/184) 2.6 2.1e-05 0.000919
GO:0017076 purine nucleotide binding 17.93% (33/184) 1.07 3.7e-05 0.001007
GO:0000166 nucleotide binding 18.48% (34/184) 1.04 4.3e-05 0.001041
GO:1901265 nucleoside phosphate binding 18.48% (34/184) 1.04 4.3e-05 0.001041
GO:0044237 cellular metabolic process 26.63% (49/184) 0.81 4e-05 0.001055
GO:0043168 anion binding 18.48% (34/184) 1.03 5e-05 0.00119
GO:0090304 nucleic acid metabolic process 11.41% (21/184) 1.38 6.1e-05 0.001404
GO:0009987 cellular process 36.41% (67/184) 0.62 7e-05 0.001547
GO:0006807 nitrogen compound metabolic process 27.17% (50/184) 0.76 7.8e-05 0.001676
GO:0000049 tRNA binding 1.63% (3/184) 5.08 9.1e-05 0.001848
GO:0016070 RNA metabolic process 8.15% (15/184) 1.67 8.9e-05 0.00186
GO:0016853 isomerase activity 4.35% (8/184) 2.5 9.5e-05 0.001875
GO:1901363 heterocyclic compound binding 18.48% (34/184) 0.98 0.0001 0.001913
GO:0036094 small molecule binding 18.48% (34/184) 0.96 0.000119 0.002222
GO:0006399 tRNA metabolic process 3.26% (6/184) 2.96 0.00013 0.002372
GO:0003676 nucleic acid binding 17.39% (32/184) 0.94 0.000259 0.004594
GO:0003924 GTPase activity 3.8% (7/184) 2.47 0.000298 0.005154
GO:0140101 catalytic activity, acting on a tRNA 2.72% (5/184) 3.08 0.000334 0.005502
GO:0003723 RNA binding 7.61% (14/184) 1.56 0.000332 0.005596
GO:0007094 mitotic spindle assembly checkpoint signaling 1.09% (2/184) 5.75 0.000593 0.007253
GO:0033046 negative regulation of sister chromatid segregation 1.09% (2/184) 5.75 0.000593 0.007253
GO:0031577 spindle checkpoint signaling 1.09% (2/184) 5.75 0.000593 0.007253
GO:1905819 negative regulation of chromosome separation 1.09% (2/184) 5.75 0.000593 0.007253
GO:0071173 spindle assembly checkpoint signaling 1.09% (2/184) 5.75 0.000593 0.007253
GO:0071174 mitotic spindle checkpoint signaling 1.09% (2/184) 5.75 0.000593 0.007253
GO:0051985 negative regulation of chromosome segregation 1.09% (2/184) 5.75 0.000593 0.007253
GO:0051784 negative regulation of nuclear division 1.09% (2/184) 5.75 0.000593 0.007253
GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle 1.09% (2/184) 5.75 0.000593 0.007253
GO:0045841 negative regulation of mitotic metaphase/anaphase transition 1.09% (2/184) 5.75 0.000593 0.007253
GO:0045839 negative regulation of mitotic nuclear division 1.09% (2/184) 5.75 0.000593 0.007253
GO:0033048 negative regulation of mitotic sister chromatid segregation 1.09% (2/184) 5.75 0.000593 0.007253
GO:2000816 negative regulation of mitotic sister chromatid separation 1.09% (2/184) 5.75 0.000593 0.007253
GO:0006520 amino acid metabolic process 4.35% (8/184) 2.16 0.000478 0.007705
GO:0005515 protein binding 19.57% (36/184) 0.8 0.000678 0.008153
GO:0003824 catalytic activity 38.59% (71/184) 0.5 0.000568 0.008948
GO:2001251 negative regulation of chromosome organization 1.09% (2/184) 5.58 0.00076 0.008986
GO:0007088 regulation of mitotic nuclear division 1.09% (2/184) 5.42 0.000948 0.009464
GO:0033047 regulation of mitotic sister chromatid segregation 1.09% (2/184) 5.42 0.000948 0.009464
GO:0010965 regulation of mitotic sister chromatid separation 1.09% (2/184) 5.42 0.000948 0.009464
GO:1905818 regulation of chromosome separation 1.09% (2/184) 5.42 0.000948 0.009464
GO:1901991 negative regulation of mitotic cell cycle phase transition 1.09% (2/184) 5.42 0.000948 0.009464
GO:0006418 tRNA aminoacylation for protein translation 2.17% (4/184) 3.27 0.000817 0.0095
GO:0004812 aminoacyl-tRNA ligase activity 2.17% (4/184) 3.24 0.000888 0.009542
GO:0043038 amino acid activation 2.17% (4/184) 3.24 0.000888 0.009542
GO:0043039 tRNA aminoacylation 2.17% (4/184) 3.24 0.000888 0.009542
GO:0016875 ligase activity, forming carbon-oxygen bonds 2.17% (4/184) 3.24 0.000888 0.009542
GO:0044238 primary metabolic process 28.8% (53/184) 0.6 0.000836 0.00956
GO:0046451 diaminopimelate metabolic process 1.09% (2/184) 5.29 0.001155 0.010633
GO:0006553 lysine metabolic process 1.09% (2/184) 5.29 0.001155 0.010633
GO:0009089 lysine biosynthetic process via diaminopimelate 1.09% (2/184) 5.29 0.001155 0.010633
GO:0045930 negative regulation of mitotic cell cycle 1.09% (2/184) 5.29 0.001155 0.010633
GO:0009085 lysine biosynthetic process 1.09% (2/184) 5.29 0.001155 0.010633
GO:0007093 mitotic cell cycle checkpoint signaling 1.09% (2/184) 5.29 0.001155 0.010633
GO:0017111 ribonucleoside triphosphate phosphatase activity 5.43% (10/184) 1.69 0.001196 0.010875
GO:0043648 dicarboxylic acid metabolic process 1.63% (3/184) 3.84 0.001222 0.010968
GO:0051129 negative regulation of cellular component organization 1.09% (2/184) 5.16 0.001381 0.012092
GO:0010639 negative regulation of organelle organization 1.09% (2/184) 5.16 0.001381 0.012092
GO:0009451 RNA modification 2.72% (5/184) 2.58 0.001565 0.01353
GO:0034470 ncRNA processing 2.72% (5/184) 2.57 0.001643 0.014035
GO:0051783 regulation of nuclear division 1.09% (2/184) 4.94 0.001893 0.015607
GO:0005829 cytosol 1.09% (2/184) 4.94 0.001893 0.015607
GO:0030154 cell differentiation 1.09% (2/184) 4.94 0.001893 0.015607
GO:0055086 nucleobase-containing small molecule metabolic process 3.8% (7/184) 2.0 0.001979 0.016128
GO:0005524 ATP binding 13.04% (24/184) 0.91 0.002189 0.016508
GO:0008152 metabolic process 30.98% (57/184) 0.51 0.002188 0.016681
GO:0000075 cell cycle checkpoint signaling 1.09% (2/184) 4.84 0.002178 0.016782
GO:1901988 negative regulation of cell cycle phase transition 1.09% (2/184) 4.84 0.002178 0.016782
GO:0010948 negative regulation of cell cycle process 1.09% (2/184) 4.84 0.002178 0.016782
GO:0016462 pyrophosphatase activity 5.43% (10/184) 1.58 0.002098 0.016907
GO:0043167 ion binding 21.74% (40/184) 0.66 0.002138 0.017034
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 5.43% (10/184) 1.55 0.002388 0.01782
GO:0016817 hydrolase activity, acting on acid anhydrides 5.43% (10/184) 1.54 0.002556 0.018879
GO:0046394 carboxylic acid biosynthetic process 3.26% (6/184) 2.11 0.002842 0.019564
GO:0016053 organic acid biosynthetic process 3.26% (6/184) 2.11 0.002842 0.019564
GO:0003684 damaged DNA binding 1.09% (2/184) 4.66 0.002803 0.019679
GO:0033045 regulation of sister chromatid segregation 1.09% (2/184) 4.66 0.002803 0.019679
GO:0030071 regulation of mitotic metaphase/anaphase transition 1.09% (2/184) 4.66 0.002803 0.019679
GO:1902099 regulation of metaphase/anaphase transition of cell cycle 1.09% (2/184) 4.66 0.002803 0.019679
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor 1.09% (2/184) 4.66 0.002803 0.019679
GO:0033044 regulation of chromosome organization 1.09% (2/184) 4.58 0.003144 0.021434
GO:0043170 macromolecule metabolic process 21.74% (40/184) 0.62 0.003315 0.022384
GO:0008641 ubiquitin-like modifier activating enzyme activity 1.09% (2/184) 4.5 0.003503 0.023213
GO:0051983 regulation of chromosome segregation 1.09% (2/184) 4.5 0.003503 0.023213
GO:1901990 regulation of mitotic cell cycle phase transition 1.09% (2/184) 4.42 0.003881 0.025242
GO:0140098 catalytic activity, acting on RNA 3.8% (7/184) 1.83 0.003847 0.025254
GO:0032559 adenyl ribonucleotide binding 13.04% (24/184) 0.84 0.00405 0.025867
GO:0071704 organic substance metabolic process 28.8% (53/184) 0.5 0.004016 0.025885
GO:0007346 regulation of mitotic cell cycle 1.09% (2/184) 4.35 0.004276 0.027069
GO:0016925 protein sumoylation 0.54% (1/184) 7.75 0.004658 0.02823
GO:0019948 SUMO activating enzyme activity 0.54% (1/184) 7.75 0.004658 0.02823
GO:0001731 formation of translation preinitiation complex 0.54% (1/184) 7.75 0.004658 0.02823
GO:0033971 hydroxyisourate hydrolase activity 0.54% (1/184) 7.75 0.004658 0.02823
GO:0034457 Mpp10 complex 0.54% (1/184) 7.75 0.004658 0.02823
GO:0045786 negative regulation of cell cycle 1.09% (2/184) 4.22 0.00512 0.030506
GO:0009259 ribonucleotide metabolic process 2.72% (5/184) 2.19 0.005115 0.030735
GO:0019693 ribose phosphate metabolic process 2.72% (5/184) 2.17 0.005391 0.031855
GO:0016879 ligase activity, forming carbon-nitrogen bonds 1.63% (3/184) 3.05 0.005857 0.034316
GO:1901987 regulation of cell cycle phase transition 1.09% (2/184) 4.1 0.006035 0.035069
GO:0004674 protein serine/threonine kinase activity 2.17% (4/184) 2.45 0.006387 0.036816
GO:0009112 nucleobase metabolic process 1.09% (2/184) 4.05 0.006517 0.037265
GO:0009982 pseudouridine synthase activity 1.09% (2/184) 3.99 0.007017 0.039803
GO:0016877 ligase activity, forming carbon-sulfur bonds 1.09% (2/184) 3.94 0.007534 0.042395
GO:0035065 regulation of histone acetylation 0.54% (1/184) 6.75 0.009295 0.043358
GO:0003876 AMP deaminase activity 0.54% (1/184) 6.75 0.009295 0.043358
GO:0031499 TRAMP complex 0.54% (1/184) 6.75 0.009295 0.043358
GO:0070985 transcription factor TFIIK complex 0.54% (1/184) 6.75 0.009295 0.043358
GO:0032264 IMP salvage 0.54% (1/184) 6.75 0.009295 0.043358
GO:0008840 4-hydroxy-tetrahydrodipicolinate synthase activity 0.54% (1/184) 6.75 0.009295 0.043358
GO:0032261 purine nucleotide salvage 0.54% (1/184) 6.75 0.009295 0.043358
GO:0004819 glutamine-tRNA ligase activity 0.54% (1/184) 6.75 0.009295 0.043358
GO:0006425 glutaminyl-tRNA aminoacylation 0.54% (1/184) 6.75 0.009295 0.043358
GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity 0.54% (1/184) 6.75 0.009295 0.043358
GO:0008568 microtubule severing ATPase activity 0.54% (1/184) 6.75 0.009295 0.043358
GO:0031056 regulation of histone modification 0.54% (1/184) 6.75 0.009295 0.043358
GO:0140776 protein-containing complex destabilizing activity 0.54% (1/184) 6.75 0.009295 0.043358
GO:0047623 adenosine-phosphate deaminase activity 0.54% (1/184) 6.75 0.009295 0.043358
GO:2000756 regulation of peptidyl-lysine acetylation 0.54% (1/184) 6.75 0.009295 0.043358
GO:1901983 regulation of protein acetylation 0.54% (1/184) 6.75 0.009295 0.043358
GO:0106380 purine ribonucleotide salvage 0.54% (1/184) 6.75 0.009295 0.043358
GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway 0.54% (1/184) 6.75 0.009295 0.043358
GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity 0.54% (1/184) 6.75 0.009295 0.043358
GO:0031119 tRNA pseudouridine synthesis 0.54% (1/184) 6.75 0.009295 0.043358
GO:0004163 diphosphomevalonate decarboxylase activity 0.54% (1/184) 6.75 0.009295 0.043358
GO:0008836 diaminopimelate decarboxylase activity 0.54% (1/184) 6.75 0.009295 0.043358
GO:1901135 carbohydrate derivative metabolic process 3.26% (6/184) 1.74 0.009623 0.044594
GO:0030554 adenyl nucleotide binding 13.04% (24/184) 0.76 0.008164 0.045577
GO:1901564 organonitrogen compound metabolic process 17.93% (33/184) 0.6 0.009919 0.045667
GO:1901137 carbohydrate derivative biosynthetic process 2.17% (4/184) 2.25 0.01041 0.047012
GO:0008150 biological_process 45.65% (84/184) 0.3 0.010408 0.047305
GO:0001522 pseudouridine synthesis 1.09% (2/184) 3.7 0.010365 0.047412
GO:0006633 fatty acid biosynthetic process 1.63% (3/184) 2.84 0.008684 0.048102
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (184) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms