Coexpression cluster: Cluster_8 (Zea mays HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003824 catalytic activity 48.52% (82/169) 0.83 0.0 1e-06
GO:0003674 molecular_function 74.56% (126/169) 0.51 0.0 1e-06
GO:0016491 oxidoreductase activity 15.38% (26/169) 1.83 0.0 4e-06
GO:0009072 aromatic amino acid metabolic process 3.55% (6/169) 4.13 1e-06 0.000174
GO:0022857 transmembrane transporter activity 10.65% (18/169) 1.77 7e-06 0.000714
GO:0005215 transporter activity 10.65% (18/169) 1.72 1e-05 0.000924
GO:0003934 GTP cyclohydrolase I activity 1.18% (2/169) 7.87 1.8e-05 0.000974
GO:1901564 organonitrogen compound metabolic process 23.67% (40/169) 1.0 1.3e-05 0.000995
GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen 2.96% (5/169) 3.98 1.7e-05 0.001019
GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway 1.78% (3/169) 5.75 2.1e-05 0.001037
GO:1901605 alpha-amino acid metabolic process 4.14% (7/169) 3.14 1.7e-05 0.001112
GO:0044281 small molecule metabolic process 9.47% (16/169) 1.72 3.4e-05 0.001514
GO:0006520 amino acid metabolic process 5.33% (9/169) 2.45 4.6e-05 0.001889
GO:0009073 aromatic amino acid family biosynthetic process 2.37% (4/169) 4.31 5e-05 0.00191
GO:0008977 prephenate dehydrogenase (NAD+) activity 1.18% (2/169) 6.87 0.000109 0.002641
GO:0004665 prephenate dehydrogenase (NADP+) activity 1.18% (2/169) 6.87 0.000109 0.002641
GO:0033730 arogenate dehydrogenase (NADP+) activity 1.18% (2/169) 6.87 0.000109 0.002641
GO:0033731 arogenate dehydrogenase [NAD(P)+] activity 1.18% (2/169) 6.87 0.000109 0.002641
GO:0006571 tyrosine biosynthetic process 1.18% (2/169) 6.87 0.000109 0.002641
GO:0006558 L-phenylalanine metabolic process 1.78% (3/169) 5.13 8.3e-05 0.00278
GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process 1.78% (3/169) 5.13 8.3e-05 0.00278
GO:0008150 biological_process 51.48% (87/169) 0.47 9.3e-05 0.002914
GO:0055085 transmembrane transport 8.28% (14/169) 1.67 0.000146 0.00339
GO:0016020 membrane 10.06% (17/169) 1.47 0.000153 0.003401
GO:0006570 tyrosine metabolic process 1.18% (2/169) 6.55 0.00018 0.003448
GO:0051213 dioxygenase activity 2.37% (4/169) 3.85 0.000179 0.00354
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen 2.37% (4/169) 3.85 0.000179 0.00354
GO:1901362 organic cyclic compound biosynthetic process 6.51% (11/169) 1.93 0.000174 0.003717
GO:0006082 organic acid metabolic process 6.51% (11/169) 1.88 0.000223 0.003847
GO:0043436 oxoacid metabolic process 6.51% (11/169) 1.89 0.00022 0.003927
GO:0019752 carboxylic acid metabolic process 6.51% (11/169) 1.89 0.000218 0.004013
GO:0046654 tetrahydrofolate biosynthetic process 1.18% (2/169) 6.28 0.00027 0.004513
GO:1901606 alpha-amino acid catabolic process 1.78% (3/169) 4.5 0.000317 0.005134
GO:0019438 aromatic compound biosynthetic process 5.92% (10/169) 1.93 0.000332 0.005229
GO:0009063 amino acid catabolic process 1.78% (3/169) 4.45 0.000348 0.005325
GO:0003933 GTP cyclohydrolase activity 1.18% (2/169) 6.06 0.000377 0.0056
GO:0008152 metabolic process 33.14% (56/169) 0.61 0.000404 0.005839
GO:0071704 organic substance metabolic process 31.36% (53/169) 0.62 0.000501 0.006872
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor 1.78% (3/169) 4.28 0.000495 0.006972
GO:0016874 ligase activity 3.55% (6/169) 2.53 0.000641 0.00857
GO:0019238 cyclohydrolase activity 1.18% (2/169) 5.55 0.000801 0.010448
GO:0003883 CTP synthase activity 1.18% (2/169) 5.41 0.000976 0.011866
GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process 1.18% (2/169) 5.41 0.000976 0.011866
GO:0006559 L-phenylalanine catabolic process 1.18% (2/169) 5.41 0.000976 0.011866
GO:0016054 organic acid catabolic process 1.78% (3/169) 3.93 0.00102 0.011868
GO:0046395 carboxylic acid catabolic process 1.78% (3/169) 3.93 0.00102 0.011868
GO:0046653 tetrahydrofolate metabolic process 1.18% (2/169) 5.28 0.001168 0.013293
GO:0016841 ammonia-lyase activity 1.18% (2/169) 5.17 0.001376 0.015339
GO:0046394 carboxylic acid biosynthetic process 3.55% (6/169) 2.23 0.001859 0.017151
GO:0016053 organic acid biosynthetic process 3.55% (6/169) 2.23 0.001859 0.017151
GO:0009396 folic acid-containing compound biosynthetic process 1.18% (2/169) 5.06 0.001601 0.017481
GO:0046036 CTP metabolic process 1.18% (2/169) 4.96 0.001842 0.0176
GO:0009209 pyrimidine ribonucleoside triphosphate biosynthetic process 1.18% (2/169) 4.96 0.001842 0.0176
GO:0009208 pyrimidine ribonucleoside triphosphate metabolic process 1.18% (2/169) 4.96 0.001842 0.0176
GO:0009148 pyrimidine nucleoside triphosphate biosynthetic process 1.18% (2/169) 4.96 0.001842 0.0176
GO:0006241 CTP biosynthetic process 1.18% (2/169) 4.96 0.001842 0.0176
GO:0044238 primary metabolic process 28.4% (48/169) 0.58 0.001959 0.017762
GO:0009201 ribonucleoside triphosphate biosynthetic process 1.78% (3/169) 3.67 0.001715 0.017986
GO:0009142 nucleoside triphosphate biosynthetic process 1.78% (3/169) 3.67 0.001715 0.017986
GO:0009147 pyrimidine nucleoside triphosphate metabolic process 1.18% (2/169) 4.87 0.002099 0.018413
GO:0042559 pteridine-containing compound biosynthetic process 1.18% (2/169) 4.87 0.002099 0.018413
GO:1901607 alpha-amino acid biosynthetic process 2.37% (4/169) 2.87 0.002285 0.01972
GO:0009074 aromatic amino acid family catabolic process 1.18% (2/169) 4.78 0.002373 0.020149
GO:0043167 ion binding 21.89% (37/169) 0.67 0.002693 0.021188
GO:0009218 pyrimidine ribonucleotide metabolic process 1.18% (2/169) 4.7 0.002662 0.021255
GO:0009220 pyrimidine ribonucleotide biosynthetic process 1.18% (2/169) 4.7 0.002662 0.021255
GO:1901566 organonitrogen compound biosynthetic process 7.1% (12/169) 1.37 0.002576 0.021533
GO:0044282 small molecule catabolic process 1.78% (3/169) 3.45 0.002647 0.021791
GO:0006810 transport 10.06% (17/169) 1.09 0.00282 0.021868
GO:0006807 nitrogen compound metabolic process 24.26% (41/169) 0.6 0.00347 0.026523
GO:0008652 amino acid biosynthetic process 2.37% (4/169) 2.68 0.003667 0.026876
GO:0051234 establishment of localization 10.06% (17/169) 1.05 0.003625 0.026936
GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines 1.18% (2/169) 4.48 0.003623 0.027299
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors 1.78% (3/169) 3.24 0.003993 0.028481
GO:0051179 localization 10.06% (17/169) 1.04 0.004062 0.028598
GO:0006760 folic acid-containing compound metabolic process 1.18% (2/169) 4.41 0.003974 0.028731
GO:0004047 aminomethyltransferase activity 0.59% (1/169) 7.87 0.004279 0.029347
GO:0018580 nitronate monooxygenase activity 0.59% (1/169) 7.87 0.004279 0.029347
GO:0009199 ribonucleoside triphosphate metabolic process 2.37% (4/169) 2.58 0.004638 0.031016
GO:0042558 pteridine-containing compound metabolic process 1.18% (2/169) 4.28 0.004722 0.031186
GO:0016879 ligase activity, forming carbon-nitrogen bonds 1.78% (3/169) 3.17 0.004628 0.03134
GO:0006629 lipid metabolic process 5.33% (9/169) 1.5 0.00486 0.031708
GO:0009141 nucleoside triphosphate metabolic process 2.37% (4/169) 2.48 0.006014 0.038766
GO:0044283 small molecule biosynthetic process 3.55% (6/169) 1.88 0.006233 0.039698
GO:0022804 active transmembrane transporter activity 3.55% (6/169) 1.87 0.00631 0.039718
GO:0006796 phosphate-containing compound metabolic process 10.65% (18/169) 0.92 0.007014 0.043634
GO:0042398 cellular modified amino acid biosynthetic process 1.18% (2/169) 3.96 0.007318 0.044488
GO:0006793 phosphorus metabolic process 10.65% (18/169) 0.92 0.007236 0.044494
GO:0015297 antiporter activity 1.78% (3/169) 2.91 0.007534 0.045291
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (169) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms