Coexpression cluster: Cluster_193 (Zea mays HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0032991 protein-containing complex 25.86% (15/58) 2.6 0.0 5e-06
GO:0005575 cellular_component 32.76% (19/58) 1.43 3.3e-05 0.002451
GO:0003674 molecular_function 77.59% (45/58) 0.57 5.9e-05 0.002743
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) 3.45% (2/58) 7.83 3.2e-05 0.002921
GO:0045239 tricarboxylic acid cycle enzyme complex 3.45% (2/58) 7.83 3.2e-05 0.002921
GO:0000502 proteasome complex 3.45% (2/58) 7.41 5.9e-05 0.00311
GO:0034660 ncRNA metabolic process 8.62% (5/58) 3.62 5.5e-05 0.003403
GO:0016417 S-acyltransferase activity 3.45% (2/58) 8.09 2.1e-05 0.003899
GO:1905369 endopeptidase complex 3.45% (2/58) 6.5 0.00022 0.009012
GO:0003743 translation initiation factor activity 5.17% (3/58) 4.62 0.000254 0.009372
GO:0042176 regulation of protein catabolic process 3.45% (2/58) 6.32 0.000284 0.009532
GO:0032040 small-subunit processome 3.45% (2/58) 5.83 0.000573 0.010066
GO:0009894 regulation of catabolic process 3.45% (2/58) 5.89 0.000526 0.010208
GO:0140299 small molecule sensor activity 3.45% (2/58) 5.89 0.000526 0.010208
GO:0000155 phosphorelay sensor kinase activity 3.45% (2/58) 5.89 0.000526 0.010208
GO:0004673 protein histidine kinase activity 3.45% (2/58) 5.89 0.000526 0.010208
GO:0016775 phosphotransferase activity, nitrogenous group as acceptor 3.45% (2/58) 5.89 0.000526 0.010208
GO:0016072 rRNA metabolic process 5.17% (3/58) 4.23 0.000565 0.010421
GO:0016070 RNA metabolic process 12.07% (7/58) 2.23 0.000692 0.011614
GO:0030684 preribosome 3.45% (2/58) 5.66 0.000726 0.011655
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) 3.45% (2/58) 5.95 0.00048 0.012661
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism 3.45% (2/58) 5.46 0.000959 0.013103
GO:1905368 peptidase complex 3.45% (2/58) 5.46 0.000959 0.013103
GO:0015252 proton channel activity 3.45% (2/58) 5.46 0.000959 0.013103
GO:0006139 nucleobase-containing compound metabolic process 17.24% (10/58) 1.67 0.001025 0.013507
GO:0006364 rRNA processing 5.17% (3/58) 4.31 0.000479 0.01359
GO:0016874 ligase activity 6.9% (4/58) 3.49 0.00045 0.013833
GO:1902494 catalytic complex 8.62% (5/58) 2.74 0.000902 0.013873
GO:0090079 translation regulator activity, nucleic acid binding 5.17% (3/58) 3.86 0.00119 0.014639
GO:0008135 translation factor activity, RNA binding 5.17% (3/58) 3.86 0.00119 0.014639
GO:0005852 eukaryotic translation initiation factor 3 complex 3.45% (2/58) 5.24 0.001293 0.01539
GO:0006754 ATP biosynthetic process 3.45% (2/58) 5.09 0.001595 0.015485
GO:0015986 proton motive force-driven ATP synthesis 3.45% (2/58) 5.09 0.001595 0.015485
GO:0008152 metabolic process 39.66% (23/58) 0.87 0.001533 0.01571
GO:0045182 translation regulator activity 5.17% (3/58) 3.79 0.001368 0.015772
GO:0008150 biological_process 56.9% (33/58) 0.62 0.001674 0.01584
GO:0005216 monoatomic ion channel activity 5.17% (3/58) 3.74 0.001504 0.01586
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex 1.72% (1/58) 9.41 0.001468 0.015937
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain 3.45% (2/58) 5.16 0.00144 0.016102
GO:0046483 heterocycle metabolic process 17.24% (10/58) 1.55 0.001919 0.017705
GO:0006099 tricarboxylic acid cycle 3.45% (2/58) 4.89 0.002104 0.018486
GO:0006725 cellular aromatic compound metabolic process 17.24% (10/58) 1.53 0.002076 0.018687
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 3.45% (2/58) 4.83 0.002289 0.019195
GO:0009145 purine nucleoside triphosphate biosynthetic process 3.45% (2/58) 4.83 0.002289 0.019195
GO:0009201 ribonucleoside triphosphate biosynthetic process 3.45% (2/58) 4.63 0.002994 0.019379
GO:0009142 nucleoside triphosphate biosynthetic process 3.45% (2/58) 4.63 0.002994 0.019379
GO:0034470 ncRNA processing 5.17% (3/58) 3.5 0.002427 0.019467
GO:1901360 organic cyclic compound metabolic process 17.24% (10/58) 1.51 0.002385 0.019561
GO:0045240 dihydrolipoyl dehydrogenase complex 1.72% (1/58) 8.41 0.002935 0.019689
GO:0045252 oxoglutarate dehydrogenase complex 1.72% (1/58) 8.41 0.002935 0.019689
GO:0004149 dihydrolipoyllysine-residue succinyltransferase activity 1.72% (1/58) 8.41 0.002935 0.019689
GO:0016751 S-succinyltransferase activity 1.72% (1/58) 8.41 0.002935 0.019689
GO:0016748 succinyltransferase activity 1.72% (1/58) 8.41 0.002935 0.019689
GO:0030124 AP-4 adaptor complex 1.72% (1/58) 8.41 0.002935 0.019689
GO:0004742 dihydrolipoyllysine-residue acetyltransferase activity 1.72% (1/58) 8.41 0.002935 0.019689
GO:0016418 S-acetyltransferase activity 1.72% (1/58) 8.41 0.002935 0.019689
GO:0005488 binding 50.0% (29/58) 0.66 0.002728 0.02142
GO:0140098 catalytic activity, acting on RNA 6.9% (4/58) 2.69 0.003488 0.022189
GO:0003723 RNA binding 10.34% (6/58) 2.0 0.003792 0.02221
GO:0098800 inner mitochondrial membrane protein complex 3.45% (2/58) 4.5 0.003551 0.022211
GO:0015267 channel activity 5.17% (3/58) 3.28 0.003736 0.022235
GO:0022803 passive transmembrane transporter activity 5.17% (3/58) 3.28 0.003736 0.022235
GO:0090304 nucleic acid metabolic process 13.79% (8/58) 1.66 0.003624 0.022289
GO:0044238 primary metabolic process 34.48% (20/58) 0.86 0.003914 0.022566
GO:0006428 isoleucyl-tRNA aminoacylation 1.72% (1/58) 7.83 0.004399 0.023189
GO:0004831 tyrosine-tRNA ligase activity 1.72% (1/58) 7.83 0.004399 0.023189
GO:0042134 rRNA primary transcript binding 1.72% (1/58) 7.83 0.004399 0.023189
GO:0008186 ATP-dependent activity, acting on RNA 3.45% (2/58) 4.39 0.004154 0.023223
GO:0003724 RNA helicase activity 3.45% (2/58) 4.39 0.004154 0.023223
GO:0005515 protein binding 24.14% (14/58) 1.1 0.004315 0.023765
GO:0098798 mitochondrial protein-containing complex 3.45% (2/58) 4.26 0.004935 0.025646
GO:0003676 nucleic acid binding 20.69% (12/58) 1.19 0.005201 0.026292
GO:0006396 RNA processing 6.9% (4/58) 2.53 0.005136 0.02632
GO:0005261 monoatomic cation channel activity 3.45% (2/58) 4.13 0.005924 0.028025
GO:0004333 fumarate hydratase activity 1.72% (1/58) 7.41 0.005861 0.028087
GO:0004576 oligosaccharyl transferase activity 1.72% (1/58) 7.41 0.005861 0.028087
GO:0000338 protein deneddylation 1.72% (1/58) 7.41 0.005861 0.028087
GO:0006106 fumarate metabolic process 1.72% (1/58) 7.41 0.005861 0.028087
GO:1990204 oxidoreductase complex 3.45% (2/58) 4.11 0.006072 0.028363
GO:0044281 small molecule metabolic process 10.34% (6/58) 1.84 0.006412 0.029574
GO:1902600 proton transmembrane transport 3.45% (2/58) 4.02 0.006838 0.031152
GO:0010105 negative regulation of ethylene-activated signaling pathway 1.72% (1/58) 6.83 0.008779 0.032073
GO:0070298 negative regulation of phosphorelay signal transduction system 1.72% (1/58) 6.83 0.008779 0.032073
GO:0070297 regulation of phosphorelay signal transduction system 1.72% (1/58) 6.83 0.008779 0.032073
GO:0010104 regulation of ethylene-activated signaling pathway 1.72% (1/58) 6.83 0.008779 0.032073
GO:0006305 DNA alkylation 1.72% (1/58) 6.83 0.008779 0.032073
GO:0006306 DNA methylation 1.72% (1/58) 6.83 0.008779 0.032073
GO:0004822 isoleucine-tRNA ligase activity 1.72% (1/58) 6.83 0.008779 0.032073
GO:0005849 mRNA cleavage factor complex 1.72% (1/58) 6.83 0.008779 0.032073
GO:0019899 enzyme binding 3.45% (2/58) 3.99 0.007156 0.032204
GO:0008180 COP9 signalosome 1.72% (1/58) 7.09 0.007321 0.032548
GO:0004812 aminoacyl-tRNA ligase activity 3.45% (2/58) 3.9 0.00798 0.03272
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.45% (2/58) 3.9 0.00798 0.03272
GO:0043038 amino acid activation 3.45% (2/58) 3.9 0.00798 0.03272
GO:0043039 tRNA aminoacylation 3.45% (2/58) 3.9 0.00798 0.03272
GO:0009152 purine ribonucleotide biosynthetic process 3.45% (2/58) 3.89 0.00815 0.033048
GO:0006807 nitrogen compound metabolic process 29.31% (17/58) 0.87 0.007726 0.033149
GO:0043414 macromolecule methylation 3.45% (2/58) 3.94 0.007646 0.033192
GO:0006418 tRNA aminoacylation for protein translation 3.45% (2/58) 3.94 0.007646 0.033192
GO:0034641 cellular nitrogen compound metabolic process 17.24% (10/58) 1.25 0.00846 0.033931
GO:0071704 organic substance metabolic process 34.48% (20/58) 0.76 0.008739 0.034673
GO:0009260 ribonucleotide biosynthetic process 3.45% (2/58) 3.74 0.009935 0.035594
GO:0046390 ribose phosphate biosynthetic process 3.45% (2/58) 3.74 0.009935 0.035594
GO:0140597 protein carrier chaperone 1.72% (1/58) 6.6 0.010235 0.035628
GO:0005759 mitochondrial matrix 1.72% (1/58) 6.6 0.010235 0.035628
GO:0032977 membrane insertase activity 1.72% (1/58) 6.6 0.010235 0.035628
GO:0006378 mRNA polyadenylation 1.72% (1/58) 6.41 0.011688 0.038856
GO:1902532 negative regulation of intracellular signal transduction 1.72% (1/58) 6.41 0.011688 0.038856
GO:0006379 obsolete mRNA cleavage 1.72% (1/58) 6.41 0.011688 0.038856
GO:0048583 regulation of response to stimulus 3.45% (2/58) 3.64 0.011279 0.038897
GO:0051246 regulation of protein metabolic process 3.45% (2/58) 3.62 0.011677 0.039896
GO:0006812 monoatomic cation transport 5.17% (3/58) 2.64 0.012504 0.04083
GO:0032259 methylation 3.45% (2/58) 3.55 0.012698 0.041101
GO:0006164 purine nucleotide biosynthetic process 3.45% (2/58) 3.57 0.012491 0.041153
GO:0045254 pyruvate dehydrogenase complex 1.72% (1/58) 6.24 0.01314 0.041798
GO:0043170 macromolecule metabolic process 25.86% (15/58) 0.87 0.013097 0.042024
GO:0008237 metallopeptidase activity 3.45% (2/58) 3.47 0.014191 0.044755
GO:0023057 negative regulation of signaling 1.72% (1/58) 6.09 0.014589 0.044862
GO:0010648 negative regulation of cell communication 1.72% (1/58) 6.09 0.014589 0.044862
GO:0009968 negative regulation of signal transduction 1.72% (1/58) 6.09 0.014589 0.044862
GO:0140101 catalytic activity, acting on a tRNA 3.45% (2/58) 3.42 0.015076 0.045976
GO:0072522 purine-containing compound biosynthetic process 3.45% (2/58) 3.41 0.015301 0.04628
GO:0006304 DNA modification 1.72% (1/58) 5.95 0.016037 0.04811
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (58) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms