Coexpression cluster: Cluster_152 (Zea mays HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003735 structural constituent of ribosome 25.88% (22/85) 4.14 0.0 0.0
GO:0006518 peptide metabolic process 25.88% (22/85) 4.06 0.0 0.0
GO:0005840 ribosome 24.71% (21/85) 4.19 0.0 0.0
GO:0009059 macromolecule biosynthetic process 30.59% (26/85) 3.56 0.0 0.0
GO:0006412 translation 24.71% (21/85) 4.11 0.0 0.0
GO:0043603 amide metabolic process 25.88% (22/85) 3.92 0.0 0.0
GO:0043043 peptide biosynthetic process 24.71% (21/85) 4.07 0.0 0.0
GO:0005198 structural molecule activity 25.88% (22/85) 3.89 0.0 0.0
GO:0043604 amide biosynthetic process 24.71% (21/85) 3.98 0.0 0.0
GO:0043228 non-membrane-bounded organelle 24.71% (21/85) 3.86 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 24.71% (21/85) 3.86 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 28.24% (24/85) 3.36 0.0 0.0
GO:0044249 cellular biosynthetic process 34.12% (29/85) 2.87 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 28.24% (24/85) 3.2 0.0 0.0
GO:1901576 organic substance biosynthetic process 34.12% (29/85) 2.75 0.0 0.0
GO:0009058 biosynthetic process 34.12% (29/85) 2.66 0.0 0.0
GO:0005575 cellular_component 47.06% (40/85) 1.95 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 36.47% (31/85) 2.33 0.0 0.0
GO:0043229 intracellular organelle 25.88% (22/85) 2.81 0.0 0.0
GO:0043226 organelle 25.88% (22/85) 2.81 0.0 0.0
GO:0043170 macromolecule metabolic process 44.71% (38/85) 1.66 0.0 0.0
GO:0044237 cellular metabolic process 45.88% (39/85) 1.6 0.0 0.0
GO:0006807 nitrogen compound metabolic process 45.88% (39/85) 1.52 0.0 0.0
GO:0008097 5S rRNA binding 4.71% (4/85) 8.54 0.0 0.0
GO:0030515 snoRNA binding 5.88% (5/85) 7.09 0.0 0.0
GO:0008152 metabolic process 52.94% (45/85) 1.28 0.0 0.0
GO:0003723 RNA binding 18.82% (16/85) 2.86 0.0 0.0
GO:0071704 organic substance metabolic process 50.59% (43/85) 1.31 0.0 0.0
GO:0003676 nucleic acid binding 32.94% (28/85) 1.86 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 37.65% (32/85) 1.67 0.0 0.0
GO:1990904 ribonucleoprotein complex 10.59% (9/85) 4.09 0.0 0.0
GO:0031428 box C/D RNP complex 4.71% (4/85) 7.4 0.0 0.0
GO:0019843 rRNA binding 5.88% (5/85) 6.01 0.0 0.0
GO:0009987 cellular process 51.76% (44/85) 1.13 0.0 0.0
GO:0110165 cellular anatomical entity 29.41% (25/85) 1.76 0.0 0.0
GO:0019538 protein metabolic process 30.59% (26/85) 1.7 0.0 0.0
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex 4.71% (4/85) 6.77 0.0 0.0
GO:0044238 primary metabolic process 44.71% (38/85) 1.23 0.0 1e-06
GO:0032991 protein-containing complex 20.0% (17/85) 2.23 0.0 1e-06
GO:0032040 small-subunit processome 4.71% (4/85) 6.28 0.0 2e-06
GO:0030684 preribosome 4.71% (4/85) 6.11 0.0 3e-06
GO:0003746 translation elongation factor activity 4.71% (4/85) 5.73 1e-06 8e-06
GO:0006414 translational elongation 4.71% (4/85) 5.22 4e-06 3.4e-05
GO:0008135 translation factor activity, RNA binding 5.88% (5/85) 4.04 1.4e-05 0.000109
GO:0090079 translation regulator activity, nucleic acid binding 5.88% (5/85) 4.04 1.4e-05 0.000109
GO:0008150 biological_process 60.0% (51/85) 0.69 1.5e-05 0.000112
GO:0045182 translation regulator activity 5.88% (5/85) 3.97 1.8e-05 0.000131
GO:0097159 organic cyclic compound binding 37.65% (32/85) 0.98 4.7e-05 0.000337
GO:0017111 ribonucleoside triphosphate phosphatase activity 8.24% (7/85) 2.29 0.000589 0.004174
GO:0003674 molecular_function 69.41% (59/85) 0.41 0.000927 0.006306
GO:0016462 pyrophosphatase activity 8.24% (7/85) 2.18 0.000923 0.006403
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 8.24% (7/85) 2.15 0.001024 0.00683
GO:0016817 hydrolase activity, acting on acid anhydrides 8.24% (7/85) 2.14 0.001081 0.00708
GO:0004164 diphthine synthase activity 1.18% (1/85) 8.86 0.002152 0.013101
GO:0001056 RNA polymerase III activity 1.18% (1/85) 8.86 0.002152 0.013101
GO:0001401 SAM complex 1.18% (1/85) 8.86 0.002152 0.013101
GO:0001054 RNA polymerase I activity 1.18% (1/85) 8.86 0.002152 0.013101
GO:0003924 GTPase activity 4.71% (4/85) 2.78 0.002839 0.016987
GO:0004637 phosphoribosylamine-glycine ligase activity 1.18% (1/85) 7.86 0.004299 0.025286
GO:0005839 proteasome core complex 2.35% (2/85) 4.31 0.004646 0.02687
GO:1902494 catalytic complex 5.88% (5/85) 2.19 0.004871 0.027708
GO:0005525 GTP binding 4.71% (4/85) 2.54 0.005061 0.027877
GO:0032561 guanyl ribonucleotide binding 4.71% (4/85) 2.54 0.005061 0.027877
GO:0019001 guanyl nucleotide binding 4.71% (4/85) 2.52 0.005287 0.028665
GO:0005740 mitochondrial envelope 1.18% (1/85) 7.28 0.006442 0.032398
GO:0006123 mitochondrial electron transport, cytochrome c to oxygen 1.18% (1/85) 7.28 0.006442 0.032398
GO:0031975 envelope 1.18% (1/85) 7.28 0.006442 0.032398
GO:0031967 organelle envelope 1.18% (1/85) 7.28 0.006442 0.032398
GO:0034511 U3 snoRNA binding 1.18% (1/85) 7.28 0.006442 0.032398
GO:0008186 ATP-dependent activity, acting on RNA 2.35% (2/85) 3.84 0.008719 0.040884
GO:0003724 RNA helicase activity 2.35% (2/85) 3.84 0.008719 0.040884
GO:0005751 mitochondrial respiratory chain complex IV 1.18% (1/85) 6.86 0.008581 0.041354
GO:0004824 lysine-tRNA ligase activity 1.18% (1/85) 6.86 0.008581 0.041354
GO:0006430 lysyl-tRNA aminoacylation 1.18% (1/85) 6.86 0.008581 0.041354
GO:0098798 mitochondrial protein-containing complex 2.35% (2/85) 3.71 0.01033 0.047793
GO:0000027 ribosomal large subunit assembly 1.18% (1/85) 6.54 0.010714 0.048284
GO:0004455 ketol-acid reductoisomerase activity 1.18% (1/85) 6.54 0.010714 0.048284
GO:0015934 large ribosomal subunit 2.35% (2/85) 3.65 0.011181 0.049742
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (85) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms