Coexpression cluster: Cluster_115 (Zea mays HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1990837 sequence-specific double-stranded DNA binding 5.17% (6/116) 4.44 0.0 2.6e-05
GO:0032502 developmental process 6.9% (8/116) 3.62 0.0 3.1e-05
GO:0000976 transcription cis-regulatory region binding 5.17% (6/116) 4.52 0.0 3.8e-05
GO:0001067 transcription regulatory region nucleic acid binding 5.17% (6/116) 4.52 0.0 3.8e-05
GO:0003700 DNA-binding transcription factor activity 12.93% (15/116) 2.06 3e-06 0.000173
GO:0003690 double-stranded DNA binding 5.17% (6/116) 3.78 5e-06 0.00022
GO:0140110 transcription regulator activity 12.93% (15/116) 1.98 6e-06 0.000227
GO:0048856 anatomical structure development 5.17% (6/116) 3.79 5e-06 0.000247
GO:0045944 positive regulation of transcription by RNA polymerase II 3.45% (4/116) 4.24 6.2e-05 0.001094
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 3.45% (4/116) 4.26 5.9e-05 0.001104
GO:0043565 sequence-specific DNA binding 6.9% (8/116) 2.61 5.5e-05 0.00111
GO:0019219 regulation of nucleobase-containing compound metabolic process 13.79% (16/116) 1.64 5.4e-05 0.001175
GO:0051252 regulation of RNA metabolic process 13.79% (16/116) 1.65 4.8e-05 0.001238
GO:0065007 biological regulation 18.1% (21/116) 1.37 5.4e-05 0.001263
GO:2001141 regulation of RNA biosynthetic process 13.79% (16/116) 1.66 4.6e-05 0.001289
GO:0006355 regulation of DNA-templated transcription 13.79% (16/116) 1.66 4.6e-05 0.001289
GO:0031326 regulation of cellular biosynthetic process 13.79% (16/116) 1.53 0.000131 0.001606
GO:0009889 regulation of biosynthetic process 13.79% (16/116) 1.53 0.000131 0.001606
GO:0080090 regulation of primary metabolic process 13.79% (16/116) 1.55 0.000114 0.001689
GO:0010556 regulation of macromolecule biosynthetic process 13.79% (16/116) 1.53 0.00013 0.001737
GO:0050789 regulation of biological process 17.24% (20/116) 1.33 0.000113 0.001767
GO:0010468 regulation of gene expression 13.79% (16/116) 1.53 0.000127 0.00178
GO:0051171 regulation of nitrogen compound metabolic process 13.79% (16/116) 1.55 0.00011 0.001818
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 3.45% (4/116) 3.73 0.00025 0.002191
GO:0009891 positive regulation of biosynthetic process 3.45% (4/116) 3.68 0.000279 0.002236
GO:0031328 positive regulation of cellular biosynthetic process 3.45% (4/116) 3.68 0.000279 0.002236
GO:0010557 positive regulation of macromolecule biosynthetic process 3.45% (4/116) 3.68 0.000279 0.002236
GO:0019222 regulation of metabolic process 13.79% (16/116) 1.45 0.000249 0.00226
GO:0007275 multicellular organism development 2.59% (3/116) 4.64 0.000243 0.002272
GO:0048518 positive regulation of biological process 4.31% (5/116) 3.18 0.000242 0.002348
GO:1902680 positive regulation of RNA biosynthetic process 3.45% (4/116) 3.74 0.00024 0.002413
GO:0045893 positive regulation of DNA-templated transcription 3.45% (4/116) 3.74 0.00024 0.002413
GO:0051254 positive regulation of RNA metabolic process 3.45% (4/116) 3.74 0.00024 0.002413
GO:0031323 regulation of cellular metabolic process 13.79% (16/116) 1.47 0.00021 0.002464
GO:0060255 regulation of macromolecule metabolic process 13.79% (16/116) 1.46 0.00022 0.002476
GO:0031325 positive regulation of cellular metabolic process 3.45% (4/116) 3.5 0.000446 0.003483
GO:0099402 plant organ development 2.59% (3/116) 4.3 0.000491 0.00373
GO:0048522 positive regulation of cellular process 3.45% (4/116) 3.4 0.000586 0.004334
GO:0001708 cell fate specification 1.72% (2/116) 5.71 0.000653 0.004369
GO:0010158 abaxial cell fate specification 1.72% (2/116) 5.71 0.000653 0.004369
GO:0009893 positive regulation of metabolic process 3.45% (4/116) 3.33 0.000695 0.004438
GO:0003674 molecular_function 67.24% (78/116) 0.37 0.000714 0.004456
GO:0003677 DNA binding 12.93% (15/116) 1.37 0.000683 0.004463
GO:0051173 positive regulation of nitrogen compound metabolic process 3.45% (4/116) 3.37 0.000639 0.004488
GO:0010604 positive regulation of macromolecule metabolic process 3.45% (4/116) 3.37 0.000639 0.004488
GO:0050794 regulation of cellular process 14.66% (17/116) 1.18 0.001244 0.007598
GO:0006357 regulation of transcription by RNA polymerase II 3.45% (4/116) 3.07 0.001367 0.00817
GO:0032501 multicellular organismal process 2.59% (3/116) 3.49 0.002485 0.014545
GO:0048869 cellular developmental process 1.72% (2/116) 4.46 0.003761 0.021567
GO:0016491 oxidoreductase activity 10.34% (12/116) 1.25 0.004606 0.025884
GO:0009812 flavonoid metabolic process 0.86% (1/116) 7.41 0.005865 0.029431
GO:0009834 plant-type secondary cell wall biogenesis 0.86% (1/116) 7.41 0.005865 0.029431
GO:0009813 flavonoid biosynthetic process 0.86% (1/116) 7.41 0.005865 0.029431
GO:0061635 regulation of protein complex stability 0.86% (1/116) 7.41 0.005865 0.029431
GO:0045430 chalcone isomerase activity 0.86% (1/116) 7.41 0.005865 0.029431
GO:0009832 plant-type cell wall biogenesis 0.86% (1/116) 7.41 0.005865 0.029431
GO:0042753 positive regulation of circadian rhythm 0.86% (1/116) 6.83 0.008785 0.043308
GO:0046983 protein dimerization activity 5.17% (6/116) 1.72 0.010066 0.048768
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (116) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms