Coexpression cluster: Cluster_191 (Zea mays HCCA coexpression clusters - Leiboff and Hake (2019))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003676 nucleic acid binding 33.33% (16/48) 1.88 3e-06 0.000476
GO:0043414 macromolecule methylation 8.33% (4/48) 5.21 4e-06 0.000513
GO:0140640 catalytic activity, acting on a nucleic acid 18.75% (9/48) 2.98 2e-06 0.000593
GO:0032259 methylation 8.33% (4/48) 4.83 1.2e-05 0.001101
GO:0043227 membrane-bounded organelle 14.58% (7/48) 2.86 4.6e-05 0.00233
GO:0043231 intracellular membrane-bounded organelle 14.58% (7/48) 2.86 4.6e-05 0.00233
GO:0005488 binding 60.42% (29/48) 0.93 3.7e-05 0.002652
GO:0140657 ATP-dependent activity 14.58% (7/48) 2.7 9.1e-05 0.003578
GO:0016570 histone modification 6.25% (3/48) 5.0 0.000116 0.003722
GO:0046483 heterocycle metabolic process 22.92% (11/48) 1.96 8.6e-05 0.003814
GO:1901360 organic cyclic compound metabolic process 22.92% (11/48) 1.92 0.000112 0.003974
GO:0006139 nucleobase-containing compound metabolic process 20.83% (10/48) 1.94 0.00021 0.005724
GO:0090304 nucleic acid metabolic process 18.75% (9/48) 2.1 0.000207 0.006094
GO:0097159 organic cyclic compound binding 41.67% (20/48) 1.13 0.000249 0.006287
GO:0006396 RNA processing 10.42% (5/48) 3.12 0.000268 0.006314
GO:0034968 histone lysine methylation 4.17% (2/48) 6.16 0.00036 0.006706
GO:0016571 histone methylation 4.17% (2/48) 6.16 0.00036 0.006706
GO:0043229 intracellular organelle 16.67% (8/48) 2.17 0.000347 0.00723
GO:0043226 organelle 16.67% (8/48) 2.17 0.000347 0.00723
GO:0006725 cellular aromatic compound metabolic process 20.83% (10/48) 1.81 0.000447 0.007914
GO:0043167 ion binding 33.33% (16/48) 1.27 0.000471 0.007932
GO:0018022 peptidyl-lysine methylation 4.17% (2/48) 5.93 0.000498 0.008011
GO:0034641 cellular nitrogen compound metabolic process 22.92% (11/48) 1.66 0.000535 0.008229
GO:0043170 macromolecule metabolic process 33.33% (16/48) 1.24 0.000619 0.008766
GO:0018024 obsolete histone lysine N-methyltransferase activity 4.17% (2/48) 5.78 0.000616 0.009079
GO:0005634 nucleus 10.42% (5/48) 2.77 0.000825 0.010426
GO:0006807 nitrogen compound metabolic process 35.42% (17/48) 1.15 0.000812 0.010642
GO:0001510 RNA methylation 4.17% (2/48) 5.6 0.000791 0.010775
GO:0003674 molecular_function 75.0% (36/48) 0.52 0.001017 0.012415
GO:0140666 annealing activity 2.08% (1/48) 9.68 0.001215 0.012653
GO:0036310 ATP-dependent DNA/DNA annealing activity 2.08% (1/48) 9.68 0.001215 0.012653
GO:0005663 DNA replication factor C complex 2.08% (1/48) 9.68 0.001215 0.012653
GO:0003689 DNA clamp loader activity 2.08% (1/48) 9.68 0.001215 0.012653
GO:1990814 DNA/DNA annealing activity 2.08% (1/48) 9.68 0.001215 0.012653
GO:0017111 ribonucleoside triphosphate phosphatase activity 10.42% (5/48) 2.63 0.001255 0.012695
GO:0016070 RNA metabolic process 12.5% (6/48) 2.28 0.00138 0.013569
GO:0003723 RNA binding 12.5% (6/48) 2.27 0.001429 0.013673
GO:0008213 protein alkylation 4.17% (2/48) 5.07 0.00164 0.014512
GO:0006479 protein methylation 4.17% (2/48) 5.07 0.00164 0.014512
GO:0018205 peptidyl-lysine modification 4.17% (2/48) 5.07 0.00164 0.014512
GO:0016787 hydrolase activity 22.92% (11/48) 1.45 0.001786 0.014702
GO:0016462 pyrophosphatase activity 10.42% (5/48) 2.52 0.001757 0.014813
GO:0140098 catalytic activity, acting on RNA 8.33% (4/48) 2.96 0.001739 0.015018
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 10.42% (5/48) 2.49 0.0019 0.01529
GO:0016817 hydrolase activity, acting on acid anhydrides 10.42% (5/48) 2.48 0.001981 0.015583
GO:0044238 primary metabolic process 37.5% (18/48) 0.98 0.002132 0.016411
GO:0008568 microtubule severing ATPase activity 2.08% (1/48) 8.68 0.002429 0.016536
GO:0033750 ribosome localization 2.08% (1/48) 8.68 0.002429 0.016536
GO:0000055 ribosomal large subunit export from nucleus 2.08% (1/48) 8.68 0.002429 0.016536
GO:0000054 ribosomal subunit export from nucleus 2.08% (1/48) 8.68 0.002429 0.016536
GO:0140776 protein-containing complex destabilizing activity 2.08% (1/48) 8.68 0.002429 0.016536
GO:0008296 3'-5'-DNA exonuclease activity 2.08% (1/48) 8.68 0.002429 0.016536
GO:0140097 catalytic activity, acting on DNA 8.33% (4/48) 2.78 0.002706 0.018074
GO:0003729 mRNA binding 4.17% (2/48) 4.64 0.002952 0.019351
GO:0035639 purine ribonucleoside triphosphate binding 20.83% (10/48) 1.43 0.003286 0.021153
GO:0101031 protein folding chaperone complex 2.08% (1/48) 8.1 0.003641 0.021484
GO:0005832 chaperonin-containing T-complex 2.08% (1/48) 8.1 0.003641 0.021484
GO:0034511 U3 snoRNA binding 2.08% (1/48) 8.1 0.003641 0.021484
GO:0031297 replication fork processing 2.08% (1/48) 8.1 0.003641 0.021484
GO:0045005 DNA-templated DNA replication maintenance of fidelity 2.08% (1/48) 8.1 0.003641 0.021484
GO:0030870 Mre11 complex 2.08% (1/48) 7.68 0.004852 0.022022
GO:0051656 establishment of organelle localization 2.08% (1/48) 7.68 0.004852 0.022022
GO:0009106 lipoate metabolic process 2.08% (1/48) 7.68 0.004852 0.022022
GO:0009615 response to virus 2.08% (1/48) 7.68 0.004852 0.022022
GO:0032543 mitochondrial translation 2.08% (1/48) 7.68 0.004852 0.022022
GO:0031503 protein-containing complex localization 2.08% (1/48) 7.68 0.004852 0.022022
GO:0009107 lipoate biosynthetic process 2.08% (1/48) 7.68 0.004852 0.022022
GO:0016992 lipoate synthase activity 2.08% (1/48) 7.68 0.004852 0.022022
GO:0051607 defense response to virus 2.08% (1/48) 7.68 0.004852 0.022022
GO:0042273 ribosomal large subunit biogenesis 2.08% (1/48) 7.68 0.004852 0.022022
GO:0140546 defense response to symbiont 2.08% (1/48) 7.68 0.004852 0.022022
GO:0005575 cellular_component 27.08% (13/48) 1.15 0.003909 0.022321
GO:0008152 metabolic process 39.58% (19/48) 0.86 0.003899 0.022625
GO:0097367 carbohydrate derivative binding 20.83% (10/48) 1.34 0.005082 0.022774
GO:0008150 biological_process 56.25% (27/48) 0.6 0.005307 0.023483
GO:0009987 cellular process 41.67% (20/48) 0.82 0.004379 0.024603
GO:0032555 purine ribonucleotide binding 20.83% (10/48) 1.36 0.004486 0.024812
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 4.17% (2/48) 4.31 0.004622 0.025172
GO:0071704 organic substance metabolic process 37.5% (18/48) 0.88 0.004694 0.025179
GO:0032553 ribonucleotide binding 20.83% (10/48) 1.35 0.004803 0.025377
GO:0051640 organelle localization 2.08% (1/48) 7.36 0.006062 0.026492
GO:0017076 purine nucleotide binding 20.83% (10/48) 1.29 0.006558 0.027969
GO:0008270 zinc ion binding 8.33% (4/48) 2.42 0.006515 0.028126
GO:0008092 cytoskeletal protein binding 6.25% (3/48) 2.95 0.006901 0.029083
GO:0004529 DNA exonuclease activity 2.08% (1/48) 7.1 0.00727 0.029245
GO:0051013 microtubule severing 2.08% (1/48) 7.1 0.00727 0.029245
GO:0016895 DNA exonuclease activity, producing 5'-phosphomonoesters 2.08% (1/48) 7.1 0.00727 0.029245
GO:0006364 rRNA processing 4.17% (2/48) 4.0 0.007025 0.029259
GO:0110165 cellular anatomical entity 20.83% (10/48) 1.26 0.007449 0.02963
GO:0016072 rRNA metabolic process 4.17% (2/48) 3.92 0.007836 0.03082
GO:0004520 DNA endonuclease activity 2.08% (1/48) 6.88 0.008476 0.032265
GO:1903231 mRNA base-pairing translational repressor activity 2.08% (1/48) 6.88 0.008476 0.032265
GO:0030371 translation repressor activity 2.08% (1/48) 6.88 0.008476 0.032265
GO:0043687 post-translational protein modification 6.25% (3/48) 2.83 0.00875 0.032951
GO:1901265 nucleoside phosphate binding 20.83% (10/48) 1.21 0.00932 0.034368
GO:0000166 nucleotide binding 20.83% (10/48) 1.21 0.00932 0.034368
GO:0007010 cytoskeleton organization 4.17% (2/48) 3.77 0.009576 0.034947
GO:0043168 anion binding 20.83% (10/48) 1.2 0.009863 0.035269
GO:0044237 cellular metabolic process 29.17% (14/48) 0.94 0.009853 0.035593
GO:0018193 peptidyl-amino acid modification 4.17% (2/48) 3.7 0.010505 0.037187
GO:0033558 protein lysine deacetylase activity 2.08% (1/48) 6.36 0.012088 0.041951
GO:0004407 histone deacetylase activity 2.08% (1/48) 6.36 0.012088 0.041951
GO:0016887 ATP hydrolysis activity 6.25% (3/48) 2.65 0.012228 0.042027
GO:0008094 ATP-dependent activity, acting on DNA 6.25% (3/48) 2.64 0.012479 0.042071
GO:1901363 heterocyclic compound binding 20.83% (10/48) 1.15 0.012441 0.042347
GO:0004536 DNA nuclease activity 2.08% (1/48) 6.23 0.013288 0.043964
GO:0036094 small molecule binding 20.83% (10/48) 1.14 0.013211 0.044121
GO:0045182 translation regulator activity 4.17% (2/48) 3.48 0.014053 0.045641
GO:0046914 transition metal ion binding 10.42% (5/48) 1.8 0.013972 0.045796
GO:0031167 rRNA methylation 2.08% (1/48) 6.1 0.014488 0.046625
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (48) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms