Coexpression cluster: Cluster_170 (Zea mays HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0071528 tRNA re-export from nucleus 1.12% (2/179) 7.79 2e-05 0.001724
GO:0051031 tRNA transport 1.12% (2/179) 7.79 2e-05 0.001724
GO:0006409 tRNA export from nucleus 1.12% (2/179) 7.79 2e-05 0.001724
GO:0004484 mRNA guanylyltransferase activity 1.12% (2/179) 7.79 2e-05 0.001724
GO:0004651 polynucleotide 5'-phosphatase activity 1.12% (2/179) 7.79 2e-05 0.001724
GO:0051169 nuclear transport 2.79% (5/179) 3.88 2.4e-05 0.001783
GO:0044238 primary metabolic process 31.84% (57/179) 0.74 2.8e-05 0.001848
GO:0090304 nucleic acid metabolic process 11.73% (21/179) 1.42 4.1e-05 0.001861
GO:0043170 macromolecule metabolic process 25.14% (45/179) 0.83 6.7e-05 0.001875
GO:0140326 ATPase-coupled intramembrane lipid transporter activity 1.68% (3/179) 5.56 3.2e-05 0.001898
GO:0097064 ncRNA export from nucleus 1.12% (2/179) 7.2 6.1e-05 0.0019
GO:0006370 7-methylguanosine mRNA capping 1.12% (2/179) 7.2 6.1e-05 0.0019
GO:0008192 RNA guanylyltransferase activity 1.12% (2/179) 7.2 6.1e-05 0.0019
GO:0015914 phospholipid transport 1.68% (3/179) 5.2 7.1e-05 0.001908
GO:0006807 nitrogen compound metabolic process 27.37% (49/179) 0.78 7.5e-05 0.001925
GO:0016070 RNA metabolic process 8.38% (15/179) 1.71 6.5e-05 0.001929
GO:0004652 obsolete polynucleotide adenylyltransferase activity 1.68% (3/179) 5.37 4.9e-05 0.001934
GO:0043631 obsolete RNA polyadenylation 1.68% (3/179) 5.37 4.9e-05 0.001934
GO:0016197 endosomal transport 2.23% (4/179) 4.43 3.6e-05 0.001947
GO:0000151 ubiquitin ligase complex 2.23% (4/179) 4.39 4e-05 0.001965
GO:0051649 establishment of localization in cell 5.03% (9/179) 2.32 9e-05 0.002055
GO:0046907 intracellular transport 5.03% (9/179) 2.33 8.7e-05 0.002057
GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway 1.68% (3/179) 5.12 8.4e-05 0.00207
GO:0140303 intramembrane lipid transporter activity 1.68% (3/179) 5.28 5.9e-05 0.002194
GO:0006139 nucleobase-containing compound metabolic process 12.85% (23/179) 1.25 0.000111 0.002421
GO:0051020 GTPase binding 1.68% (3/179) 4.91 0.000132 0.002696
GO:0031267 small GTPase binding 1.68% (3/179) 4.91 0.000132 0.002696
GO:0032509 endosome transport via multivesicular body sorting pathway 1.68% (3/179) 4.85 0.000152 0.002891
GO:0045324 late endosome to vacuole transport 1.68% (3/179) 4.85 0.000152 0.002891
GO:0051168 nuclear export 1.68% (3/179) 4.79 0.000173 0.00319
GO:0009452 7-methylguanosine RNA capping 1.12% (2/179) 6.46 0.000202 0.003323
GO:0036260 RNA capping 1.12% (2/179) 6.46 0.000202 0.003323
GO:0005049 nuclear export signal receptor activity 1.12% (2/179) 6.46 0.000202 0.003323
GO:0005319 lipid transporter activity 1.68% (3/179) 4.73 0.000196 0.003503
GO:0003674 molecular_function 65.36% (117/179) 0.32 0.000242 0.003861
GO:0005488 binding 46.93% (84/179) 0.57 1.4e-05 0.004005
GO:0071985 multivesicular body sorting pathway 1.68% (3/179) 4.51 0.000307 0.004647
GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity 1.12% (2/179) 6.2 0.000303 0.004708
GO:0006913 nucleocytoplasmic transport 2.23% (4/179) 3.6 0.000348 0.005139
GO:0046483 heterocycle metabolic process 12.85% (23/179) 1.12 0.000369 0.005315
GO:0071704 organic substance metabolic process 31.28% (56/179) 0.62 0.000379 0.005336
GO:0006725 cellular aromatic compound metabolic process 12.85% (23/179) 1.11 0.000428 0.005748
GO:0008409 5'-3' exonuclease activity 1.12% (2/179) 5.98 0.000423 0.005807
GO:0031123 RNA 3'-end processing 1.68% (3/179) 4.28 0.000494 0.006486
GO:0006396 RNA processing 6.15% (11/179) 2.36 1.2e-05 0.006842
GO:0070568 guanylyltransferase activity 1.12% (2/179) 5.79 0.000562 0.006916
GO:0015748 organophosphate ester transport 1.68% (3/179) 4.24 0.000538 0.006917
GO:1901360 organic cyclic compound metabolic process 12.85% (23/179) 1.08 0.000556 0.00699
GO:0031461 cullin-RING ubiquitin ligase complex 1.68% (3/179) 4.2 0.000585 0.00706
GO:0009057 macromolecule catabolic process 3.91% (7/179) 2.29 0.000619 0.007176
GO:0008152 metabolic process 32.4% (58/179) 0.58 0.000609 0.007203
GO:0019899 enzyme binding 2.23% (4/179) 3.36 0.000648 0.007368
GO:0005515 protein binding 19.55% (35/179) 0.8 0.000808 0.009005
GO:0003723 RNA binding 7.26% (13/179) 1.49 0.000826 0.009036
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 1.12% (2/179) 5.46 0.000897 0.009642
GO:0051641 cellular localization 5.03% (9/179) 1.83 0.001058 0.011165
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity 1.12% (2/179) 5.33 0.001094 0.011338
GO:0034641 cellular nitrogen compound metabolic process 13.97% (25/179) 0.94 0.001265 0.012885
GO:0140142 nucleocytoplasmic carrier activity 1.12% (2/179) 5.2 0.001308 0.013105
GO:0097159 organic cyclic compound binding 28.49% (51/179) 0.58 0.001349 0.01329
GO:0007034 vacuolar transport 1.68% (3/179) 3.76 0.001447 0.01379
GO:0071702 organic substance transport 5.03% (9/179) 1.77 0.001431 0.013867
GO:0003924 GTPase activity 3.35% (6/179) 2.29 0.001542 0.014461
GO:0009987 cellular process 33.52% (60/179) 0.5 0.00179 0.01653
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 5.59% (10/179) 1.59 0.001953 0.017755
GO:0006401 RNA catabolic process 1.68% (3/179) 3.59 0.002019 0.018083
GO:0016817 hydrolase activity, acting on acid anhydrides 5.59% (10/179) 1.58 0.002092 0.018455
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 1.12% (2/179) 4.79 0.002351 0.020429
GO:0110156 methylguanosine-cap decapping 1.12% (2/179) 4.7 0.002656 0.022424
GO:0110154 RNA decapping 1.12% (2/179) 4.7 0.002656 0.022424
GO:0016779 nucleotidyltransferase activity 2.79% (5/179) 2.39 0.002777 0.023119
GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor 1.12% (2/179) 4.62 0.002979 0.023167
GO:0000152 nuclear ubiquitin ligase complex 1.12% (2/179) 4.62 0.002979 0.023167
GO:0050997 quaternary ammonium group binding 1.12% (2/179) 4.62 0.002979 0.023167
GO:0005680 anaphase-promoting complex 1.12% (2/179) 4.62 0.002979 0.023167
GO:0030976 thiamine pyrophosphate binding 1.12% (2/179) 4.62 0.002979 0.023167
GO:0006405 RNA export from nucleus 1.12% (2/179) 4.54 0.00332 0.024222
GO:0000049 tRNA binding 1.12% (2/179) 4.54 0.00332 0.024222
GO:0006265 DNA topological change 1.12% (2/179) 4.54 0.00332 0.024222
GO:0006289 nucleotide-excision repair 1.12% (2/179) 4.54 0.00332 0.024222
GO:0019001 guanyl nucleotide binding 3.35% (6/179) 2.04 0.003681 0.024443
GO:0017111 ribonucleoside triphosphate phosphatase activity 5.03% (9/179) 1.58 0.003487 0.024535
GO:0032561 guanyl ribonucleotide binding 3.35% (6/179) 2.05 0.003464 0.024668
GO:0005525 GTP binding 3.35% (6/179) 2.05 0.003464 0.024668
GO:0003916 DNA topoisomerase activity 1.12% (2/179) 4.46 0.003678 0.024699
GO:0050657 nucleic acid transport 1.12% (2/179) 4.46 0.003678 0.024699
GO:0050658 RNA transport 1.12% (2/179) 4.46 0.003678 0.024699
GO:0051236 establishment of RNA localization 1.12% (2/179) 4.46 0.003678 0.024699
GO:0006869 lipid transport 1.68% (3/179) 3.35 0.003253 0.024967
GO:1901575 organic substance catabolic process 5.03% (9/179) 1.55 0.003917 0.025721
GO:0055087 Ski complex 0.56% (1/179) 7.79 0.004532 0.027899
GO:0006283 transcription-coupled nucleotide-excision repair 0.56% (1/179) 7.79 0.004532 0.027899
GO:0004375 glycine dehydrogenase (decarboxylating) activity 0.56% (1/179) 7.79 0.004532 0.027899
GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 0.56% (1/179) 7.79 0.004532 0.027899
GO:0008150 biological_process 46.93% (84/179) 0.34 0.004355 0.028285
GO:0000159 protein phosphatase type 2A complex 1.12% (2/179) 4.33 0.004445 0.028553
GO:1903293 phosphatase complex 1.12% (2/179) 4.26 0.004854 0.02927
GO:0008287 protein serine/threonine phosphatase complex 1.12% (2/179) 4.26 0.004854 0.02927
GO:0008138 protein tyrosine/serine/threonine phosphatase activity 1.12% (2/179) 4.14 0.005721 0.033477
GO:0016462 pyrophosphatase activity 5.03% (9/179) 1.47 0.005705 0.033717
GO:0009056 catabolic process 5.03% (9/179) 1.47 0.005705 0.033717
GO:0043168 anion binding 15.08% (27/179) 0.73 0.006082 0.034898
GO:0035639 purine ribonucleoside triphosphate binding 13.41% (24/179) 0.79 0.00604 0.034999
GO:0016758 hexosyltransferase activity 3.35% (6/179) 1.85 0.006689 0.038014
GO:0006650 glycerophospholipid metabolic process 2.23% (4/179) 2.42 0.006898 0.038825
GO:0043167 ion binding 20.67% (37/179) 0.58 0.007237 0.04035
GO:0072666 establishment of protein localization to vacuole 1.12% (2/179) 3.93 0.007651 0.041109
GO:0140104 molecular carrier activity 1.12% (2/179) 3.93 0.007651 0.041109
GO:0072665 protein localization to vacuole 1.12% (2/179) 3.93 0.007651 0.041109
GO:0046486 glycerolipid metabolic process 2.23% (4/179) 2.38 0.007493 0.041388
GO:0005543 phospholipid binding 1.68% (3/179) 2.89 0.007814 0.041604
GO:0016787 hydrolase activity 13.97% (25/179) 0.73 0.008443 0.044554
GO:0006506 GPI anchor biosynthetic process 1.12% (2/179) 3.83 0.008711 0.044769
GO:0006505 GPI anchor metabolic process 1.12% (2/179) 3.83 0.008711 0.044769
GO:0000956 nuclear-transcribed mRNA catabolic process 1.12% (2/179) 3.83 0.008711 0.044769
GO:0032039 integrator complex 0.56% (1/179) 6.79 0.009043 0.04568
GO:0031307 obsolete integral component of mitochondrial outer membrane 0.56% (1/179) 6.79 0.009043 0.04568
GO:1901363 heterocyclic compound binding 15.08% (27/179) 0.68 0.009485 0.047508
GO:0043632 modification-dependent macromolecule catabolic process 2.23% (4/179) 2.27 0.009841 0.047673
GO:0019941 modification-dependent protein catabolic process 2.23% (4/179) 2.27 0.009841 0.047673
GO:0006511 ubiquitin-dependent protein catabolic process 2.23% (4/179) 2.27 0.009841 0.047673
GO:0016757 glycosyltransferase activity 5.03% (9/179) 1.35 0.009611 0.047734
GO:0016740 transferase activity 16.76% (30/179) 0.63 0.010215 0.048294
GO:0032555 purine ribonucleotide binding 13.41% (24/179) 0.73 0.010082 0.048445
GO:0032991 protein-containing complex 8.38% (15/179) 0.97 0.010196 0.048595
GO:1901681 sulfur compound binding 1.12% (2/179) 3.7 0.010417 0.048861
GO:0036094 small molecule binding 15.08% (27/179) 0.67 0.010625 0.049442
GO:0032553 ribonucleotide binding 13.41% (24/179) 0.71 0.01126 0.049663
GO:0044237 cellular metabolic process 21.79% (39/179) 0.52 0.011214 0.049831
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (179) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms