Coexpression cluster: Cluster_42 (Zea mays HCCA coexpression clusters - Leiboff and Hake (2019))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005198 structural molecule activity 13.91% (21/151) 2.99 0.0 0.0
GO:0098800 inner mitochondrial membrane protein complex 5.96% (9/151) 5.29 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 13.25% (20/151) 2.96 0.0 0.0
GO:0043228 non-membrane-bounded organelle 13.25% (20/151) 2.96 0.0 0.0
GO:0098803 respiratory chain complex 5.3% (8/151) 5.86 0.0 0.0
GO:0098798 mitochondrial protein-containing complex 5.96% (9/151) 5.05 0.0 0.0
GO:0006412 translation 11.92% (18/151) 3.06 0.0 0.0
GO:0043043 peptide biosynthetic process 11.92% (18/151) 3.02 0.0 0.0
GO:0003735 structural constituent of ribosome 11.92% (18/151) 3.02 0.0 0.0
GO:0043604 amide biosynthetic process 11.92% (18/151) 2.93 0.0 0.0
GO:0005840 ribosome 11.26% (17/151) 3.05 0.0 0.0
GO:0006518 peptide metabolic process 11.92% (18/151) 2.94 0.0 0.0
GO:0043603 amide metabolic process 11.92% (18/151) 2.8 0.0 0.0
GO:0005575 cellular_component 31.13% (47/151) 1.36 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 14.57% (22/151) 2.24 0.0 0.0
GO:1901576 organic substance biosynthetic process 18.54% (28/151) 1.87 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 13.25% (20/151) 2.27 0.0 0.0
GO:1990351 transporter complex 3.31% (5/151) 6.11 0.0 0.0
GO:1902495 transmembrane transporter complex 3.31% (5/151) 6.11 0.0 0.0
GO:0009058 biosynthetic process 18.54% (28/151) 1.78 0.0 0.0
GO:0015935 small ribosomal subunit 3.97% (6/151) 5.22 0.0 0.0
GO:0009059 macromolecule biosynthetic process 12.58% (19/151) 2.28 0.0 0.0
GO:1990204 oxidoreductase complex 4.64% (7/151) 4.53 0.0 1e-06
GO:0044249 cellular biosynthetic process 16.56% (25/151) 1.82 0.0 1e-06
GO:0043229 intracellular organelle 14.57% (22/151) 1.98 0.0 1e-06
GO:0043226 organelle 14.57% (22/151) 1.98 0.0 1e-06
GO:0110165 cellular anatomical entity 23.18% (35/151) 1.41 0.0 1e-06
GO:0044391 ribosomal subunit 4.64% (7/151) 3.98 0.0 6e-06
GO:1990904 ribonucleoprotein complex 5.96% (9/151) 3.26 0.0 9e-06
GO:0032991 protein-containing complex 14.57% (22/151) 1.77 1e-06 9e-06
GO:0009987 cellular process 41.72% (63/151) 0.82 1e-06 1.2e-05
GO:0031966 mitochondrial membrane 3.31% (5/151) 4.86 1e-06 1.3e-05
GO:0031090 organelle membrane 4.64% (7/151) 3.74 1e-06 1.7e-05
GO:0019646 aerobic electron transport chain 2.65% (4/151) 5.64 1e-06 1.7e-05
GO:0009060 aerobic respiration 2.65% (4/151) 5.64 1e-06 1.7e-05
GO:0070069 cytochrome complex 2.65% (4/151) 5.51 2e-06 2.4e-05
GO:0045333 cellular respiration 2.65% (4/151) 5.51 2e-06 2.4e-05
GO:0098796 membrane protein complex 6.62% (10/151) 2.79 2e-06 3e-05
GO:0046907 intracellular transport 6.62% (10/151) 2.73 3e-06 4.3e-05
GO:0051649 establishment of localization in cell 6.62% (10/151) 2.72 3e-06 4.4e-05
GO:0042254 ribosome biogenesis 2.65% (4/151) 5.03 7e-06 8.6e-05
GO:0003924 GTPase activity 5.3% (8/151) 2.95 1.1e-05 0.000131
GO:0022904 respiratory electron transport chain 2.65% (4/151) 4.86 1.1e-05 0.000133
GO:0034641 cellular nitrogen compound metabolic process 17.88% (27/151) 1.3 1.2e-05 0.000134
GO:0005750 mitochondrial respiratory chain complex III 1.99% (3/151) 6.03 1.2e-05 0.000136
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c 1.99% (3/151) 6.03 1.2e-05 0.000136
GO:0045275 respiratory chain complex III 1.99% (3/151) 5.92 1.5e-05 0.000165
GO:0015980 energy derivation by oxidation of organic compounds 2.65% (4/151) 4.75 1.5e-05 0.000169
GO:0022900 electron transport chain 3.31% (5/151) 3.89 2.3e-05 0.000247
GO:0022613 ribonucleoprotein complex biogenesis 2.65% (4/151) 4.51 3e-05 0.000308
GO:0032561 guanyl ribonucleotide binding 5.3% (8/151) 2.71 3.4e-05 0.000339
GO:0005525 GTP binding 5.3% (8/151) 2.71 3.4e-05 0.000339
GO:0019001 guanyl nucleotide binding 5.3% (8/151) 2.7 3.7e-05 0.000364
GO:0051641 cellular localization 6.62% (10/151) 2.23 6.1e-05 0.000588
GO:0005743 mitochondrial inner membrane 1.99% (3/151) 5.03 0.000105 0.00099
GO:0019866 organelle inner membrane 1.99% (3/151) 4.97 0.000118 0.001102
GO:0005747 mitochondrial respiratory chain complex I 1.32% (2/151) 6.71 0.000144 0.001272
GO:0030964 NADH dehydrogenase complex 1.32% (2/151) 6.71 0.000144 0.001272
GO:0045271 respiratory chain complex I 1.32% (2/151) 6.71 0.000144 0.001272
GO:1902494 catalytic complex 5.96% (9/151) 2.21 0.000158 0.001371
GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) 1.32% (2/151) 6.45 0.000216 0.001728
GO:0004749 ribose phosphate diphosphokinase activity 1.32% (2/151) 6.45 0.000216 0.001728
GO:0045257 succinate dehydrogenase complex (ubiquinone) 1.32% (2/151) 6.45 0.000216 0.001728
GO:0005838 proteasome regulatory particle 1.32% (2/151) 6.45 0.000216 0.001728
GO:0045283 fumarate reductase complex 1.32% (2/151) 6.45 0.000216 0.001728
GO:0044237 cellular metabolic process 26.49% (40/151) 0.81 0.00022 0.001733
GO:0045281 succinate dehydrogenase complex 1.32% (2/151) 6.03 0.0004 0.003114
GO:0006091 generation of precursor metabolites and energy 3.97% (6/151) 2.66 0.000411 0.003148
GO:0016462 pyrophosphatase activity 6.62% (10/151) 1.87 0.000467 0.003527
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 6.62% (10/151) 1.84 0.000537 0.003994
GO:0016817 hydrolase activity, acting on acid anhydrides 6.62% (10/151) 1.83 0.000577 0.004237
GO:0003723 RNA binding 7.95% (12/151) 1.62 0.000586 0.004241
GO:0016778 diphosphotransferase activity 1.32% (2/151) 5.71 0.00064 0.00457
GO:0044085 cellular component biogenesis 2.65% (4/151) 3.26 0.000836 0.005888
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 1.99% (3/151) 3.97 0.000941 0.006537
GO:0098656 monoatomic anion transmembrane transport 1.32% (2/151) 5.33 0.001102 0.007453
GO:0017111 ribonucleoside triphosphate phosphatase activity 5.96% (9/151) 1.82 0.001095 0.007505
GO:0006839 mitochondrial transport 1.99% (3/151) 3.66 0.001756 0.011729
GO:0030515 snoRNA binding 1.32% (2/151) 4.94 0.001902 0.01254
GO:0019538 protein metabolic process 17.22% (26/151) 0.87 0.001933 0.012588
GO:0005741 mitochondrial outer membrane 1.32% (2/151) 4.86 0.002134 0.013725
GO:0008152 metabolic process 31.79% (48/151) 0.55 0.002637 0.016757
GO:0006913 nucleocytoplasmic transport 1.99% (3/151) 3.43 0.002801 0.01758
GO:1901564 organonitrogen compound metabolic process 19.87% (30/151) 0.75 0.003056 0.018303
GO:1901293 nucleoside phosphate biosynthetic process 2.65% (4/151) 2.75 0.003037 0.0184
GO:0009165 nucleotide biosynthetic process 2.65% (4/151) 2.75 0.003037 0.0184
GO:0051169 nuclear transport 1.99% (3/151) 3.39 0.003024 0.018755
GO:0005730 nucleolus 1.32% (2/151) 4.51 0.003485 0.02063
GO:0044238 primary metabolic process 27.81% (42/151) 0.55 0.005385 0.031526
GO:0005200 structural constituent of cytoskeleton 1.32% (2/151) 4.08 0.006278 0.036341
GO:0001522 pseudouridine synthesis 1.32% (2/151) 3.99 0.007093 0.040608
GO:0009117 nucleotide metabolic process 3.31% (5/151) 2.06 0.007238 0.040988
GO:0080132 fatty acid alpha-hydroxylase activity 0.66% (1/151) 7.03 0.007631 0.041852
GO:0051499 D-aminoacyl-tRNA deacylase activity 0.66% (1/151) 7.03 0.007631 0.041852
GO:0006121 mitochondrial electron transport, succinate to ubiquinone 0.66% (1/151) 7.03 0.007631 0.041852
GO:0008150 biological_process 47.02% (71/151) 0.34 0.007771 0.042176
GO:0003746 translation elongation factor activity 1.32% (2/151) 3.9 0.007953 0.042716
GO:0048193 Golgi vesicle transport 1.99% (3/151) 2.86 0.008343 0.043907
GO:0006753 nucleoside phosphate metabolic process 3.31% (5/151) 2.01 0.008331 0.04429
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (151) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms